FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37478

Number of unique PDB entries: 7783

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FMODB ID: 2J91R

Calculation Name: 4M66-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 4M66

Chain ID: A

ChEMBL ID:

UniProt ID: Q9QZL0

Base Structure: X-ray

Registration Date: 2023-09-19

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 271
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 22 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -3704555.548334
FMO2-HF: Nuclear repulsion 3598839.332648
FMO2-HF: Total energy -105716.215685
FMO2-MP2: Total energy -106026.846807


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:15:PRO)


Summations of interaction energy for fragment #1(A:15:PRO)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-6.313-0.5641.139-2.693-4.196-0.013
Interaction energy analysis for fragmet #1(A:15:PRO)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.034 / q_NPA : 0.010
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A17VAL00.0060.0103.700-0.9751.312-0.022-1.054-1.2120.002
4A18SER00.0570.0305.6770.2820.2820.0000.0000.0000.000
5A19ARG10.9310.9409.2790.3490.3490.0000.0000.0000.000
6A20GLU-1-0.962-0.97712.260-0.207-0.2070.0000.0000.0000.000
7A21GLU-1-0.900-0.9558.063-0.440-0.4400.0000.0000.0000.000
8A22LEU0-0.070-0.0269.2320.0010.0010.0000.0000.0000.000
9A23LYS10.9330.96912.6450.3680.3680.0000.0000.0000.000
10A24LYS10.8990.96016.2530.2890.2890.0000.0000.0000.000
11A25LEU0-0.053-0.02417.6710.0500.0500.0000.0000.0000.000
12A26GLU-1-0.880-0.94519.944-0.292-0.2920.0000.0000.0000.000
13A27PHE0-0.0050.00420.192-0.038-0.0380.0000.0000.0000.000
14A28VAL00.0170.01119.3100.0140.0140.0000.0000.0000.000
15A29GLY00.0340.01121.3170.0280.0280.0000.0000.0000.000
16A30LYS10.9350.96621.1310.1820.1820.0000.0000.0000.000
17A31GLY00.0130.00022.1390.0190.0190.0000.0000.0000.000
18A32GLY0-0.024-0.00622.256-0.007-0.0070.0000.0000.0000.000
19A33PHE00.0130.01617.9650.0010.0010.0000.0000.0000.000
20A34GLY00.004-0.00917.440-0.025-0.0250.0000.0000.0000.000
21A35VAL0-0.047-0.01917.4430.0410.0410.0000.0000.0000.000
22A36VAL00.0070.01215.903-0.063-0.0630.0000.0000.0000.000
23A37PHE00.004-0.00616.2980.0610.0610.0000.0000.0000.000
24A38ARG10.9280.99115.9170.2740.2740.0000.0000.0000.000
25A39ALA0-0.029-0.01813.4590.0370.0370.0000.0000.0000.000
26A40HIS0-0.026-0.02414.829-0.003-0.0030.0000.0000.0000.000
27A41HIS0-0.0020.0056.9740.1320.1320.0000.0000.0000.000
28A42ARG10.9080.93911.9130.4300.4300.0000.0000.0000.000
29A43THR00.0060.0089.9700.0250.0250.0000.0000.0000.000
30A44TRP0-0.039-0.0224.584-0.192-0.086-0.001-0.003-0.1020.000
31A45ASN0-0.035-0.00711.5570.0400.0400.0000.0000.0000.000
32A46HIS0-0.007-0.00110.5190.0190.0190.0000.0000.0000.000
33A47ASP-1-0.804-0.89913.528-0.468-0.4680.0000.0000.0000.000
34A48VAL0-0.060-0.0319.321-0.037-0.0370.0000.0000.0000.000
35A49ALA0-0.013-0.01912.4330.0960.0960.0000.0000.0000.000
36A50VAL0-0.014-0.01511.028-0.173-0.1730.0000.0000.0000.000
37A51LYS10.8800.92511.9780.6410.6410.0000.0000.0000.000
38A52ILE00.0080.00812.604-0.067-0.0670.0000.0000.0000.000
39A53VAL00.0020.00612.9280.0830.0830.0000.0000.0000.000
40A54ASN00.0370.01114.732-0.011-0.0110.0000.0000.0000.000
41A55SER00.1060.02814.953-0.012-0.0120.0000.0000.0000.000
42A56LYS10.9310.97815.8020.1530.1530.0000.0000.0000.000
43A57LYS10.9200.94716.6390.2220.2220.0000.0000.0000.000
44A58ILE00.0630.0449.8130.0170.0170.0000.0000.0000.000
45A59SER00.0020.00611.259-0.057-0.0570.0000.0000.0000.000
46A60TRP0-0.011-0.00612.2070.0430.0430.0000.0000.0000.000
47A61GLU-1-0.793-0.87911.377-0.524-0.5240.0000.0000.0000.000
48A62VAL00.0200.0036.529-0.031-0.0310.0000.0000.0000.000
49A63LYS10.8990.9648.8000.0600.0600.0000.0000.0000.000
50A64ALA0-0.055-0.02910.9340.0590.0590.0000.0000.0000.000
51A65MET00.025-0.0029.0220.0140.0140.0000.0000.0000.000
52A66VAL0-0.0270.0014.564-0.104-0.037-0.001-0.003-0.0630.000
53A67ASN0-0.056-0.0326.5720.0510.0510.0000.0000.0000.000
54A68LEU0-0.0250.0078.9780.0760.0760.0000.0000.0000.000
55A69ARG10.9240.9507.312-0.289-0.2890.0000.0000.0000.000
56A70ASN00.038-0.00712.2320.0490.0490.0000.0000.0000.000
57A71GLU-1-0.874-0.92814.799-0.282-0.2820.0000.0000.0000.000
58A72ASN00.0390.03416.963-0.031-0.0310.0000.0000.0000.000
59A73VAL0-0.041-0.01713.0960.0090.0090.0000.0000.0000.000
60A74LEU0-0.0260.00011.549-0.025-0.0250.0000.0000.0000.000
61A75LEU00.0150.0117.1360.0200.0200.0000.0000.0000.000
62A76LEU0-0.041-0.0224.587-0.162-0.060-0.001-0.006-0.0940.000
63A77LEU0-0.012-0.0154.249-0.377-0.115-0.001-0.040-0.2220.000
64A78GLY00.0300.0072.500-5.218-2.6941.151-1.636-2.039-0.015
65A79VAL0-0.027-0.0043.4721.2371.7070.0150.065-0.5500.000
66A80THR00.0020.0085.306-0.469-0.538-0.001-0.0160.0860.000
67A81GLU-1-0.800-0.8708.100-0.377-0.3770.0000.0000.0000.000
68A82ASP-1-0.930-0.97610.140-0.436-0.4360.0000.0000.0000.000
69A83LEU0-0.023-0.02011.8390.0290.0290.0000.0000.0000.000
70A84GLN00.007-0.00615.3370.0420.0420.0000.0000.0000.000
71A85TRP00.004-0.01913.923-0.005-0.0050.0000.0000.0000.000
72A86ASP-1-0.850-0.93119.696-0.270-0.2700.0000.0000.0000.000
73A87PHE0-0.022-0.01523.1020.0130.0130.0000.0000.0000.000
74A88VAL0-0.0180.00718.7080.0110.0110.0000.0000.0000.000
75A89SER0-0.009-0.01518.775-0.013-0.0130.0000.0000.0000.000
76A90GLY0-0.020-0.01215.6900.0270.0270.0000.0000.0000.000
77A91GLN0-0.034-0.0128.3850.0990.0990.0000.0000.0000.000
78A92ALA00.008-0.00710.1150.1130.1130.0000.0000.0000.000
79A93LEU00.0080.0227.582-0.359-0.3590.0000.0000.0000.000
80A94VAL00.0080.0136.4000.2750.2750.0000.0000.0000.000
81A95THR00.007-0.0077.178-0.194-0.1940.0000.0000.0000.000
82A96ARG10.9900.9999.5750.4810.4810.0000.0000.0000.000
83A97PHE00.0310.02011.9000.0460.0460.0000.0000.0000.000
84A98MET0-0.036-0.01114.2040.0390.0390.0000.0000.0000.000
85A99GLU-1-0.928-0.97117.966-0.263-0.2630.0000.0000.0000.000
86A100ASN0-0.0240.00221.1700.0240.0240.0000.0000.0000.000
87A101GLY00.0080.01521.7340.0180.0180.0000.0000.0000.000
88A102SER0-0.007-0.01721.547-0.008-0.0080.0000.0000.0000.000
89A103LEU00.0500.02123.2240.0150.0150.0000.0000.0000.000
90A104ALA00.0190.00225.8040.0140.0140.0000.0000.0000.000
91A105GLY0-0.0190.00426.8900.0100.0100.0000.0000.0000.000
92A106LEU00.016-0.00328.1500.0090.0090.0000.0000.0000.000
93A107LEU0-0.107-0.02430.2530.0120.0120.0000.0000.0000.000
94A108GLN00.0550.03531.1030.0070.0070.0000.0000.0000.000
95A109PRO00.011-0.00934.2220.0040.0040.0000.0000.0000.000
96A110GLU-1-0.941-0.96236.169-0.111-0.1110.0000.0000.0000.000
97A111ALA0-0.020-0.00733.366-0.003-0.0030.0000.0000.0000.000
98A112PRO0-0.0060.01433.7460.0060.0060.0000.0000.0000.000
99A113ARG10.8780.92033.4840.1020.1020.0000.0000.0000.000
100A114PRO00.0300.01633.1950.0060.0060.0000.0000.0000.000
101A115TRP00.0900.04134.148-0.006-0.0060.0000.0000.0000.000
102A116PRO00.0020.00034.134-0.001-0.0010.0000.0000.0000.000
103A117LEU00.0030.01327.594-0.002-0.0020.0000.0000.0000.000
104A118LEU00.0150.00229.751-0.007-0.0070.0000.0000.0000.000
105A119CYS0-0.033-0.00530.723-0.001-0.0010.0000.0000.0000.000
106A120ARG10.9080.96826.2080.1410.1410.0000.0000.0000.000
107A121LEU00.0060.01125.030-0.004-0.0040.0000.0000.0000.000
108A122LEU00.0090.00326.123-0.007-0.0070.0000.0000.0000.000
109A123GLN00.0120.01427.1630.0000.0000.0000.0000.0000.000
110A124GLU-1-0.801-0.88222.843-0.162-0.1620.0000.0000.0000.000
111A125VAL0-0.004-0.00322.801-0.011-0.0110.0000.0000.0000.000
112A126VAL00.0180.02023.690-0.002-0.0020.0000.0000.0000.000
113A127LEU0-0.0100.00422.9230.0040.0040.0000.0000.0000.000
114A128GLY00.0120.01319.7010.0050.0050.0000.0000.0000.000
115A129MET0-0.031-0.01420.057-0.011-0.0110.0000.0000.0000.000
116A130CYS0-0.067-0.02322.4790.0150.0150.0000.0000.0000.000
117A131TYR00.0200.02114.099-0.004-0.0040.0000.0000.0000.000
118A132LEU00.0230.01516.2610.0160.0160.0000.0000.0000.000
119A133HIS0-0.086-0.06318.9920.0280.0280.0000.0000.0000.000
120A134SER0-0.110-0.05620.2210.0190.0190.0000.0000.0000.000
121A135LEU0-0.057-0.00715.4410.0160.0160.0000.0000.0000.000
122A136ASP-1-0.930-0.94018.4470.0630.0630.0000.0000.0000.000
123A137PRO0-0.013-0.02117.4490.0190.0190.0000.0000.0000.000
124A138PRO0-0.002-0.01618.664-0.011-0.0110.0000.0000.0000.000
125A139LEU0-0.023-0.00114.8860.0030.0030.0000.0000.0000.000
126A140LEU0-0.046-0.01918.813-0.003-0.0030.0000.0000.0000.000
127A141HIS00.0270.01218.2330.0160.0160.0000.0000.0000.000
128A142ARG10.8590.90720.2850.1060.1060.0000.0000.0000.000
129A143ASP-1-0.814-0.89221.198-0.200-0.2000.0000.0000.0000.000
130A144LEU00.0260.02622.658-0.018-0.0180.0000.0000.0000.000
131A145LYS10.9400.95723.6270.2180.2180.0000.0000.0000.000
132A146PRO00.0780.03824.197-0.020-0.0200.0000.0000.0000.000
133A147SER00.003-0.00623.350-0.006-0.0060.0000.0000.0000.000
134A148ASN0-0.093-0.03820.012-0.039-0.0390.0000.0000.0000.000
135A149ILE0-0.020-0.00519.850-0.015-0.0150.0000.0000.0000.000
136A150LEU00.008-0.01116.0000.0080.0080.0000.0000.0000.000
137A151LEU00.0080.01019.8240.0190.0190.0000.0000.0000.000
138A152ASP-1-0.830-0.92417.927-0.268-0.2680.0000.0000.0000.000
139A153PRO0-0.010-0.01618.1470.0170.0170.0000.0000.0000.000
140A154GLU-1-0.931-0.96421.282-0.168-0.1680.0000.0000.0000.000
141A155LEU0-0.066-0.03222.9010.0200.0200.0000.0000.0000.000
142A156HIS10.8170.86820.6930.1870.1870.0000.0000.0000.000
143A157ALA00.0450.02120.940-0.024-0.0240.0000.0000.0000.000
144A158LYS10.8140.90814.7060.3220.3220.0000.0000.0000.000
145A159LEU0-0.009-0.00117.727-0.016-0.0160.0000.0000.0000.000
146A160ALA00.010-0.00615.301-0.057-0.0570.0000.0000.0000.000
147A161ASP-1-0.919-0.95815.082-0.336-0.3360.0000.0000.0000.000
148A162PHE00.0450.01313.0340.0470.0470.0000.0000.0000.000
149A163GLY00.0080.00115.3290.0100.0100.0000.0000.0000.000
150A164LEU0-0.044-0.02716.4580.0300.0300.0000.0000.0000.000
151A165SER0-0.0090.00416.3100.0170.0170.0000.0000.0000.000
152A166THR0-0.090-0.04217.7090.0080.0080.0000.0000.0000.000
153A167PHE00.0490.02013.5700.0010.0010.0000.0000.0000.000
154A168GLN0-0.025-0.02719.540-0.003-0.0030.0000.0000.0000.000
155A169GLY0-0.0010.00623.0540.0110.0110.0000.0000.0000.000
156A170GLY0-0.0220.00121.2350.0080.0080.0000.0000.0000.000
157A186GLY00.0560.01630.079-0.003-0.0030.0000.0000.0000.000
158A187THR0-0.080-0.05825.8800.0090.0090.0000.0000.0000.000
159A188LEU00.0630.03328.4810.0030.0030.0000.0000.0000.000
160A189ALA0-0.0030.01231.6300.0070.0070.0000.0000.0000.000
161A190TYR0-0.067-0.08828.4330.0070.0070.0000.0000.0000.000
162A191LEU0-0.0160.01328.209-0.002-0.0020.0000.0000.0000.000
163A192ASP-1-0.752-0.86630.345-0.063-0.0630.0000.0000.0000.000
164A193PRO00.0520.01632.3330.0020.0020.0000.0000.0000.000
165A194GLU-1-0.811-0.87334.844-0.045-0.0450.0000.0000.0000.000
166A195LEU0-0.061-0.03828.9410.0030.0030.0000.0000.0000.000
167A196LEU0-0.069-0.01533.296-0.002-0.0020.0000.0000.0000.000
168A197PHE00.001-0.02135.5140.0050.0050.0000.0000.0000.000
169A198LYS10.9130.95736.8230.0340.0340.0000.0000.0000.000
170A199VAL0-0.0090.02337.5780.0040.0040.0000.0000.0000.000
171A200ASN0-0.009-0.00232.6970.0050.0050.0000.0000.0000.000
172A201LEU00.0070.00433.376-0.003-0.0030.0000.0000.0000.000
173A202LYS10.8670.92824.7690.0570.0570.0000.0000.0000.000
174A203ALA00.0310.02225.8990.0010.0010.0000.0000.0000.000
175A204SER00.0500.01527.1830.0060.0060.0000.0000.0000.000
176A205LYS10.9990.98924.5130.0260.0260.0000.0000.0000.000
177A206ALA00.1050.05027.030-0.007-0.0070.0000.0000.0000.000
178A207SER0-0.069-0.03227.771-0.001-0.0010.0000.0000.0000.000
179A208ASP-1-0.747-0.87523.510-0.133-0.1330.0000.0000.0000.000
180A209VAL0-0.026-0.00326.795-0.007-0.0070.0000.0000.0000.000
181A210TYR00.0070.00329.7030.0020.0020.0000.0000.0000.000
182A211SER0-0.033-0.02527.3140.0000.0000.0000.0000.0000.000
183A212PHE00.0320.00227.706-0.004-0.0040.0000.0000.0000.000
184A213GLY00.0520.03129.4140.0010.0010.0000.0000.0000.000
185A214ILE0-0.066-0.02631.7240.0020.0020.0000.0000.0000.000
186A215LEU0-0.025-0.01226.358-0.002-0.0020.0000.0000.0000.000
187A216VAL0-0.018-0.00830.698-0.001-0.0010.0000.0000.0000.000
188A217TRP00.001-0.02732.9950.0010.0010.0000.0000.0000.000
189A218ALA00.0320.01331.9980.0020.0020.0000.0000.0000.000
190A219VAL0-0.024-0.01030.277-0.001-0.0010.0000.0000.0000.000
191A220LEU0-0.075-0.04333.2940.0040.0040.0000.0000.0000.000
192A221ALA0-0.029-0.02036.9400.0040.0040.0000.0000.0000.000
193A222GLY0-0.030-0.01135.6220.0020.0020.0000.0000.0000.000
194A223ARG10.8140.88635.0960.0860.0860.0000.0000.0000.000
195A224GLU-1-0.784-0.86329.477-0.156-0.1560.0000.0000.0000.000
196A225ALA0-0.024-0.01033.5320.0070.0070.0000.0000.0000.000
197A226GLU-1-0.979-0.99133.763-0.112-0.1120.0000.0000.0000.000
198A227LEU0-0.026-0.02334.8970.0070.0070.0000.0000.0000.000
199A228VAL0-0.042-0.02134.625-0.007-0.0070.0000.0000.0000.000
200A229ASP-1-0.963-0.97235.636-0.074-0.0740.0000.0000.0000.000
201A242GLN0-0.018-0.02241.6110.0000.0000.0000.0000.0000.000
202A243SER0-0.0020.00341.9420.0010.0010.0000.0000.0000.000
203A244ARG10.8280.92638.1620.0620.0620.0000.0000.0000.000
204A245PRO00.0240.01836.7660.0030.0030.0000.0000.0000.000
205A246PRO00.0100.02940.0200.0030.0030.0000.0000.0000.000
206A247LEU00.0700.02142.076-0.002-0.0020.0000.0000.0000.000
207A248THR0-0.045-0.03044.071-0.001-0.0010.0000.0000.0000.000
208A249GLU-1-0.801-0.86341.268-0.079-0.0790.0000.0000.0000.000
209A250LEU0-0.033-0.00339.316-0.003-0.0030.0000.0000.0000.000
210A251PRO00.0400.02241.2370.0040.0040.0000.0000.0000.000
211A252PRO0-0.007-0.00344.1820.0000.0000.0000.0000.0000.000
212A253GLY00.0260.01144.6610.0020.0020.0000.0000.0000.000
213A254SER0-0.002-0.00245.2050.0030.0030.0000.0000.0000.000
214A255PRO00.032-0.00245.142-0.001-0.0010.0000.0000.0000.000
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