FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 2GV7R

Calculation Name: 1MO7-A-Other549

Preferred Name: Sodium/potassium-transporting ATPase alpha-1 chain

Target Type: SINGLE PROTEIN

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 1MO7

Chain ID: A

ChEMBL ID: CHEMBL3010

UniProt ID: P06685

Base Structure: SolutionNMR

Registration Date: 2025-10-11

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement ac.sh, 23 2024 Oct
Water No
Procedure Manual calculation
Remarks
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 213
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230712
Total energy (hartree)
FMO2-HF: Electronic energy -2466740.170494
FMO2-HF: Nuclear repulsion 2381244.223044
FMO2-HF: Total energy -85495.94745
FMO2-MP2: Total energy -85738.629761


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:383:GLN)


Summations of interaction energy for fragment #1(A:383:GLN)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-251.929-248.46222.536-14.411-11.592-0.174
Interaction energy analysis for fragmet #1(A:383:GLN)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.758 / q_NPA : 0.879
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A385PRO0-0.008-0.0063.794-2.809-1.331-0.018-0.746-0.7140.001
212A594PRO0-0.036-0.0083.1384.2584.6110.007-0.089-0.271-0.001
213A595PRO-1-0.769-0.8851.817-161.234-159.59822.547-13.576-10.607-0.174
4A386MET00.0010.0165.526-3.181-3.1810.0000.0000.0000.000
5A387THR0-0.042-0.0348.2002.7402.7400.0000.0000.0000.000
6A388VAL00.0470.01111.934-1.010-1.0100.0000.0000.0000.000
7A389ALA0-0.031-0.00813.2650.0900.0900.0000.0000.0000.000
8A390HIS00.0600.04215.2101.4191.4190.0000.0000.0000.000
9A391MET0-0.035-0.02818.650-0.043-0.0430.0000.0000.0000.000
10A392TRP0-0.0110.00521.4520.2820.2820.0000.0000.0000.000
11A393PHE00.046-0.00724.194-0.104-0.1040.0000.0000.0000.000
12A394ASP-1-0.885-0.91427.304-10.018-10.0180.0000.0000.0000.000
13A395ASN00.0240.00129.6020.0250.0250.0000.0000.0000.000
14A396GLN0-0.036-0.01128.9760.1290.1290.0000.0000.0000.000
15A397ILE00.0080.00922.878-0.220-0.2200.0000.0000.0000.000
16A398HIS10.7990.89424.71611.64511.6450.0000.0000.0000.000
17A399GLU-1-0.893-0.94624.348-11.881-11.8810.0000.0000.0000.000
18A400ALA0-0.031-0.03821.174-0.018-0.0180.0000.0000.0000.000
19A401ASP-1-0.850-0.93422.347-13.144-13.1440.0000.0000.0000.000
20A402THR0-0.044-0.00517.221-0.507-0.5070.0000.0000.0000.000
21A403THR0-0.032-0.02520.0660.2320.2320.0000.0000.0000.000
22A404GLU-1-0.983-0.98418.868-17.009-17.0090.0000.0000.0000.000
23A405ASN0-0.065-0.02821.5850.9830.9830.0000.0000.0000.000
24A406GLN0-0.0170.00124.0460.7210.7210.0000.0000.0000.000
25A407SER00.017-0.01025.121-0.254-0.2540.0000.0000.0000.000
26A408GLY00.0430.04026.0380.4050.4050.0000.0000.0000.000
27A409VAL0-0.037-0.03227.6050.2480.2480.0000.0000.0000.000
28A410SER0-0.053-0.02531.2820.1650.1650.0000.0000.0000.000
29A411PHE00.0300.03527.6510.2080.2080.0000.0000.0000.000
30A412ASP-1-0.838-0.92332.369-8.823-8.8230.0000.0000.0000.000
31A413LYS10.9420.98232.3838.8138.8130.0000.0000.0000.000
32A414THR00.0670.02632.4860.0910.0910.0000.0000.0000.000
33A415SER0-0.042-0.01732.0950.1610.1610.0000.0000.0000.000
34A416ALA0-0.009-0.00432.089-0.252-0.2520.0000.0000.0000.000
35A417THR00.0440.01129.0460.0350.0350.0000.0000.0000.000
36A418TRP00.0370.02822.768-0.381-0.3810.0000.0000.0000.000
37A419PHE0-0.012-0.01228.042-0.275-0.2750.0000.0000.0000.000
38A420ALA00.0190.01829.714-0.173-0.1730.0000.0000.0000.000
39A421LEU00.0370.01923.074-0.188-0.1880.0000.0000.0000.000
40A422SER0-0.028-0.02625.140-0.592-0.5920.0000.0000.0000.000
41A423ARG10.7710.87025.8699.5399.5390.0000.0000.0000.000
42A424ILE0-0.0040.00624.030-0.041-0.0410.0000.0000.0000.000
43A425ALA0-0.036-0.03321.352-0.430-0.4300.0000.0000.0000.000
44A426GLY00.0040.00221.147-0.697-0.6970.0000.0000.0000.000
45A427LEU00.004-0.00822.824-0.291-0.2910.0000.0000.0000.000
46A428CYS0-0.0740.00222.788-0.323-0.3230.0000.0000.0000.000
47A429ASN00.008-0.00716.765-0.574-0.5740.0000.0000.0000.000
48A430ARG10.8740.94518.18015.75415.7540.0000.0000.0000.000
49A431ALA0-0.046-0.02514.453-0.962-0.9620.0000.0000.0000.000
50A432VAL00.0160.01015.9230.9960.9960.0000.0000.0000.000
51A433PHE00.0360.00015.264-1.516-1.5160.0000.0000.0000.000
52A434GLN0-0.078-0.02813.1921.7061.7060.0000.0000.0000.000
53A435ALA0-0.015-0.01516.1690.9460.9460.0000.0000.0000.000
54A436ASN00.0340.01817.964-0.718-0.7180.0000.0000.0000.000
55A437GLN0-0.021-0.02518.538-0.213-0.2130.0000.0000.0000.000
56A438GLU-1-0.909-0.94121.420-11.328-11.3280.0000.0000.0000.000
57A439ASN0-0.020-0.01223.6840.2540.2540.0000.0000.0000.000
58A440LEU0-0.033-0.01418.575-0.348-0.3480.0000.0000.0000.000
59A441PRO00.0220.01215.464-0.004-0.0040.0000.0000.0000.000
60A442ILE00.0460.00916.165-1.155-1.1550.0000.0000.0000.000
61A443LEU00.0180.0229.566-0.511-0.5110.0000.0000.0000.000
62A444LYS10.9740.97412.55218.21918.2190.0000.0000.0000.000
63A445ARG10.8570.9267.44128.27928.2790.0000.0000.0000.000
64A446ALA0-0.0010.0149.602-0.821-0.8210.0000.0000.0000.000
65A447VAL00.0330.00910.5901.5151.5150.0000.0000.0000.000
66A448ALA0-0.0050.01211.879-0.948-0.9480.0000.0000.0000.000
67A449GLY00.0600.02313.0201.1791.1790.0000.0000.0000.000
68A450ASP-1-0.869-0.94011.145-25.642-25.6420.0000.0000.0000.000
69A451ALA0-0.021-0.0057.3151.2651.2650.0000.0000.0000.000
70A452SER00.0450.0249.2950.1010.1010.0000.0000.0000.000
71A453GLU-1-0.770-0.89512.019-16.391-16.3910.0000.0000.0000.000
72A454SER0-0.024-0.02611.3110.6760.6760.0000.0000.0000.000
73A455ALA0-0.045-0.01212.1580.2290.2290.0000.0000.0000.000
74A456LEU00.0770.03613.6420.6070.6070.0000.0000.0000.000
75A457LEU00.0140.02115.8230.5280.5280.0000.0000.0000.000
76A458LYS10.9050.94911.08926.09726.0970.0000.0000.0000.000
77A459CYS0-0.034-0.01316.1320.4150.4150.0000.0000.0000.000
78A460ILE00.0100.01118.9540.7550.7550.0000.0000.0000.000
79A461GLU-1-0.892-0.95220.622-12.682-12.6820.0000.0000.0000.000
80A462VAL0-0.018-0.01520.1270.5260.5260.0000.0000.0000.000
81A463CYS0-0.067-0.02122.5760.5770.5770.0000.0000.0000.000
82A464CYS0-0.024-0.01824.9820.6240.6240.0000.0000.0000.000
83A465GLY00.0170.01725.6510.4760.4760.0000.0000.0000.000
84A466SER0-0.013-0.01825.972-0.341-0.3410.0000.0000.0000.000
85A467VAL00.0130.01821.0990.1940.1940.0000.0000.0000.000
86A468MET0-0.045-0.03922.3880.2940.2940.0000.0000.0000.000
87A469GLU-1-0.894-0.93724.801-9.926-9.9260.0000.0000.0000.000
88A470MET0-0.012-0.00625.7350.3230.3230.0000.0000.0000.000
89A471ARG10.8270.89724.40212.14412.1440.0000.0000.0000.000
90A472GLU-1-0.882-0.91927.500-10.576-10.5760.0000.0000.0000.000
91A473LYS10.9100.97630.9389.8959.8950.0000.0000.0000.000
92A474TYR00.0170.00830.8990.4240.4240.0000.0000.0000.000
93A475THR0-0.066-0.04032.186-0.001-0.0010.0000.0000.0000.000
94A476LYS10.9060.97026.72611.58311.5830.0000.0000.0000.000
95A477ILE0-0.041-0.01231.4260.1530.1530.0000.0000.0000.000
96A478VAL00.0340.02031.0690.0610.0610.0000.0000.0000.000
97A479GLU-1-0.871-0.94923.979-13.311-13.3110.0000.0000.0000.000
98A480ILE00.0230.02726.6440.1260.1260.0000.0000.0000.000
99A481PRO00.0200.00722.043-0.420-0.4200.0000.0000.0000.000
100A482PHE00.0500.00619.1790.3060.3060.0000.0000.0000.000
101A483ASN0-0.058-0.01421.953-0.093-0.0930.0000.0000.0000.000
102A484SER00.0470.00625.3630.6910.6910.0000.0000.0000.000
103A485THR00.0140.01226.155-0.493-0.4930.0000.0000.0000.000
104A486ASN0-0.034-0.02125.9590.1220.1220.0000.0000.0000.000
105A487LYS10.9200.96718.77715.89515.8950.0000.0000.0000.000
106A488TYR00.0370.03521.480-0.660-0.6600.0000.0000.0000.000
107A489GLN0-0.072-0.04619.1310.0080.0080.0000.0000.0000.000
108A490LEU0-0.010-0.01022.859-0.047-0.0470.0000.0000.0000.000
109A491SER0-0.014-0.00425.696-0.156-0.1560.0000.0000.0000.000
110A492ILE00.0080.00827.4130.0600.0600.0000.0000.0000.000
111A493HIS00.0510.01827.1000.3500.3500.0000.0000.0000.000
112A494LYS10.8840.96432.3748.4868.4860.0000.0000.0000.000
113A495ASN0-0.018-0.02035.110-0.253-0.2530.0000.0000.0000.000
114A496PRO0-0.079-0.02335.5610.2770.2770.0000.0000.0000.000
115A497ASN0-0.016-0.03137.9840.2910.2910.0000.0000.0000.000
116A498ALA0-0.027-0.01336.499-0.212-0.2120.0000.0000.0000.000
117A499SER00.005-0.00238.2040.1460.1460.0000.0000.0000.000
118A500GLU-1-0.791-0.86533.932-9.279-9.2790.0000.0000.0000.000
119A501PRO00.0300.02037.7330.0820.0820.0000.0000.0000.000
120A502LYS10.9280.97737.7947.5287.5280.0000.0000.0000.000
121A503HIS00.0090.01436.418-0.442-0.4420.0000.0000.0000.000
122A504LEU00.0000.00830.1310.0030.0030.0000.0000.0000.000
123A505LEU00.0170.01829.517-0.144-0.1440.0000.0000.0000.000
124A506VAL0-0.007-0.01026.036-0.004-0.0040.0000.0000.0000.000
125A507MET00.007-0.00324.4500.0040.0040.0000.0000.0000.000
126A508LYS10.7820.89018.15315.85015.8500.0000.0000.0000.000
127A509GLY00.0810.02619.4600.2540.2540.0000.0000.0000.000
128A510ALA00.0410.02018.641-0.190-0.1900.0000.0000.0000.000
129A511PRO0-0.0010.00418.7220.7760.7760.0000.0000.0000.000
130A512GLU-1-0.811-0.90621.667-12.329-12.3290.0000.0000.0000.000
131A513ARG10.8370.88320.25515.55715.5570.0000.0000.0000.000
132A514ILE0-0.0150.00422.3320.3550.3550.0000.0000.0000.000
133A515LEU00.0340.02525.8090.5370.5370.0000.0000.0000.000
134A516ASP-1-0.941-0.96827.716-10.598-10.5980.0000.0000.0000.000
135A517ARG10.8050.92027.85111.57911.5790.0000.0000.0000.000
136A518CYS0-0.111-0.04428.9070.0750.0750.0000.0000.0000.000
137A519SER00.0410.02631.7300.2270.2270.0000.0000.0000.000
138A520SER0-0.011-0.01934.2110.3600.3600.0000.0000.0000.000
139A521ILE00.0140.02130.245-0.392-0.3920.0000.0000.0000.000
140A522LEU0-0.0070.00431.9050.3140.3140.0000.0000.0000.000
141A523LEU00.0420.03531.837-0.288-0.2880.0000.0000.0000.000
142A524HIS00.012-0.02634.4700.2620.2620.0000.0000.0000.000
143A525GLY0-0.014-0.00135.4560.2570.2570.0000.0000.0000.000
144A526LYS10.8130.90337.0258.3338.3330.0000.0000.0000.000
145A527GLU-1-0.842-0.91936.283-9.088-9.0880.0000.0000.0000.000
146A528GLN0-0.047-0.02236.4640.2490.2490.0000.0000.0000.000
147A529PRO00.0450.03036.775-0.220-0.2200.0000.0000.0000.000
148A530LEU0-0.011-0.00931.493-0.056-0.0560.0000.0000.0000.000
149A531ASP-1-0.834-0.91335.779-8.225-8.2250.0000.0000.0000.000
150A532GLU-1-0.998-1.02134.985-8.726-8.7260.0000.0000.0000.000
151A533GLU-1-0.941-0.97234.129-9.330-9.3300.0000.0000.0000.000
152A534LEU0-0.019-0.02232.910-0.259-0.2590.0000.0000.0000.000
153A535LYS10.8890.97430.4569.3889.3880.0000.0000.0000.000
154A536ASP-1-0.863-0.92529.294-11.028-11.0280.0000.0000.0000.000
155A537ALA00.0290.01728.905-0.441-0.4410.0000.0000.0000.000
156A538PHE0-0.036-0.00422.775-0.555-0.5550.0000.0000.0000.000
157A539GLN00.003-0.02624.991-0.282-0.2820.0000.0000.0000.000
158A540ASN0-0.040-0.02724.369-0.957-0.9570.0000.0000.0000.000
159A541ALA00.0180.02223.304-0.467-0.4670.0000.0000.0000.000
160A542TYR0-0.053-0.03717.473-0.818-0.8180.0000.0000.0000.000
161A543LEU0-0.042-0.03019.617-0.924-0.9240.0000.0000.0000.000
162A544GLU-1-0.918-0.94919.854-15.804-15.8040.0000.0000.0000.000
163A545LEU0-0.094-0.05017.022-0.983-0.9830.0000.0000.0000.000
164A546GLY0-0.0150.00615.300-1.514-1.5140.0000.0000.0000.000
165A547GLY0-0.025-0.01214.838-1.529-1.5290.0000.0000.0000.000
166A548LEU0-0.016-0.01511.4430.0700.0700.0000.0000.0000.000
167A549GLY00.0140.00215.2550.2700.2700.0000.0000.0000.000
168A550GLU-1-0.849-0.88814.832-16.910-16.9100.0000.0000.0000.000
169A551ARG10.7290.8649.06629.24829.2480.0000.0000.0000.000
170A552VAL00.0660.03912.806-0.220-0.2200.0000.0000.0000.000
171A553LEU0-0.021-0.02515.4130.4780.4780.0000.0000.0000.000
172A554GLY00.014-0.00817.9370.2500.2500.0000.0000.0000.000
173A555PHE0-0.042-0.02117.6210.3990.3990.0000.0000.0000.000
174A556CYS00.0480.05222.8770.2340.2340.0000.0000.0000.000
175A557HIS00.0450.00126.653-0.157-0.1570.0000.0000.0000.000
176A558LEU00.0500.01529.8870.0740.0740.0000.0000.0000.000
177A559LEU0-0.074-0.02833.2370.2570.2570.0000.0000.0000.000
178A560LEU00.0400.02334.5830.2260.2260.0000.0000.0000.000
179A561PRO00.0450.03937.3730.0820.0820.0000.0000.0000.000
180A562ASP-1-0.897-0.97840.970-7.450-7.4500.0000.0000.0000.000
181A563GLU-1-0.930-0.94843.003-6.768-6.7680.0000.0000.0000.000
182A564GLN0-0.077-0.04643.5520.0280.0280.0000.0000.0000.000
183A565PHE0-0.035-0.02139.087-0.029-0.0290.0000.0000.0000.000
184A566PRO00.0190.01242.3440.0910.0910.0000.0000.0000.000
185A567GLU-1-0.906-0.96443.184-6.824-6.8240.0000.0000.0000.000
186A568GLY0-0.009-0.00744.049-0.028-0.0280.0000.0000.0000.000
187A569PHE0-0.025-0.04038.746-0.128-0.1280.0000.0000.0000.000
188A570GLN0-0.045-0.02038.927-0.095-0.0950.0000.0000.0000.000
189A571PHE0-0.015-0.00835.9530.0110.0110.0000.0000.0000.000
190A572ASP-1-0.773-0.87435.486-9.130-9.1300.0000.0000.0000.000
191A573THR0-0.138-0.10530.492-0.322-0.3220.0000.0000.0000.000
192A574ASP-1-0.950-0.96232.983-9.086-9.0860.0000.0000.0000.000
193A575GLU-1-0.907-0.95235.819-7.730-7.7300.0000.0000.0000.000
194A576VAL0-0.051-0.01833.3040.1190.1190.0000.0000.0000.000
195A577ASN0-0.051-0.02536.6750.1070.1070.0000.0000.0000.000
196A578PHE00.0110.00730.8140.1150.1150.0000.0000.0000.000
197A579PRO0-0.009-0.00135.863-0.090-0.0900.0000.0000.0000.000
198A580VAL0-0.015-0.02730.789-0.237-0.2370.0000.0000.0000.000
199A581ASP-1-0.931-0.97831.221-9.829-9.8290.0000.0000.0000.000
200A582ASN00.0110.00233.3260.3910.3910.0000.0000.0000.000
201A583LEU0-0.047-0.01528.5970.0890.0890.0000.0000.0000.000
202A584CYS0-0.031-0.01631.8700.0580.0580.0000.0000.0000.000
203A585PHE00.006-0.03525.511-0.353-0.3530.0000.0000.0000.000
204A586VAL0-0.079-0.04727.361-0.393-0.3930.0000.0000.0000.000
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206A588LEU0-0.045-0.00820.391-0.275-0.2750.0000.0000.0000.000
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