FMODB ID: 2GZ3R
Calculation Name: 2FQH-A-Other549
Preferred Name:
Target Type:
Ligand Name:
Ligand 3-letter code:
Ligand of Interest (LOI):
Structure Source: PDB
PDB ID: 2FQH
Chain ID: A
UniProt ID: Q9HJM9
Base Structure: SolutionNMR
Registration Date: 2025-10-11
Reference: Sci Data 11, 1164 (2024).
DOI: https://doi.org/10.1038/s41597-024-03999-2
Apendix: None
Modeling method
| Optimization | MOE:Amber10:EHT |
|---|---|
| Restraint | OptH |
| Protonation | MOE:Protonate 3D |
| Complement | ac.sh, 23 2024 Oct |
| Water | No |
| Procedure | Manual calculation |
| Remarks |
FMO calculation
| FMO method | FMO2-MP2/6-31G(d) |
|---|---|
| Fragmentation | Auto |
| Number of fragment | 109 |
| LigandResidueName | |
| LigandFragmentNumber | 0 |
| LigandCharge | |
| Software | ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922 |
Total energy (hartree)
| FMO2-HF: Electronic energy | -810896.658215 |
|---|---|
| FMO2-HF: Nuclear repulsion | 766357.605742 |
| FMO2-HF: Total energy | -44539.052473 |
| FMO2-MP2: Total energy | -44662.928721 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
| IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
|---|---|---|---|---|---|
| IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
| N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(A:1:MET)
Summations of interaction energy for
fragment #1(A:1:MET)
| IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
|---|---|---|---|---|---|
| IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
| -84.139 | -79.892 | 0.385 | -1.732 | -2.901 | -0.013 |
Interaction energy analysis for fragmet #1(A:1:MET)
| frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3 | A | 3 | GLU | -1 | -0.905 | -0.951 | 3.857 | -35.176 | -33.287 | -0.019 | -0.794 | -1.077 | -0.003 |
| 75 | A | 75 | TYR | 0 | -0.025 | -0.025 | 2.566 | -8.989 | -7.711 | 0.328 | -0.674 | -0.932 | -0.008 |
| 79 | A | 79 | ARG | 1 | 0.832 | 0.905 | 2.903 | 49.756 | 50.392 | 0.060 | -0.160 | -0.536 | -0.001 |
| 80 | A | 80 | ASN | 0 | 0.038 | 0.034 | 4.977 | 2.059 | 2.187 | -0.001 | -0.005 | -0.122 | 0.000 |
| 81 | A | 81 | VAL | 0 | -0.053 | -0.027 | 3.355 | -5.545 | -5.229 | 0.017 | -0.099 | -0.234 | -0.001 |
| 4 | A | 4 | VAL | 0 | 0.059 | 0.050 | 6.127 | 0.626 | 0.626 | 0.000 | 0.000 | 0.000 | 0.000 |
| 5 | A | 5 | ASN | 0 | 0.022 | -0.006 | 9.535 | 0.307 | 0.307 | 0.000 | 0.000 | 0.000 | 0.000 |
| 6 | A | 6 | ILE | 0 | 0.009 | 0.010 | 11.961 | 0.946 | 0.946 | 0.000 | 0.000 | 0.000 | 0.000 |
| 7 | A | 7 | VAL | 0 | -0.003 | 0.002 | 15.497 | 0.834 | 0.834 | 0.000 | 0.000 | 0.000 | 0.000 |
| 8 | A | 8 | VAL | 0 | 0.021 | 0.002 | 18.541 | -0.038 | -0.038 | 0.000 | 0.000 | 0.000 | 0.000 |
| 9 | A | 9 | ASN | 0 | -0.019 | -0.002 | 21.914 | 0.571 | 0.571 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10 | A | 10 | GLY | 0 | 0.052 | 0.021 | 25.226 | 0.046 | 0.046 | 0.000 | 0.000 | 0.000 | 0.000 |
| 11 | A | 11 | ARG | 1 | 0.920 | 0.959 | 26.256 | 10.225 | 10.225 | 0.000 | 0.000 | 0.000 | 0.000 |
| 12 | A | 12 | GLU | -1 | -0.859 | -0.924 | 21.981 | -13.779 | -13.779 | 0.000 | 0.000 | 0.000 | 0.000 |
| 13 | A | 13 | ALA | 0 | 0.009 | 0.003 | 23.944 | -0.293 | -0.293 | 0.000 | 0.000 | 0.000 | 0.000 |
| 14 | A | 14 | GLY | 0 | 0.031 | 0.013 | 23.229 | 0.384 | 0.384 | 0.000 | 0.000 | 0.000 | 0.000 |
| 15 | A | 15 | SER | 0 | -0.085 | -0.060 | 18.238 | 0.161 | 0.161 | 0.000 | 0.000 | 0.000 | 0.000 |
| 16 | A | 16 | LYS | 1 | 0.925 | 0.947 | 16.410 | 17.801 | 17.801 | 0.000 | 0.000 | 0.000 | 0.000 |
| 17 | A | 17 | SER | 0 | 0.036 | 0.032 | 19.997 | 0.681 | 0.681 | 0.000 | 0.000 | 0.000 | 0.000 |
| 18 | A | 18 | LYS | 1 | 0.801 | 0.899 | 21.234 | 11.589 | 11.589 | 0.000 | 0.000 | 0.000 | 0.000 |
| 19 | A | 19 | GLY | 0 | 0.023 | 0.018 | 23.544 | 0.544 | 0.544 | 0.000 | 0.000 | 0.000 | 0.000 |
| 20 | A | 20 | CYS | 0 | -0.049 | -0.035 | 22.342 | 0.420 | 0.420 | 0.000 | 0.000 | 0.000 | 0.000 |
| 21 | A | 21 | ALA | 0 | 0.068 | 0.039 | 17.219 | -0.134 | -0.134 | 0.000 | 0.000 | 0.000 | 0.000 |
| 22 | A | 22 | LEU | 0 | 0.034 | 0.033 | 17.540 | -0.544 | -0.544 | 0.000 | 0.000 | 0.000 | 0.000 |
| 23 | A | 23 | CYS | 0 | -0.048 | -0.051 | 18.971 | 0.117 | 0.117 | 0.000 | 0.000 | 0.000 | 0.000 |
| 24 | A | 24 | GLY | 0 | 0.007 | 0.025 | 21.157 | 0.442 | 0.442 | 0.000 | 0.000 | 0.000 | 0.000 |
| 25 | A | 25 | ALA | 0 | -0.042 | -0.022 | 22.955 | 0.301 | 0.301 | 0.000 | 0.000 | 0.000 | 0.000 |
| 26 | A | 26 | THR | 0 | -0.036 | -0.025 | 26.298 | 0.497 | 0.497 | 0.000 | 0.000 | 0.000 | 0.000 |
| 27 | A | 27 | TRP | 0 | 0.016 | -0.008 | 26.722 | -0.276 | -0.276 | 0.000 | 0.000 | 0.000 | 0.000 |
| 28 | A | 28 | GLY | 0 | 0.011 | 0.005 | 28.012 | 0.476 | 0.476 | 0.000 | 0.000 | 0.000 | 0.000 |
| 29 | A | 29 | ASP | -1 | -0.841 | -0.925 | 27.772 | -10.869 | -10.869 | 0.000 | 0.000 | 0.000 | 0.000 |
| 30 | A | 30 | TYR | 0 | -0.058 | -0.027 | 29.130 | 0.031 | 0.031 | 0.000 | 0.000 | 0.000 | 0.000 |
| 31 | A | 31 | HIS | 0 | -0.032 | -0.004 | 27.832 | 0.531 | 0.531 | 0.000 | 0.000 | 0.000 | 0.000 |
| 32 | A | 32 | ALA | 0 | -0.017 | -0.003 | 26.625 | -0.196 | -0.196 | 0.000 | 0.000 | 0.000 | 0.000 |
| 33 | A | 33 | ASP | -1 | -0.822 | -0.891 | 21.964 | -13.968 | -13.968 | 0.000 | 0.000 | 0.000 | 0.000 |
| 34 | A | 34 | PHE | 0 | 0.011 | 0.009 | 19.734 | 0.216 | 0.216 | 0.000 | 0.000 | 0.000 | 0.000 |
| 35 | A | 35 | LEU | 0 | -0.043 | -0.031 | 14.311 | 0.087 | 0.087 | 0.000 | 0.000 | 0.000 | 0.000 |
| 36 | A | 36 | GLY | 0 | 0.053 | 0.016 | 15.076 | -1.153 | -1.153 | 0.000 | 0.000 | 0.000 | 0.000 |
| 37 | A | 37 | GLU | -1 | -0.873 | -0.917 | 15.079 | -17.636 | -17.636 | 0.000 | 0.000 | 0.000 | 0.000 |
| 38 | A | 38 | ASP | -1 | -0.845 | -0.920 | 17.688 | -15.601 | -15.601 | 0.000 | 0.000 | 0.000 | 0.000 |
| 39 | A | 39 | LEU | 0 | 0.005 | 0.023 | 20.435 | 0.307 | 0.307 | 0.000 | 0.000 | 0.000 | 0.000 |
| 40 | A | 40 | PHE | 0 | 0.044 | 0.005 | 24.196 | 0.046 | 0.046 | 0.000 | 0.000 | 0.000 | 0.000 |
| 41 | A | 41 | PHE | 0 | -0.021 | -0.017 | 25.959 | 0.422 | 0.422 | 0.000 | 0.000 | 0.000 | 0.000 |
| 42 | A | 42 | CYS | 0 | -0.044 | -0.006 | 27.435 | 0.405 | 0.405 | 0.000 | 0.000 | 0.000 | 0.000 |
| 43 | A | 43 | CYS | 0 | -0.026 | -0.027 | 26.537 | 0.355 | 0.355 | 0.000 | 0.000 | 0.000 | 0.000 |
| 44 | A | 44 | ASP | -1 | -0.898 | -0.944 | 26.546 | -10.837 | -10.837 | 0.000 | 0.000 | 0.000 | 0.000 |
| 45 | A | 45 | ILE | 0 | -0.040 | -0.010 | 26.225 | -0.272 | -0.272 | 0.000 | 0.000 | 0.000 | 0.000 |
| 46 | A | 46 | CYS | 0 | -0.077 | -0.046 | 22.469 | -0.177 | -0.177 | 0.000 | 0.000 | 0.000 | 0.000 |
| 47 | A | 47 | ALA | 0 | 0.001 | 0.006 | 21.197 | -0.669 | -0.669 | 0.000 | 0.000 | 0.000 | 0.000 |
| 48 | A | 48 | ALA | 0 | 0.001 | -0.012 | 21.517 | 0.292 | 0.292 | 0.000 | 0.000 | 0.000 | 0.000 |
| 49 | A | 49 | GLU | -1 | -0.949 | -0.955 | 16.776 | -18.296 | -18.296 | 0.000 | 0.000 | 0.000 | 0.000 |
| 50 | A | 50 | PHE | 0 | -0.020 | -0.016 | 17.954 | -0.541 | -0.541 | 0.000 | 0.000 | 0.000 | 0.000 |
| 51 | A | 51 | MET | 0 | -0.056 | -0.026 | 12.696 | 0.081 | 0.081 | 0.000 | 0.000 | 0.000 | 0.000 |
| 52 | A | 52 | ASN | 0 | -0.051 | -0.027 | 13.295 | -3.611 | -3.611 | 0.000 | 0.000 | 0.000 | 0.000 |
| 53 | A | 53 | MET | 0 | 0.006 | 0.007 | 12.605 | 0.572 | 0.572 | 0.000 | 0.000 | 0.000 | 0.000 |
| 54 | A | 54 | MET | 0 | 0.057 | 0.013 | 16.484 | 0.550 | 0.550 | 0.000 | 0.000 | 0.000 | 0.000 |
| 55 | A | 55 | ASP | -1 | -0.921 | -0.962 | 17.351 | -17.759 | -17.759 | 0.000 | 0.000 | 0.000 | 0.000 |
| 56 | A | 56 | GLU | -1 | -0.807 | -0.909 | 18.193 | -16.682 | -16.682 | 0.000 | 0.000 | 0.000 | 0.000 |
| 57 | A | 57 | ALA | 0 | 0.006 | 0.006 | 19.877 | 0.583 | 0.583 | 0.000 | 0.000 | 0.000 | 0.000 |
| 58 | A | 58 | PHE | 0 | -0.013 | -0.013 | 22.953 | 0.678 | 0.678 | 0.000 | 0.000 | 0.000 | 0.000 |
| 59 | A | 59 | LYS | 1 | 0.841 | 0.922 | 18.245 | 16.622 | 16.622 | 0.000 | 0.000 | 0.000 | 0.000 |
| 60 | A | 60 | HIS | 0 | 0.015 | 0.008 | 22.748 | 0.205 | 0.205 | 0.000 | 0.000 | 0.000 | 0.000 |
| 61 | A | 61 | THR | 0 | -0.026 | -0.030 | 25.449 | 0.564 | 0.564 | 0.000 | 0.000 | 0.000 | 0.000 |
| 62 | A | 62 | ALA | 0 | -0.019 | 0.001 | 25.040 | 0.454 | 0.454 | 0.000 | 0.000 | 0.000 | 0.000 |
| 63 | A | 63 | ARG | 1 | 0.786 | 0.873 | 20.936 | 14.357 | 14.357 | 0.000 | 0.000 | 0.000 | 0.000 |
| 64 | A | 64 | HIS | 0 | -0.039 | -0.008 | 26.832 | 0.158 | 0.158 | 0.000 | 0.000 | 0.000 | 0.000 |
| 65 | A | 65 | ASN | 0 | -0.115 | -0.059 | 30.146 | 0.521 | 0.521 | 0.000 | 0.000 | 0.000 | 0.000 |
| 66 | A | 66 | VAL | 0 | 0.002 | 0.011 | 29.277 | 0.282 | 0.282 | 0.000 | 0.000 | 0.000 | 0.000 |
| 67 | A | 67 | ASP | -1 | -0.973 | -0.978 | 25.614 | -11.845 | -11.845 | 0.000 | 0.000 | 0.000 | 0.000 |
| 68 | A | 68 | GLU | -1 | -0.840 | -0.930 | 22.744 | -13.577 | -13.577 | 0.000 | 0.000 | 0.000 | 0.000 |
| 69 | A | 69 | LEU | 0 | -0.056 | -0.010 | 17.264 | -0.464 | -0.464 | 0.000 | 0.000 | 0.000 | 0.000 |
| 70 | A | 70 | HIS | 1 | 0.861 | 0.916 | 17.473 | 15.598 | 15.598 | 0.000 | 0.000 | 0.000 | 0.000 |
| 71 | A | 71 | ILE | 0 | 0.007 | 0.024 | 10.857 | 0.144 | 0.144 | 0.000 | 0.000 | 0.000 | 0.000 |
| 72 | A | 72 | ASP | -1 | -0.870 | -0.931 | 11.722 | -23.190 | -23.190 | 0.000 | 0.000 | 0.000 | 0.000 |
| 73 | A | 73 | GLY | 0 | 0.042 | 0.023 | 7.630 | -2.145 | -2.145 | 0.000 | 0.000 | 0.000 | 0.000 |
| 74 | A | 74 | ASN | 0 | -0.008 | -0.010 | 7.682 | -0.444 | -0.444 | 0.000 | 0.000 | 0.000 | 0.000 |
| 76 | A | 76 | GLN | 0 | -0.041 | -0.040 | 5.430 | -1.583 | -1.583 | 0.000 | 0.000 | 0.000 | 0.000 |
| 77 | A | 77 | LEU | 0 | 0.034 | 0.045 | 7.803 | 1.514 | 1.514 | 0.000 | 0.000 | 0.000 | 0.000 |
| 78 | A | 78 | GLY | 0 | 0.051 | 0.033 | 7.343 | 2.383 | 2.383 | 0.000 | 0.000 | 0.000 | 0.000 |
| 82 | A | 82 | LEU | 0 | 0.013 | 0.011 | 6.598 | 3.064 | 3.064 | 0.000 | 0.000 | 0.000 | 0.000 |
| 83 | A | 83 | LEU | 0 | 0.019 | 0.026 | 9.806 | 0.938 | 0.938 | 0.000 | 0.000 | 0.000 | 0.000 |
| 84 | A | 84 | LYS | 1 | 0.842 | 0.914 | 11.638 | 17.216 | 17.216 | 0.000 | 0.000 | 0.000 | 0.000 |
| 85 | A | 85 | ASN | 0 | -0.058 | -0.045 | 15.475 | -0.466 | -0.466 | 0.000 | 0.000 | 0.000 | 0.000 |
| 86 | A | 86 | GLY | 0 | 0.089 | 0.030 | 17.842 | 0.090 | 0.090 | 0.000 | 0.000 | 0.000 | 0.000 |
| 87 | A | 87 | GLU | -1 | -1.008 | -0.997 | 21.404 | -13.909 | -13.909 | 0.000 | 0.000 | 0.000 | 0.000 |
| 88 | A | 88 | ASP | -1 | -0.870 | -0.921 | 24.209 | -10.088 | -10.088 | 0.000 | 0.000 | 0.000 | 0.000 |
| 89 | A | 89 | ARG | 1 | 0.746 | 0.858 | 25.927 | 11.067 | 11.067 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90 | A | 90 | LEU | 0 | 0.059 | 0.031 | 30.416 | 0.316 | 0.316 | 0.000 | 0.000 | 0.000 | 0.000 |
| 91 | A | 91 | ARG | 1 | 0.954 | 0.957 | 34.124 | 8.119 | 8.119 | 0.000 | 0.000 | 0.000 | 0.000 |
| 92 | A | 92 | PHE | 0 | 0.028 | 0.030 | 35.358 | 0.152 | 0.152 | 0.000 | 0.000 | 0.000 | 0.000 |
| 93 | A | 93 | TYR | 0 | 0.000 | 0.013 | 29.109 | -0.112 | -0.112 | 0.000 | 0.000 | 0.000 | 0.000 |
| 94 | A | 94 | VAL | 0 | 0.047 | 0.013 | 33.977 | 0.044 | 0.044 | 0.000 | 0.000 | 0.000 | 0.000 |
| 95 | A | 95 | LYS | 1 | 0.948 | 0.957 | 30.274 | 9.675 | 9.675 | 0.000 | 0.000 | 0.000 | 0.000 |
| 96 | A | 96 | PHE | 0 | -0.033 | -0.010 | 30.579 | -0.259 | -0.259 | 0.000 | 0.000 | 0.000 | 0.000 |
| 97 | A | 97 | GLY | 0 | 0.049 | 0.042 | 26.863 | -0.104 | -0.104 | 0.000 | 0.000 | 0.000 | 0.000 |
| 98 | A | 98 | PRO | 0 | 0.009 | -0.015 | 23.979 | 0.008 | 0.008 | 0.000 | 0.000 | 0.000 | 0.000 |
| 99 | A | 99 | GLY | 0 | 0.009 | -0.002 | 23.095 | -0.191 | -0.191 | 0.000 | 0.000 | 0.000 | 0.000 |
| 100 | A | 100 | ALA | 0 | 0.059 | 0.042 | 19.341 | -0.456 | -0.456 | 0.000 | 0.000 | 0.000 | 0.000 |
| 101 | A | 101 | VAL | 0 | 0.091 | 0.039 | 13.676 | 0.489 | 0.489 | 0.000 | 0.000 | 0.000 | 0.000 |
| 102 | A | 102 | ILE | 0 | -0.005 | 0.007 | 16.467 | -0.176 | -0.176 | 0.000 | 0.000 | 0.000 | 0.000 |
| 103 | A | 103 | LYS | 1 | 0.846 | 0.926 | 18.454 | 13.632 | 13.632 | 0.000 | 0.000 | 0.000 | 0.000 |
| 104 | A | 104 | GLU | -1 | -0.808 | -0.910 | 12.893 | -21.532 | -21.532 | 0.000 | 0.000 | 0.000 | 0.000 |
| 105 | A | 105 | PHE | 0 | 0.058 | 0.022 | 13.901 | 0.153 | 0.153 | 0.000 | 0.000 | 0.000 | 0.000 |
| 106 | A | 106 | LYS | 1 | 0.740 | 0.847 | 16.742 | 13.904 | 13.904 | 0.000 | 0.000 | 0.000 | 0.000 |
| 107 | A | 107 | ILE | 0 | -0.045 | -0.004 | 16.198 | 0.634 | 0.634 | 0.000 | 0.000 | 0.000 | 0.000 |
| 108 | A | 108 | THR | 0 | -0.083 | -0.044 | 17.953 | -0.039 | -0.039 | 0.000 | 0.000 | 0.000 | 0.000 |
| 109 | A | 109 | ASP | -2 | -1.731 | -1.832 | 19.461 | -26.760 | -26.760 | 0.000 | 0.000 | 0.000 | 0.000 |