FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-04-23

All entries: 37539

Number of unique PDB entries: 7791

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FMODB ID: 2LNNR

Calculation Name: 1UEB-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1UEB

Chain ID: A

ChEMBL ID:

UniProt ID: Q76G20

Base Structure: X-ray

Registration Date: 2023-09-27

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 184
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -1705955.819451
FMO2-HF: Nuclear repulsion 1634598.45368
FMO2-HF: Total energy -71357.365771
FMO2-MP2: Total energy -71564.043869


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:MET)


Summations of interaction energy for fragment #1(A:1:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-23.162-20.01818.493-7.778-13.86-0.069
Interaction energy analysis for fragmet #1(A:1:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.027 / q_NPA : -0.010
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3SER0-0.053-0.0273.801-0.2752.623-0.022-1.552-1.3230.008
4A4VAL00.0680.0296.237-0.198-0.1980.0000.0000.0000.000
5A5THR0-0.004-0.0158.6140.0740.0740.0000.0000.0000.000
6A6ASP-1-0.933-0.9618.325-1.586-1.5860.0000.0000.0000.000
7A7LEU0-0.0380.0038.532-0.071-0.0710.0000.0000.0000.000
8A8ARG10.8390.90210.7961.0081.0080.0000.0000.0000.000
9A9PRO00.010-0.00313.566-0.058-0.0580.0000.0000.0000.000
10A10GLY00.0380.02815.128-0.023-0.0230.0000.0000.0000.000
11A11THR0-0.053-0.0358.591-0.099-0.0990.0000.0000.0000.000
12A12LYS10.9610.99110.1180.8260.8260.0000.0000.0000.000
13A13VAL00.0110.0036.438-0.447-0.4470.0000.0000.0000.000
14A14LYS10.9921.0167.043-1.239-1.2390.0000.0000.0000.000
15A15MET0-0.074-0.0266.6700.2110.2110.0000.0000.0000.000
16A16ASP-1-0.904-0.9528.6360.2900.2900.0000.0000.0000.000
17A17GLY0-0.033-0.01810.012-0.056-0.0560.0000.0000.0000.000
18A18GLY0-0.0100.00811.750-0.043-0.0430.0000.0000.0000.000
19A19LEU00.0430.02611.2840.0620.0620.0000.0000.0000.000
20A20TRP0-0.037-0.03311.218-0.064-0.0640.0000.0000.0000.000
21A21GLU-1-0.860-0.93911.933-0.538-0.5380.0000.0000.0000.000
22A22CYS0-0.065-0.01412.1910.0850.0850.0000.0000.0000.000
23A23VAL0-0.021-0.02314.026-0.013-0.0130.0000.0000.0000.000
24A24GLU-1-0.925-0.96417.052-0.203-0.2030.0000.0000.0000.000
25A25TYR00.012-0.00713.169-0.029-0.0290.0000.0000.0000.000
26A26GLN0-0.0030.01116.7890.0320.0320.0000.0000.0000.000
27A27HIS00.0230.02916.0940.0220.0220.0000.0000.0000.000
28A28GLN00.0230.00117.4930.0300.0300.0000.0000.0000.000
29A29LYS10.9310.96619.1530.1360.1360.0000.0000.0000.000
30A30LEU00.0280.03121.4370.0010.0010.0000.0000.0000.000
31A31GLY00.0090.00424.8120.0140.0140.0000.0000.0000.000
32A32ARG10.9690.96224.8500.0460.0460.0000.0000.0000.000
33A33GLY0-0.0140.01422.9640.0100.0100.0000.0000.0000.000
34A34GLY00.016-0.00618.577-0.015-0.0150.0000.0000.0000.000
35A35ALA0-0.022-0.02016.4500.0020.0020.0000.0000.0000.000
36A36LYS10.9210.96315.1800.0830.0830.0000.0000.0000.000
37A37VAL00.0210.01612.283-0.023-0.0230.0000.0000.0000.000
38A38VAL00.0010.01214.2290.0370.0370.0000.0000.0000.000
39A39ALA00.000-0.00813.229-0.045-0.0450.0000.0000.0000.000
40A40LYS11.0171.02415.3590.2040.2040.0000.0000.0000.000
41A41PHE00.012-0.00910.580-0.059-0.0590.0000.0000.0000.000
42A42LYS10.9330.97515.9150.3400.3400.0000.0000.0000.000
43A43ASN00.001-0.00216.153-0.036-0.0360.0000.0000.0000.000
44A44LEU00.0200.00813.532-0.025-0.0250.0000.0000.0000.000
45A45GLU-1-0.828-0.89317.1980.1080.1080.0000.0000.0000.000
46A46THR0-0.028-0.01919.389-0.003-0.0030.0000.0000.0000.000
47A47GLY00.0180.00121.592-0.022-0.0220.0000.0000.0000.000
48A48ALA0-0.034-0.00719.309-0.009-0.0090.0000.0000.0000.000
49A49THR0-0.023-0.02018.721-0.026-0.0260.0000.0000.0000.000
50A50VAL0-0.0020.00014.2360.0290.0290.0000.0000.0000.000
51A51GLU-1-0.928-0.95916.460-0.176-0.1760.0000.0000.0000.000
52A52ARG10.9090.9468.512-0.076-0.0760.0000.0000.0000.000
53A53THR00.001-0.00614.502-0.050-0.0500.0000.0000.0000.000
54A54PHE00.0130.0138.8630.0290.0290.0000.0000.0000.000
55A55ASN0-0.056-0.04911.486-0.054-0.0540.0000.0000.0000.000
56A56SER0-0.039-0.04110.788-0.012-0.0120.0000.0000.0000.000
57A57GLY00.0140.00710.234-0.092-0.0920.0000.0000.0000.000
58A58GLU-1-0.864-0.9186.9540.1650.1650.0000.0000.0000.000
59A59LYS10.9370.9612.487-1.746-0.4581.154-0.616-1.8270.004
60A60LEU0-0.009-0.0033.274-1.1240.0710.210-0.303-1.102-0.002
61A61GLU-1-0.869-0.9472.408-0.6311.7447.288-4.449-5.215-0.023
62A62ASP-1-0.891-0.9351.891-17.685-22.5309.864-0.843-4.176-0.056
63A63ILE0-0.008-0.0044.5040.2800.513-0.001-0.015-0.2170.000
64A64TYR0-0.013-0.0117.129-0.288-0.2880.0000.0000.0000.000
65A65VAL0-0.023-0.0279.7090.2030.2030.0000.0000.0000.000
66A66GLU-1-0.904-0.93713.235-0.400-0.4000.0000.0000.0000.000
67A67THR0-0.027-0.00816.2690.0360.0360.0000.0000.0000.000
68A68ARG10.8260.91318.5930.1590.1590.0000.0000.0000.000
69A69GLU-1-0.920-0.96122.665-0.143-0.1430.0000.0000.0000.000
70A70LEU0-0.010-0.00224.3370.0100.0100.0000.0000.0000.000
71A71GLN0-0.014-0.00927.9680.0020.0020.0000.0000.0000.000
72A72TYR0-0.045-0.03331.7200.0070.0070.0000.0000.0000.000
73A73LEU0-0.018-0.01333.247-0.001-0.0010.0000.0000.0000.000
74A74TYR00.0370.01635.347-0.001-0.0010.0000.0000.0000.000
75A75PRO0-0.067-0.02235.4270.0010.0010.0000.0000.0000.000
76A76GLU-1-0.890-0.95734.9480.0230.0230.0000.0000.0000.000
77A77GLY0-0.0020.00735.3590.0050.0050.0000.0000.0000.000
78A78GLU-1-0.943-0.97833.6070.0220.0220.0000.0000.0000.000
79A79GLU-1-0.978-0.99230.1620.0450.0450.0000.0000.0000.000
80A80MET0-0.080-0.03831.031-0.004-0.0040.0000.0000.0000.000
81A81VAL00.0380.03330.5060.0000.0000.0000.0000.0000.000
82A82PHE0-0.001-0.01228.317-0.008-0.0080.0000.0000.0000.000
83A83MET00.0020.01529.8580.0070.0070.0000.0000.0000.000
84A84ASP-1-0.788-0.88724.055-0.143-0.1430.0000.0000.0000.000
85A85LEU0-0.044-0.03527.4580.0070.0070.0000.0000.0000.000
86A86GLU-1-0.954-0.95924.499-0.170-0.1700.0000.0000.0000.000
87A87THR0-0.097-0.08823.0900.0060.0060.0000.0000.0000.000
88A88TYR0-0.058-0.03126.5190.0140.0140.0000.0000.0000.000
89A89GLU-1-0.868-0.90623.326-0.056-0.0560.0000.0000.0000.000
90A90GLN0-0.011-0.01227.576-0.011-0.0110.0000.0000.0000.000
91A91PHE0-0.005-0.01122.8450.0090.0090.0000.0000.0000.000
92A92ALA00.0130.02527.482-0.008-0.0080.0000.0000.0000.000
93A93VAL00.003-0.01325.5120.0090.0090.0000.0000.0000.000
94A94PRO00.0530.03025.925-0.003-0.0030.0000.0000.0000.000
95A95ARG11.0381.00028.248-0.004-0.0040.0000.0000.0000.000
96A96SER0-0.049-0.01727.992-0.009-0.0090.0000.0000.0000.000
97A97ARG10.7860.88420.341-0.065-0.0650.0000.0000.0000.000
98A98VAL0-0.0070.00025.449-0.019-0.0190.0000.0000.0000.000
99A99VAL0-0.052-0.02826.3740.0050.0050.0000.0000.0000.000
100A100GLY00.0690.02329.101-0.003-0.0030.0000.0000.0000.000
101A101ALA00.0130.00531.992-0.001-0.0010.0000.0000.0000.000
102A102GLU-1-0.951-0.97533.429-0.025-0.0250.0000.0000.0000.000
103A103PHE0-0.0140.00435.8060.0000.0000.0000.0000.0000.000
104A104PHE00.020-0.01030.051-0.006-0.0060.0000.0000.0000.000
105A105LYS10.9040.92336.0940.0540.0540.0000.0000.0000.000
106A106GLU-1-0.930-0.97437.285-0.028-0.0280.0000.0000.0000.000
107A107GLY0-0.011-0.01036.770-0.001-0.0010.0000.0000.0000.000
108A108MET0-0.0320.04434.274-0.005-0.0050.0000.0000.0000.000
109A109THR00.0150.01530.0230.0040.0040.0000.0000.0000.000
110A110ALA0-0.067-0.03328.362-0.001-0.0010.0000.0000.0000.000
111A111LEU00.0090.00823.815-0.006-0.0060.0000.0000.0000.000
112A112GLY00.0160.01022.8830.0130.0130.0000.0000.0000.000
113A113ASP-1-0.912-0.95617.766-0.264-0.2640.0000.0000.0000.000
114A114MET0-0.012-0.01117.4740.0540.0540.0000.0000.0000.000
115A115TYR00.003-0.0109.748-0.047-0.0470.0000.0000.0000.000
116A116GLU-1-0.954-0.98812.6560.4860.4860.0000.0000.0000.000
117A117GLY0-0.019-0.01114.7410.0310.0310.0000.0000.0000.000
118A118GLN00.0130.01217.876-0.008-0.0080.0000.0000.0000.000
119A119PRO00.0370.02018.732-0.017-0.0170.0000.0000.0000.000
120A120ILE0-0.061-0.02415.8070.0320.0320.0000.0000.0000.000
121A121LYS10.8900.94319.9640.0900.0900.0000.0000.0000.000
122A122VAL00.0320.03622.331-0.021-0.0210.0000.0000.0000.000
123A123THR0-0.041-0.02824.1430.0150.0150.0000.0000.0000.000
124A124PRO00.0150.03126.753-0.012-0.0120.0000.0000.0000.000
125A125PRO00.0270.00829.668-0.009-0.0090.0000.0000.0000.000
126A126THR0-0.013-0.01131.0980.0050.0050.0000.0000.0000.000
127A127VAL00.0020.01432.4920.0080.0080.0000.0000.0000.000
128A128VAL0-0.0100.01434.979-0.005-0.0050.0000.0000.0000.000
129A129GLU-1-0.933-0.98537.542-0.068-0.0680.0000.0000.0000.000
130A130LEU0-0.0080.00639.3740.0020.0020.0000.0000.0000.000
131A131LYS10.9050.95443.0100.0390.0390.0000.0000.0000.000
132A132VAL00.0120.01946.6140.0020.0020.0000.0000.0000.000
133A133VAL0-0.049-0.03148.2850.0000.0000.0000.0000.0000.000
134A134ASP-1-0.937-0.96350.768-0.015-0.0150.0000.0000.0000.000
135A135THR00.019-0.00251.616-0.001-0.0010.0000.0000.0000.000
136A136PRO0-0.0210.00553.8390.0010.0010.0000.0000.0000.000
137A137PRO00.0160.01057.027-0.001-0.0010.0000.0000.0000.000
138A138GLY00.0120.01259.1000.0010.0010.0000.0000.0000.000
139A139VAL0-0.023-0.02158.560-0.001-0.0010.0000.0000.0000.000
140A140ARG10.9000.96059.4220.0170.0170.0000.0000.0000.000
141A141GLY00.0540.02256.3450.0000.0000.0000.0000.0000.000
142A142ASP-1-0.862-0.93953.435-0.018-0.0180.0000.0000.0000.000
143A143THR0-0.027-0.00154.5590.0010.0010.0000.0000.0000.000
144A144VAL0-0.007-0.01857.419-0.001-0.0010.0000.0000.0000.000
145A145SER0-0.021-0.02658.9850.0000.0000.0000.0000.0000.000
146A146GLY0-0.0010.02555.063-0.001-0.0010.0000.0000.0000.000
147A147GLY00.0200.00053.9360.0000.0000.0000.0000.0000.000
148A148SER0-0.070-0.03550.417-0.002-0.0020.0000.0000.0000.000
149A149LYS10.8130.90551.8660.0300.0300.0000.0000.0000.000
150A150PRO00.0110.02349.673-0.002-0.0020.0000.0000.0000.000
151A151ALA0-0.017-0.00648.4730.0010.0010.0000.0000.0000.000
152A152THR00.0350.02547.265-0.001-0.0010.0000.0000.0000.000
153A153LEU0-0.005-0.01542.358-0.002-0.0020.0000.0000.0000.000
154A154GLU-1-0.865-0.95343.246-0.039-0.0390.0000.0000.0000.000
155A155THR0-0.015-0.01539.6690.0020.0020.0000.0000.0000.000
156A156GLY0-0.028-0.00742.1670.0030.0030.0000.0000.0000.000
157A157ALA00.0070.01840.7390.0020.0020.0000.0000.0000.000
158A158VAL0-0.015-0.01042.807-0.001-0.0010.0000.0000.0000.000
159A159VAL00.0180.01742.138-0.001-0.0010.0000.0000.0000.000
160A160GLN0-0.018-0.01745.0720.0030.0030.0000.0000.0000.000
161A161VAL0-0.004-0.00346.692-0.004-0.0040.0000.0000.0000.000
162A162PRO00.006-0.00248.6760.0030.0030.0000.0000.0000.000
163A163LEU00.010-0.00651.8720.0010.0010.0000.0000.0000.000
164A164PHE0-0.046-0.03051.5200.0010.0010.0000.0000.0000.000
165A165VAL0-0.0090.01750.002-0.001-0.0010.0000.0000.0000.000
166A166GLU-1-0.835-0.92453.239-0.025-0.0250.0000.0000.0000.000
167A167PRO0-0.007-0.01253.145-0.002-0.0020.0000.0000.0000.000
168A168GLY0-0.030-0.01552.0930.0000.0000.0000.0000.0000.000
169A169GLU-1-0.907-0.95650.575-0.043-0.0430.0000.0000.0000.000
170A170VAL0-0.005-0.00445.0580.0010.0010.0000.0000.0000.000
171A171ILE0-0.030-0.01744.034-0.002-0.0020.0000.0000.0000.000
172A172LYS10.8950.93941.0670.0700.0700.0000.0000.0000.000
173A173VAL00.0160.00138.2930.0030.0030.0000.0000.0000.000
174A174ASP-1-0.824-0.90634.815-0.092-0.0920.0000.0000.0000.000
175A175THR0-0.018-0.04132.6180.0050.0050.0000.0000.0000.000
176A176ARG10.8610.93226.4380.1280.1280.0000.0000.0000.000
177A177THR0-0.025-0.02632.5390.0040.0040.0000.0000.0000.000
178A178GLY00.0260.01835.6850.0060.0060.0000.0000.0000.000
179A179GLU-1-0.951-0.97037.848-0.043-0.0430.0000.0000.0000.000
180A180TYR00.0260.00840.509-0.005-0.0050.0000.0000.0000.000
181A181VAL00.000-0.00639.379-0.001-0.0010.0000.0000.0000.000
182A182GLY0-0.015-0.01842.744-0.002-0.0020.0000.0000.0000.000
183A183ARG10.9100.98245.3450.0480.0480.0000.0000.0000.000
184A184ALA0-0.0280.00344.835-0.005-0.0050.0000.0000.0000.000