FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 2GZ3R

Calculation Name: 2FQH-A-Other549

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 2FQH

Chain ID: A

ChEMBL ID:

UniProt ID: Q9HJM9

Base Structure: SolutionNMR

Registration Date: 2025-10-11

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement ac.sh, 23 2024 Oct
Water No
Procedure Manual calculation
Remarks
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 109
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -810896.658215
FMO2-HF: Nuclear repulsion 766357.605742
FMO2-HF: Total energy -44539.052473
FMO2-MP2: Total energy -44662.928721


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:MET)


Summations of interaction energy for fragment #1(A:1:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-84.139-79.8920.385-1.732-2.901-0.013
Interaction energy analysis for fragmet #1(A:1:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.805 / q_NPA : 0.884
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3GLU-1-0.905-0.9513.857-35.176-33.287-0.019-0.794-1.077-0.003
75A75TYR0-0.025-0.0252.566-8.989-7.7110.328-0.674-0.932-0.008
79A79ARG10.8320.9052.90349.75650.3920.060-0.160-0.536-0.001
80A80ASN00.0380.0344.9772.0592.187-0.001-0.005-0.1220.000
81A81VAL0-0.053-0.0273.355-5.545-5.2290.017-0.099-0.234-0.001
4A4VAL00.0590.0506.1270.6260.6260.0000.0000.0000.000
5A5ASN00.022-0.0069.5350.3070.3070.0000.0000.0000.000
6A6ILE00.0090.01011.9610.9460.9460.0000.0000.0000.000
7A7VAL0-0.0030.00215.4970.8340.8340.0000.0000.0000.000
8A8VAL00.0210.00218.541-0.038-0.0380.0000.0000.0000.000
9A9ASN0-0.019-0.00221.9140.5710.5710.0000.0000.0000.000
10A10GLY00.0520.02125.2260.0460.0460.0000.0000.0000.000
11A11ARG10.9200.95926.25610.22510.2250.0000.0000.0000.000
12A12GLU-1-0.859-0.92421.981-13.779-13.7790.0000.0000.0000.000
13A13ALA00.0090.00323.944-0.293-0.2930.0000.0000.0000.000
14A14GLY00.0310.01323.2290.3840.3840.0000.0000.0000.000
15A15SER0-0.085-0.06018.2380.1610.1610.0000.0000.0000.000
16A16LYS10.9250.94716.41017.80117.8010.0000.0000.0000.000
17A17SER00.0360.03219.9970.6810.6810.0000.0000.0000.000
18A18LYS10.8010.89921.23411.58911.5890.0000.0000.0000.000
19A19GLY00.0230.01823.5440.5440.5440.0000.0000.0000.000
20A20CYS0-0.049-0.03522.3420.4200.4200.0000.0000.0000.000
21A21ALA00.0680.03917.219-0.134-0.1340.0000.0000.0000.000
22A22LEU00.0340.03317.540-0.544-0.5440.0000.0000.0000.000
23A23CYS0-0.048-0.05118.9710.1170.1170.0000.0000.0000.000
24A24GLY00.0070.02521.1570.4420.4420.0000.0000.0000.000
25A25ALA0-0.042-0.02222.9550.3010.3010.0000.0000.0000.000
26A26THR0-0.036-0.02526.2980.4970.4970.0000.0000.0000.000
27A27TRP00.016-0.00826.722-0.276-0.2760.0000.0000.0000.000
28A28GLY00.0110.00528.0120.4760.4760.0000.0000.0000.000
29A29ASP-1-0.841-0.92527.772-10.869-10.8690.0000.0000.0000.000
30A30TYR0-0.058-0.02729.1300.0310.0310.0000.0000.0000.000
31A31HIS0-0.032-0.00427.8320.5310.5310.0000.0000.0000.000
32A32ALA0-0.017-0.00326.625-0.196-0.1960.0000.0000.0000.000
33A33ASP-1-0.822-0.89121.964-13.968-13.9680.0000.0000.0000.000
34A34PHE00.0110.00919.7340.2160.2160.0000.0000.0000.000
35A35LEU0-0.043-0.03114.3110.0870.0870.0000.0000.0000.000
36A36GLY00.0530.01615.076-1.153-1.1530.0000.0000.0000.000
37A37GLU-1-0.873-0.91715.079-17.636-17.6360.0000.0000.0000.000
38A38ASP-1-0.845-0.92017.688-15.601-15.6010.0000.0000.0000.000
39A39LEU00.0050.02320.4350.3070.3070.0000.0000.0000.000
40A40PHE00.0440.00524.1960.0460.0460.0000.0000.0000.000
41A41PHE0-0.021-0.01725.9590.4220.4220.0000.0000.0000.000
42A42CYS0-0.044-0.00627.4350.4050.4050.0000.0000.0000.000
43A43CYS0-0.026-0.02726.5370.3550.3550.0000.0000.0000.000
44A44ASP-1-0.898-0.94426.546-10.837-10.8370.0000.0000.0000.000
45A45ILE0-0.040-0.01026.225-0.272-0.2720.0000.0000.0000.000
46A46CYS0-0.077-0.04622.469-0.177-0.1770.0000.0000.0000.000
47A47ALA00.0010.00621.197-0.669-0.6690.0000.0000.0000.000
48A48ALA00.001-0.01221.5170.2920.2920.0000.0000.0000.000
49A49GLU-1-0.949-0.95516.776-18.296-18.2960.0000.0000.0000.000
50A50PHE0-0.020-0.01617.954-0.541-0.5410.0000.0000.0000.000
51A51MET0-0.056-0.02612.6960.0810.0810.0000.0000.0000.000
52A52ASN0-0.051-0.02713.295-3.611-3.6110.0000.0000.0000.000
53A53MET00.0060.00712.6050.5720.5720.0000.0000.0000.000
54A54MET00.0570.01316.4840.5500.5500.0000.0000.0000.000
55A55ASP-1-0.921-0.96217.351-17.759-17.7590.0000.0000.0000.000
56A56GLU-1-0.807-0.90918.193-16.682-16.6820.0000.0000.0000.000
57A57ALA00.0060.00619.8770.5830.5830.0000.0000.0000.000
58A58PHE0-0.013-0.01322.9530.6780.6780.0000.0000.0000.000
59A59LYS10.8410.92218.24516.62216.6220.0000.0000.0000.000
60A60HIS00.0150.00822.7480.2050.2050.0000.0000.0000.000
61A61THR0-0.026-0.03025.4490.5640.5640.0000.0000.0000.000
62A62ALA0-0.0190.00125.0400.4540.4540.0000.0000.0000.000
63A63ARG10.7860.87320.93614.35714.3570.0000.0000.0000.000
64A64HIS0-0.039-0.00826.8320.1580.1580.0000.0000.0000.000
65A65ASN0-0.115-0.05930.1460.5210.5210.0000.0000.0000.000
66A66VAL00.0020.01129.2770.2820.2820.0000.0000.0000.000
67A67ASP-1-0.973-0.97825.614-11.845-11.8450.0000.0000.0000.000
68A68GLU-1-0.840-0.93022.744-13.577-13.5770.0000.0000.0000.000
69A69LEU0-0.056-0.01017.264-0.464-0.4640.0000.0000.0000.000
70A70HIS10.8610.91617.47315.59815.5980.0000.0000.0000.000
71A71ILE00.0070.02410.8570.1440.1440.0000.0000.0000.000
72A72ASP-1-0.870-0.93111.722-23.190-23.1900.0000.0000.0000.000
73A73GLY00.0420.0237.630-2.145-2.1450.0000.0000.0000.000
74A74ASN0-0.008-0.0107.682-0.444-0.4440.0000.0000.0000.000
76A76GLN0-0.041-0.0405.430-1.583-1.5830.0000.0000.0000.000
77A77LEU00.0340.0457.8031.5141.5140.0000.0000.0000.000
78A78GLY00.0510.0337.3432.3832.3830.0000.0000.0000.000
82A82LEU00.0130.0116.5983.0643.0640.0000.0000.0000.000
83A83LEU00.0190.0269.8060.9380.9380.0000.0000.0000.000
84A84LYS10.8420.91411.63817.21617.2160.0000.0000.0000.000
85A85ASN0-0.058-0.04515.475-0.466-0.4660.0000.0000.0000.000
86A86GLY00.0890.03017.8420.0900.0900.0000.0000.0000.000
87A87GLU-1-1.008-0.99721.404-13.909-13.9090.0000.0000.0000.000
88A88ASP-1-0.870-0.92124.209-10.088-10.0880.0000.0000.0000.000
89A89ARG10.7460.85825.92711.06711.0670.0000.0000.0000.000
90A90LEU00.0590.03130.4160.3160.3160.0000.0000.0000.000
91A91ARG10.9540.95734.1248.1198.1190.0000.0000.0000.000
92A92PHE00.0280.03035.3580.1520.1520.0000.0000.0000.000
93A93TYR00.0000.01329.109-0.112-0.1120.0000.0000.0000.000
94A94VAL00.0470.01333.9770.0440.0440.0000.0000.0000.000
95A95LYS10.9480.95730.2749.6759.6750.0000.0000.0000.000
96A96PHE0-0.033-0.01030.579-0.259-0.2590.0000.0000.0000.000
97A97GLY00.0490.04226.863-0.104-0.1040.0000.0000.0000.000
98A98PRO00.009-0.01523.9790.0080.0080.0000.0000.0000.000
99A99GLY00.009-0.00223.095-0.191-0.1910.0000.0000.0000.000
100A100ALA00.0590.04219.341-0.456-0.4560.0000.0000.0000.000
101A101VAL00.0910.03913.6760.4890.4890.0000.0000.0000.000
102A102ILE0-0.0050.00716.467-0.176-0.1760.0000.0000.0000.000
103A103LYS10.8460.92618.45413.63213.6320.0000.0000.0000.000
104A104GLU-1-0.808-0.91012.893-21.532-21.5320.0000.0000.0000.000
105A105PHE00.0580.02213.9010.1530.1530.0000.0000.0000.000
106A106LYS10.7400.84716.74213.90413.9040.0000.0000.0000.000
107A107ILE0-0.045-0.00416.1980.6340.6340.0000.0000.0000.000
108A108THR0-0.083-0.04417.953-0.039-0.0390.0000.0000.0000.000
109A109ASP-2-1.731-1.83219.461-26.760-26.7600.0000.0000.0000.000