FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 2G3MR

Calculation Name: 1G5C-A-Xray549

Preferred Name: Carbonic anhydrase

Target Type: SINGLE PROTEIN

Ligand Name: 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid | calcium ion | zinc ion

Ligand 3-letter code: EPE | CA | ZN

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 1G5C

Chain ID: A

ChEMBL ID: CHEMBL3926

UniProt ID: Q50565

Base Structure: X-ray

Registration Date: 2025-10-11

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement ac.sh, 23 2024 Oct
Water No
Procedure Manual calculation
Remarks
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 169
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -1529872.09593
FMO2-HF: Nuclear repulsion 1463995.507033
FMO2-HF: Total energy -65876.588898
FMO2-MP2: Total energy -66067.672539


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:2:ILE)


Summations of interaction energy for fragment #1(A:2:ILE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-102.161-97.25212.022-8.69-8.241-0.104
Interaction energy analysis for fragmet #1(A:2:ILE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.839 / q_NPA : 0.903
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A4LYS10.9770.9713.44254.63856.6120.002-0.747-1.229-0.001
4A5ASP-1-0.835-0.8871.774-106.827-104.74011.069-7.499-5.657-0.100
5A6ILE00.1150.0452.4146.6457.4930.951-0.444-1.355-0.003
6A7LEU0-0.027-0.0215.5035.8505.8500.0000.0000.0000.000
7A8ARG10.8870.9395.68742.48642.4860.0000.0000.0000.000
8A9GLU-1-0.921-0.9596.681-34.536-34.5360.0000.0000.0000.000
9A10ASN0-0.039-0.0309.6093.1483.1480.0000.0000.0000.000
10A11GLN0-0.064-0.01711.3910.9910.9910.0000.0000.0000.000
11A12ASP-1-0.872-0.92613.729-18.378-18.3780.0000.0000.0000.000
12A13PHE0-0.0180.00513.3581.0541.0540.0000.0000.0000.000
13A14ARG10.7850.86315.33317.28217.2820.0000.0000.0000.000
14A15PHE00.0000.01418.643-0.153-0.1530.0000.0000.0000.000
15A16ARG10.8840.93720.24413.75813.7580.0000.0000.0000.000
16A17ASP-1-0.816-0.89723.742-10.870-10.8700.0000.0000.0000.000
17A18LEU00.0040.00823.351-0.692-0.6920.0000.0000.0000.000
18A19SER00.024-0.01323.624-0.085-0.0850.0000.0000.0000.000
19A20ASP-1-0.904-0.93418.981-14.338-14.3380.0000.0000.0000.000
20A21LEU0-0.038-0.00818.283-1.016-1.0160.0000.0000.0000.000
21A22LYS10.9430.96317.30815.99615.9960.0000.0000.0000.000
22A23HIS0-0.018-0.03218.4870.6080.6080.0000.0000.0000.000
23A24SER00.0150.03022.4050.2170.2170.0000.0000.0000.000
24A25PRO00.0630.02424.961-0.264-0.2640.0000.0000.0000.000
25A26LYS10.7750.92622.63212.18112.1810.0000.0000.0000.000
26A27LEU00.1010.06428.4120.1900.1900.0000.0000.0000.000
27A28CYS0-0.030-0.01231.9640.0060.0060.0000.0000.0000.000
28A29ILE00.0120.01134.7000.1860.1860.0000.0000.0000.000
29A30ILE00.0130.00738.226-0.016-0.0160.0000.0000.0000.000
30A31THR0-0.012-0.03441.3080.1420.1420.0000.0000.0000.000
31A32CYS-1-0.830-0.77644.261-6.304-6.3040.0000.0000.0000.000
32A33MET00.000-0.02446.015-0.142-0.1420.0000.0000.0000.000
33A34ASP-1-0.773-0.89447.875-5.943-5.9430.0000.0000.0000.000
34A35SER00.000-0.01048.616-0.108-0.1080.0000.0000.0000.000
35A36ARG10.7640.84848.9535.6685.6680.0000.0000.0000.000
36A37LEU00.0130.00645.573-0.022-0.0220.0000.0000.0000.000
37A38ILE0-0.065-0.02443.879-0.186-0.1860.0000.0000.0000.000
38A39ASP-1-0.876-0.91242.749-7.057-7.0570.0000.0000.0000.000
39A40LEU0-0.037-0.02043.284-0.111-0.1110.0000.0000.0000.000
40A41LEU00.0310.01341.844-0.028-0.0280.0000.0000.0000.000
41A42GLU-1-0.847-0.93538.759-7.610-7.6100.0000.0000.0000.000
42A43ARG10.7660.85837.8687.5887.5880.0000.0000.0000.000
43A44ALA0-0.0170.00241.245-0.057-0.0570.0000.0000.0000.000
44A45LEU0-0.025-0.01638.5520.0190.0190.0000.0000.0000.000
45A46GLY0-0.033-0.00537.481-0.179-0.1790.0000.0000.0000.000
46A47ILE0-0.0210.00934.547-0.270-0.2700.0000.0000.0000.000
47A48GLY00.0230.00033.6880.2570.2570.0000.0000.0000.000
48A49ARG10.8870.92828.13710.23510.2350.0000.0000.0000.000
49A50GLY00.0210.00328.831-0.287-0.2870.0000.0000.0000.000
50A51ASP-1-0.832-0.92428.829-10.078-10.0780.0000.0000.0000.000
51A52ALA00.0030.00230.693-0.006-0.0060.0000.0000.0000.000
52A53LYS10.7920.89527.17010.82810.8280.0000.0000.0000.000
53A54VAL0-0.003-0.01333.5020.1950.1950.0000.0000.0000.000
54A55ILE0-0.020-0.00637.307-0.001-0.0010.0000.0000.0000.000
55A56LYS10.8820.94539.9687.4327.4320.0000.0000.0000.000
56A57ASN0-0.034-0.01943.5370.0030.0030.0000.0000.0000.000
57A58ALA00.0610.00546.7060.0340.0340.0000.0000.0000.000
58A59GLY00.1100.01250.3160.0530.0530.0000.0000.0000.000
59A60ASN0-0.083-0.04346.1420.0840.0840.0000.0000.0000.000
60A61ILE00.0660.05947.170-0.070-0.0700.0000.0000.0000.000
61A62VAL0-0.0140.00443.872-0.122-0.1220.0000.0000.0000.000
62A63ASP-1-0.768-0.87645.654-6.766-6.7660.0000.0000.0000.000
63A64ASP-1-0.868-0.95644.319-7.007-7.0070.0000.0000.0000.000
64A65GLY0-0.059-0.02642.616-0.206-0.2060.0000.0000.0000.000
65A66VAL0-0.0010.00741.137-0.275-0.2750.0000.0000.0000.000
66A67ILE00.0300.01539.954-0.255-0.2550.0000.0000.0000.000
67A68ARG10.9160.95338.4447.2007.2000.0000.0000.0000.000
68A69SER0-0.038-0.02236.766-0.302-0.3020.0000.0000.0000.000
69A70ALA00.0300.01235.360-0.288-0.2880.0000.0000.0000.000
70A71ALA00.0070.01034.269-0.266-0.2660.0000.0000.0000.000
71A72VAL0-0.050-0.02731.764-0.342-0.3420.0000.0000.0000.000
72A73ALA0-0.0040.00130.686-0.394-0.3940.0000.0000.0000.000
73A74ILE00.0240.02329.694-0.378-0.3780.0000.0000.0000.000
74A75TYR0-0.108-0.07328.391-0.509-0.5090.0000.0000.0000.000
75A76ALA0-0.072-0.03126.726-0.431-0.4310.0000.0000.0000.000
76A77LEU0-0.061-0.02525.758-0.462-0.4620.0000.0000.0000.000
77A78GLY00.0180.03925.370-0.297-0.2970.0000.0000.0000.000
78A79ASP-1-0.868-0.96026.374-10.226-10.2260.0000.0000.0000.000
79A80ASN0-0.039-0.04827.8930.1880.1880.0000.0000.0000.000
80A81GLU-1-0.868-0.91930.633-8.622-8.6220.0000.0000.0000.000
81A82ILE0-0.023-0.02233.642-0.070-0.0700.0000.0000.0000.000
82A83ILE00.0050.00536.6570.1980.1980.0000.0000.0000.000
83A84ILE00.0030.01139.483-0.003-0.0030.0000.0000.0000.000
84A85VAL0-0.025-0.01241.8170.0750.0750.0000.0000.0000.000
85A86GLY00.0810.05844.5760.0160.0160.0000.0000.0000.000
86A87HIS10.7540.81648.1676.0666.0660.0000.0000.0000.000
87A88THR00.0450.01950.5650.0660.0660.0000.0000.0000.000
88A89ASP-1-0.896-0.93754.039-5.497-5.4970.0000.0000.0000.000
89A90CYS0-0.056-0.01452.433-0.061-0.0610.0000.0000.0000.000
90A91GLY00.0180.00554.7450.0060.0060.0000.0000.0000.000
91A92MET00.0480.01353.3670.0740.0740.0000.0000.0000.000
92A93ALA0-0.0140.01856.6280.0340.0340.0000.0000.0000.000
93A94ARG10.8650.92058.7275.2355.2350.0000.0000.0000.000
94A95LEU00.0070.01957.7160.0330.0330.0000.0000.0000.000
95A96ASP-1-0.838-0.91861.872-4.669-4.6690.0000.0000.0000.000
96A97GLU-1-0.850-0.94763.513-5.001-5.0010.0000.0000.0000.000
97A98ASP-1-0.893-0.93865.466-4.561-4.5610.0000.0000.0000.000
98A99LEU0-0.078-0.04166.3040.0220.0220.0000.0000.0000.000
99A100ILE0-0.028-0.01660.920-0.023-0.0230.0000.0000.0000.000
100A101VAL00.0400.01664.579-0.011-0.0110.0000.0000.0000.000
101A102SER0-0.066-0.02666.6360.0340.0340.0000.0000.0000.000
102A103ARG10.9810.97863.5074.9404.9400.0000.0000.0000.000
103A104MET0-0.024-0.00260.923-0.015-0.0150.0000.0000.0000.000
104A105ARG10.8430.87965.2134.5914.5910.0000.0000.0000.000
105A106GLU-1-1.023-0.99868.530-4.620-4.6200.0000.0000.0000.000
106A107LEU0-0.087-0.05364.2130.0210.0210.0000.0000.0000.000
107A108GLY0-0.036-0.00666.444-0.039-0.0390.0000.0000.0000.000
108A109VAL0-0.049-0.02262.479-0.034-0.0340.0000.0000.0000.000
109A110GLU-1-0.945-0.97463.919-4.969-4.9690.0000.0000.0000.000
110A111GLU-1-0.777-0.87365.192-4.694-4.6940.0000.0000.0000.000
111A112GLU-1-0.917-0.94962.065-5.268-5.2680.0000.0000.0000.000
112A113VAL00.0550.02959.715-0.061-0.0610.0000.0000.0000.000
113A114ILE0-0.043-0.02361.420-0.072-0.0720.0000.0000.0000.000
114A115GLU-1-0.962-0.96363.371-4.851-4.8510.0000.0000.0000.000
115A116ASN0-0.025-0.01459.225-0.005-0.0050.0000.0000.0000.000
116A117PHE00.0220.00155.865-0.070-0.0700.0000.0000.0000.000
117A118SER0-0.040-0.03659.391-0.018-0.0180.0000.0000.0000.000
118A119ILE0-0.022-0.01459.546-0.006-0.0060.0000.0000.0000.000
119A120ASP-1-0.939-0.97255.389-5.740-5.7400.0000.0000.0000.000
120A121VAL0-0.103-0.05654.479-0.120-0.1200.0000.0000.0000.000
121A122LEU0-0.068-0.01156.727-0.004-0.0040.0000.0000.0000.000
122A123ASN0-0.031-0.01859.8290.0060.0060.0000.0000.0000.000
123A124PRO0-0.044-0.01655.8350.0240.0240.0000.0000.0000.000
124A125VAL0-0.016-0.00554.777-0.139-0.1390.0000.0000.0000.000
125A126GLY00.0270.03055.7770.1090.1090.0000.0000.0000.000
126A127ASP-1-0.887-0.95956.161-5.343-5.3430.0000.0000.0000.000
127A128GLU-1-0.860-0.94852.980-5.697-5.6970.0000.0000.0000.000
128A129GLU-1-0.848-0.91552.036-5.912-5.9120.0000.0000.0000.000
129A130GLU-1-0.915-0.96551.892-5.585-5.5850.0000.0000.0000.000
130A131ASN00.0090.00450.700-0.120-0.1200.0000.0000.0000.000
131A132VAL0-0.0070.01146.480-0.139-0.1390.0000.0000.0000.000
132A133ILE0-0.025-0.01047.499-0.141-0.1410.0000.0000.0000.000
133A134GLU-1-0.814-0.88848.558-6.218-6.2180.0000.0000.0000.000
134A135GLY00.0260.00046.618-0.083-0.0830.0000.0000.0000.000
135A136VAL00.003-0.00543.453-0.149-0.1490.0000.0000.0000.000
136A137LYS10.8910.93944.0945.9815.9810.0000.0000.0000.000
137A138ARG10.8350.91445.6736.2296.2290.0000.0000.0000.000
138A139LEU0-0.017-0.01139.776-0.105-0.1050.0000.0000.0000.000
139A140LYS10.8690.90839.7327.5297.5290.0000.0000.0000.000
140A141SER0-0.036-0.01642.1510.0380.0380.0000.0000.0000.000
141A142SER0-0.0210.00540.9840.0290.0290.0000.0000.0000.000
142A143PRO0-0.009-0.00940.041-0.164-0.1640.0000.0000.0000.000
143A144LEU0-0.035-0.02336.691-0.211-0.2110.0000.0000.0000.000
144A145ILE0-0.0110.00235.749-0.318-0.3180.0000.0000.0000.000
145A146PRO0-0.021-0.00132.3060.1470.1470.0000.0000.0000.000
146A147GLU-1-0.904-0.96335.365-7.708-7.7080.0000.0000.0000.000
147A148SER0-0.080-0.03831.5430.0470.0470.0000.0000.0000.000
148A149ILE0-0.085-0.02531.537-0.331-0.3310.0000.0000.0000.000
149A150GLY00.0640.05634.1210.2460.2460.0000.0000.0000.000
150A151VAL0-0.076-0.05536.144-0.043-0.0430.0000.0000.0000.000
151A152HIS00.0190.00236.8110.4880.4880.0000.0000.0000.000
152A153GLY00.023-0.00341.340-0.008-0.0080.0000.0000.0000.000
153A154LEU0-0.023-0.01041.9070.1290.1290.0000.0000.0000.000
154A155ILE0-0.0080.00045.9350.0230.0230.0000.0000.0000.000
155A156ILE0-0.016-0.00945.345-0.011-0.0110.0000.0000.0000.000
156A157ASP-1-0.834-0.91848.675-5.680-5.6800.0000.0000.0000.000
157A158ILE0-0.015-0.01450.207-0.097-0.0970.0000.0000.0000.000
158A159ASN0-0.042-0.01952.0440.0260.0260.0000.0000.0000.000
159A160THR0-0.081-0.06152.250-0.057-0.0570.0000.0000.0000.000
160A161GLY00.0330.02748.077-0.072-0.0720.0000.0000.0000.000
161A162ARG10.9130.95947.1565.8435.8430.0000.0000.0000.000
162A163LEU00.0440.02342.9250.0870.0870.0000.0000.0000.000
163A164LYS10.7610.85947.4225.9115.9110.0000.0000.0000.000
164A165PRO00.0140.01245.678-0.047-0.0470.0000.0000.0000.000
165A166LEU0-0.074-0.03647.1790.1660.1660.0000.0000.0000.000
166A167TYR0-0.059-0.05642.4260.2060.2060.0000.0000.0000.000
167A168LEU0-0.059-0.02241.732-0.070-0.0700.0000.0000.0000.000
168A169ASP-1-0.760-0.85039.001-7.601-7.6010.0000.0000.0000.000
169A170GLU-2-1.842-1.89934.633-16.685-16.6850.0000.0000.0000.000