FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-04-23

All entries: 37539

Number of unique PDB entries: 7791

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FMODB ID: 2JQ7R

Calculation Name: 4F15-G-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 4F15

Chain ID: G

ChEMBL ID:

UniProt ID: C5MQE6

Base Structure: X-ray

Registration Date: 2023-09-19

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 225
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 22 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2769166.47675
FMO2-HF: Nuclear repulsion 2679885.288309
FMO2-HF: Total energy -89281.188441
FMO2-MP2: Total energy -89542.884604


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(G:43:LYS)


Summations of interaction energy for fragment #1(G:43:LYS)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
6.6918.382-0.031-0.731-0.93-0.001
Interaction energy analysis for fragmet #1(G:43:LYS)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.992 / q_NPA : 0.970
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3G45ARG11.0011.0063.80427.03228.723-0.031-0.731-0.930-0.001
4G46GLY0-0.010-0.0126.667-0.151-0.1510.0000.0000.0000.000
5G47VAL00.0540.0268.672-0.450-0.4500.0000.0000.0000.000
6G48ALA00.0050.00410.3241.0551.0550.0000.0000.0000.000
7G49PRO0-0.061-0.02213.2340.1740.1740.0000.0000.0000.000
8G50LEU00.0160.01716.787-0.323-0.3230.0000.0000.0000.000
9G51HIS00.0670.03412.5420.2040.2040.0000.0000.0000.000
10G52LEU0-0.037-0.01817.6670.7990.7990.0000.0000.0000.000
11G53GLY0-0.049-0.02919.962-0.315-0.3150.0000.0000.0000.000
12G54LYN00.0310.05621.007-0.325-0.3250.0000.0000.0000.000
13G55CYS0-0.068-0.02923.560-0.333-0.3330.0000.0000.0000.000
14G56ASN00.0880.05921.618-0.381-0.3810.0000.0000.0000.000
15G57ILE00.024-0.00420.5670.6660.6660.0000.0000.0000.000
16G58ALA0-0.022-0.00124.0350.5410.5410.0000.0000.0000.000
17G59GLY00.0650.02126.7060.4930.4930.0000.0000.0000.000
18G60TRP0-0.017-0.02725.3310.3430.3430.0000.0000.0000.000
19G61ILE0-0.033-0.00727.3310.3410.3410.0000.0000.0000.000
20G62LEU0-0.019-0.01529.2660.4440.4440.0000.0000.0000.000
21G63GLY0-0.041-0.01531.0600.3950.3950.0000.0000.0000.000
22G64ASN00.0610.00829.4530.6480.6480.0000.0000.0000.000
23G65PRO00.0310.00930.887-0.227-0.2270.0000.0000.0000.000
24G66GLU-1-0.958-0.96628.045-11.004-11.0040.0000.0000.0000.000
25G68GLU-1-1.018-1.00828.565-9.523-9.5230.0000.0000.0000.000
26G69SER00.006-0.01522.678-0.206-0.2060.0000.0000.0000.000
27G70LEU0-0.0190.00020.1450.3900.3900.0000.0000.0000.000
28G71SER0-0.052-0.02323.854-0.056-0.0560.0000.0000.0000.000
29G72THR00.007-0.01225.794-0.056-0.0560.0000.0000.0000.000
30G73ALA00.0410.02628.3730.2360.2360.0000.0000.0000.000
31G74SER0-0.068-0.02724.515-0.097-0.0970.0000.0000.0000.000
32G75SER0-0.073-0.09724.8710.2850.2850.0000.0000.0000.000
33G76TRP0-0.056-0.03819.541-0.038-0.0380.0000.0000.0000.000
34G77SER0-0.0010.00615.4520.1830.1830.0000.0000.0000.000
35G78TYR0-0.035-0.04810.8360.0430.0430.0000.0000.0000.000
36G79ILE00.0090.01117.002-0.226-0.2260.0000.0000.0000.000
37G80VAL00.002-0.00212.885-1.371-1.3710.0000.0000.0000.000
38G81GLU-1-0.814-0.87815.923-13.806-13.8060.0000.0000.0000.000
39G82THR00.0090.00516.754-0.964-0.9640.0000.0000.0000.000
40G83SER00.055-0.01617.6770.2810.2810.0000.0000.0000.000
41G84SER0-0.0190.01019.5760.4880.4880.0000.0000.0000.000
42G85SER0-0.013-0.00622.6420.4780.4780.0000.0000.0000.000
43G86ASP-1-0.888-0.93522.609-13.583-13.5830.0000.0000.0000.000
44G87ASN0-0.047-0.03925.4730.3010.3010.0000.0000.0000.000
45G88GLY00.0130.00626.5710.3520.3520.0000.0000.0000.000
46G89THR0-0.039-0.01427.5340.0320.0320.0000.0000.0000.000
47G90CYS0-0.100-0.00431.020-0.111-0.1110.0000.0000.0000.000
48G91TYR00.0350.00233.1950.1080.1080.0000.0000.0000.000
49G92PRO00.0150.01034.557-0.149-0.1490.0000.0000.0000.000
50G93GLY0-0.024-0.03034.3440.3410.3410.0000.0000.0000.000
51G94ASP-1-0.850-0.89732.189-10.143-10.1430.0000.0000.0000.000
52G95PHE0-0.035-0.03029.4500.2820.2820.0000.0000.0000.000
53G96ILE0-0.057-0.03230.961-0.122-0.1220.0000.0000.0000.000
54G97ASP-1-0.817-0.92230.195-9.548-9.5480.0000.0000.0000.000
55G98TYR0-0.0280.00422.594-0.003-0.0030.0000.0000.0000.000
56G99GLU-1-0.884-0.96421.575-14.431-14.4310.0000.0000.0000.000
57G100GLU-1-0.893-0.93624.002-10.303-10.3030.0000.0000.0000.000
58G101LEU0-0.054-0.03126.387-0.008-0.0080.0000.0000.0000.000
59G102ARG10.9170.91517.80715.57915.5790.0000.0000.0000.000
60G103GLU-1-0.912-0.95320.098-14.501-14.5010.0000.0000.0000.000
61G104GLN0-0.0070.02822.082-0.178-0.1780.0000.0000.0000.000
62G105LEU0-0.065-0.02223.3750.2570.2570.0000.0000.0000.000
63G106SER0-0.025-0.02119.081-0.423-0.4230.0000.0000.0000.000
64G107SER0-0.011-0.02520.611-0.078-0.0780.0000.0000.0000.000
65G108VAL0-0.0200.00422.0740.3310.3310.0000.0000.0000.000
66G109SER00.0850.04924.394-0.190-0.1900.0000.0000.0000.000
67G110SER0-0.0450.00626.9620.2320.2320.0000.0000.0000.000
68G111PHE00.0160.01327.790-0.012-0.0120.0000.0000.0000.000
69G112GLU-1-0.910-0.95829.943-8.262-8.2620.0000.0000.0000.000
70G113ARG10.9370.98433.2809.0449.0440.0000.0000.0000.000
71G114PHE00.0210.01434.8570.1780.1780.0000.0000.0000.000
72G115GLU-1-0.973-1.01938.449-7.298-7.2980.0000.0000.0000.000
73G116ILE0-0.0510.00140.3570.1770.1770.0000.0000.0000.000
74G117PHE0-0.050-0.03242.2640.2280.2280.0000.0000.0000.000
75G118PRO00.0610.01943.881-0.132-0.1320.0000.0000.0000.000
76G119LYS10.8670.92444.6396.8276.8270.0000.0000.0000.000
77G120THR00.0090.01646.9000.1240.1240.0000.0000.0000.000
78G121SER00.0270.00350.0350.0140.0140.0000.0000.0000.000
79G122SER00.0130.00447.7090.0670.0670.0000.0000.0000.000
80G123TRP0-0.003-0.02146.0460.0700.0700.0000.0000.0000.000
81G124PRO00.0230.01252.3010.0200.0200.0000.0000.0000.000
82G125ASN0-0.065-0.04755.7490.0140.0140.0000.0000.0000.000
83G126HIS00.0220.01752.2350.0990.0990.0000.0000.0000.000
84G127ASP-1-0.905-0.94752.131-6.053-6.0530.0000.0000.0000.000
85G128SER00.0120.00849.461-0.131-0.1310.0000.0000.0000.000
86G129ASN0-0.028-0.03446.932-0.197-0.1970.0000.0000.0000.000
87G130LYS11.0371.01448.3126.3336.3330.0000.0000.0000.000
88G131GLY0-0.012-0.00244.445-0.044-0.0440.0000.0000.0000.000
89G132VAL0-0.061-0.00542.453-0.162-0.1620.0000.0000.0000.000
90G133THR00.021-0.01939.5750.1310.1310.0000.0000.0000.000
91G134ALA00.046-0.01540.405-0.092-0.0920.0000.0000.0000.000
92G135ALA0-0.0030.00937.352-0.134-0.1340.0000.0000.0000.000
93G137PRO00.0630.03835.4210.2210.2210.0000.0000.0000.000
94G138HIS00.0550.00734.862-0.227-0.2270.0000.0000.0000.000
95G139ALA00.0210.02336.5440.1150.1150.0000.0000.0000.000
96G140GLY0-0.018-0.00638.1530.1540.1540.0000.0000.0000.000
97G141ALA0-0.030-0.02141.274-0.058-0.0580.0000.0000.0000.000
98G142LYS10.8910.96940.9636.9596.9590.0000.0000.0000.000
99G143SER00.0680.04938.3650.2730.2730.0000.0000.0000.000
100G144PHE00.0280.00738.8470.0800.0800.0000.0000.0000.000
101G145TYR0-0.013-0.04132.698-0.218-0.2180.0000.0000.0000.000
102G146LYS10.8880.95034.7758.6778.6770.0000.0000.0000.000
103G147ASN0-0.026-0.02832.8050.3590.3590.0000.0000.0000.000
104G148LEU00.0310.03335.9410.1420.1420.0000.0000.0000.000
105G149ILE0-0.050-0.01739.3330.0200.0200.0000.0000.0000.000
106G150TRP00.001-0.00141.822-0.038-0.0380.0000.0000.0000.000
107G151LEU0-0.0330.00044.0520.1130.1130.0000.0000.0000.000
108G152VAL0-0.028-0.01447.470-0.033-0.0330.0000.0000.0000.000
109G153LYN00.0120.03050.4040.1150.1150.0000.0000.0000.000
110G154LYS10.9240.98854.1695.4385.4380.0000.0000.0000.000
111G155GLY0-0.040-0.00956.3070.0870.0870.0000.0000.0000.000
112G156ASN00.015-0.03258.5560.0510.0510.0000.0000.0000.000
113G157SER0-0.012-0.02158.7030.1100.1100.0000.0000.0000.000
114G158TYR0-0.0200.01648.732-0.068-0.0680.0000.0000.0000.000
115G159PRO0-0.012-0.00155.580-0.025-0.0250.0000.0000.0000.000
116G160LYS10.9890.99554.4365.5485.5480.0000.0000.0000.000
117G161LEU0-0.0170.00648.6330.0530.0530.0000.0000.0000.000
118G162SER00.0800.02451.094-0.075-0.0750.0000.0000.0000.000
119G163LYS10.8430.93947.6896.3336.3330.0000.0000.0000.000
120G164SER0-0.014-0.01747.458-0.094-0.0940.0000.0000.0000.000
121G165TYR00.0310.02741.0190.0190.0190.0000.0000.0000.000
122G166ILE0-0.016-0.01444.869-0.072-0.0720.0000.0000.0000.000
123G167ASN0-0.024-0.00139.0480.0490.0490.0000.0000.0000.000
124G168ASP-1-0.891-0.95943.306-6.661-6.6610.0000.0000.0000.000
125G169LYS10.8300.92737.9387.8227.8220.0000.0000.0000.000
126G170GLY00.0500.02639.3940.1040.1040.0000.0000.0000.000
127G171LYS10.8280.90732.1498.9688.9680.0000.0000.0000.000
128G172GLU-1-0.797-0.90831.163-9.576-9.5760.0000.0000.0000.000
129G173VAL0-0.059-0.04134.059-0.175-0.1750.0000.0000.0000.000
130G174LEU0-0.0110.02330.3260.0820.0820.0000.0000.0000.000
131G175VAL0-0.056-0.04934.1810.0970.0970.0000.0000.0000.000
132G176LEU00.0510.01831.029-0.062-0.0620.0000.0000.0000.000
133G177TRP0-0.053-0.01935.6360.1530.1530.0000.0000.0000.000
134G178GLY00.0690.04137.904-0.197-0.1970.0000.0000.0000.000
135G179ILE0-0.023-0.02339.1370.2240.2240.0000.0000.0000.000
136G180HIS00.014-0.00741.126-0.019-0.0190.0000.0000.0000.000
137G181HIS0-0.068-0.04040.0780.2360.2360.0000.0000.0000.000
138G182PRO0-0.011-0.00343.979-0.125-0.1250.0000.0000.0000.000
139G183SER00.0720.03346.345-0.107-0.1070.0000.0000.0000.000
140G184THR00.014-0.01347.2440.1020.1020.0000.0000.0000.000
141G185SER00.0450.01450.9980.0080.0080.0000.0000.0000.000
142G186ALA00.0480.04053.0860.0300.0300.0000.0000.0000.000
143G187ASP-1-0.803-0.88850.229-6.365-6.3650.0000.0000.0000.000
144G188GLN00.027-0.00949.816-0.210-0.2100.0000.0000.0000.000
145G189GLN0-0.048-0.01151.3930.0390.0390.0000.0000.0000.000
146G190SER0-0.038-0.06553.9870.0540.0540.0000.0000.0000.000
147G191LEU0-0.071-0.02148.135-0.017-0.0170.0000.0000.0000.000
148G192TYR0-0.022-0.07045.9210.0100.0100.0000.0000.0000.000
149G193GLN00.0260.05052.305-0.040-0.0400.0000.0000.0000.000
150G194ASN0-0.064-0.03354.7740.2220.2220.0000.0000.0000.000
151G195ALA00.011-0.00254.470-0.117-0.1170.0000.0000.0000.000
152G196ASP-1-0.947-0.95854.480-5.722-5.7220.0000.0000.0000.000
153G197ALA00.0340.01650.9670.0280.0280.0000.0000.0000.000
154G198TYR0-0.070-0.04749.173-0.029-0.0290.0000.0000.0000.000
155G199VAL00.009-0.01345.4080.0450.0450.0000.0000.0000.000
156G200PHE0-0.042-0.02846.4190.0310.0310.0000.0000.0000.000
157G201VAL00.0550.02841.427-0.095-0.0950.0000.0000.0000.000
158G202GLY0-0.033-0.01143.7630.1680.1680.0000.0000.0000.000
159G203SER0-0.051-0.01942.552-0.245-0.2450.0000.0000.0000.000
160G204SER00.0060.00642.7930.1530.1530.0000.0000.0000.000
161G205ARG10.9140.94438.1567.5237.5230.0000.0000.0000.000
162G206TYR00.0900.03936.832-0.058-0.0580.0000.0000.0000.000
163G207SER00.0280.02141.0720.1880.1880.0000.0000.0000.000
164G208LYS10.9450.98937.3218.2838.2830.0000.0000.0000.000
165G209LYS10.9190.94943.5306.7266.7260.0000.0000.0000.000
166G210PHE00.0120.01440.859-0.084-0.0840.0000.0000.0000.000
167G211LYS10.9290.94846.0286.5636.5630.0000.0000.0000.000
168G212PRO0-0.0080.03745.407-0.039-0.0390.0000.0000.0000.000
169G213GLU-1-0.840-0.93145.831-6.674-6.6740.0000.0000.0000.000
170G214ILE0-0.0600.00445.992-0.197-0.1970.0000.0000.0000.000
171G215ALA00.0020.00145.3650.1010.1010.0000.0000.0000.000
172G216ILE00.0060.00945.419-0.115-0.1150.0000.0000.0000.000
173G217ARG10.7910.89640.6567.3747.3740.0000.0000.0000.000
174G218PRO00.0740.02738.2280.0460.0460.0000.0000.0000.000
175G219LYS10.9510.99339.3867.1227.1220.0000.0000.0000.000
176G220VAL0-0.0140.00133.509-0.096-0.0960.0000.0000.0000.000
177G221ARG10.8500.93130.42210.04510.0450.0000.0000.0000.000
178G222ASP-1-0.935-0.99737.053-7.324-7.3240.0000.0000.0000.000
179G223GLN00.0290.01138.9830.2250.2250.0000.0000.0000.000
180G224GLU-1-0.875-0.95240.541-7.218-7.2180.0000.0000.0000.000
181G225GLY00.0160.03742.8660.0810.0810.0000.0000.0000.000
182G226ARG10.8410.91036.6118.2848.2840.0000.0000.0000.000
183G227MET0-0.0320.00837.8210.3220.3220.0000.0000.0000.000
184G228ASN00.0340.04135.935-0.363-0.3630.0000.0000.0000.000
185G229TYR00.0430.04133.5580.3190.3190.0000.0000.0000.000
186G230TYR0-0.022-0.02434.503-0.207-0.2070.0000.0000.0000.000
187G231TRP00.0170.01929.1520.3030.3030.0000.0000.0000.000
188G232THR00.031-0.00933.9990.0650.0650.0000.0000.0000.000
189G233LEU00.0200.01131.0470.0020.0020.0000.0000.0000.000
190G234VAL0-0.058-0.02335.3530.2060.2060.0000.0000.0000.000
191G235GLU-1-0.836-0.93335.729-8.667-8.6670.0000.0000.0000.000
192G236PRO0-0.010-0.02637.9210.2150.2150.0000.0000.0000.000
193G237GLY00.0060.03040.8310.1250.1250.0000.0000.0000.000
194G238ASP-1-0.844-0.91842.322-6.929-6.9290.0000.0000.0000.000
195G239LYS10.9750.97444.0216.3966.3960.0000.0000.0000.000
196G240ILE0-0.0190.01240.5210.0500.0500.0000.0000.0000.000
197G241THR0-0.049-0.03944.0230.0290.0290.0000.0000.0000.000
198G242PHE00.0390.00841.131-0.146-0.1460.0000.0000.0000.000
199G243GLU-1-0.905-0.96247.125-5.923-5.9230.0000.0000.0000.000
200G244ALA0-0.031-0.00848.336-0.125-0.1250.0000.0000.0000.000
201G245THR0-0.051-0.01150.4150.0650.0650.0000.0000.0000.000
202G246GLY00.0810.03950.6570.0950.0950.0000.0000.0000.000
203G247ASN00.001-0.02446.0350.0350.0350.0000.0000.0000.000
204G248LEU00.0330.03443.497-0.193-0.1930.0000.0000.0000.000
205G249VAL0-0.038-0.00840.1590.0770.0770.0000.0000.0000.000
206G250VAL0-0.013-0.00842.106-0.088-0.0880.0000.0000.0000.000
207G251PRO00.0670.02939.959-0.146-0.1460.0000.0000.0000.000
208G252ARG10.9310.98340.0207.6887.6880.0000.0000.0000.000
209G253TYR0-0.042-0.03836.5320.0480.0480.0000.0000.0000.000
210G254ALA0-0.016-0.00136.402-0.093-0.0930.0000.0000.0000.000
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