FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: 2N6RR

Calculation Name: 4AEZ-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 4AEZ

Chain ID: A

ChEMBL ID:

UniProt ID: O14417

Base Structure: X-ray

Registration Date: 2023-09-24

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 326
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -4796846.59101
FMO2-HF: Nuclear repulsion 4672405.441993
FMO2-HF: Total energy -124441.149017
FMO2-MP2: Total energy -124808.597695


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:125:LEU)


Summations of interaction energy for fragment #1(A:125:LEU)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-2.639-0.0243.85-2.179-4.2860.001
Interaction energy analysis for fragmet #1(A:125:LEU)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.015 / q_NPA : -0.004
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A127THR0-0.007-0.0072.131-2.553-0.3023.759-2.386-3.6240.004
4A128ARG10.9690.9893.331-0.3390.0250.0910.207-0.662-0.003
5A129VAL00.0420.0214.8090.2180.2180.0000.0000.0000.000
6A130LEU0-0.051-0.0317.258-0.044-0.0440.0000.0000.0000.000
7A131ALA00.0380.01711.0890.0270.0270.0000.0000.0000.000
8A132PHE0-0.0040.00014.415-0.001-0.0010.0000.0000.0000.000
9A133LYS10.9580.97318.0780.1190.1190.0000.0000.0000.000
10A134LEU0-0.045-0.01919.7820.0020.0020.0000.0000.0000.000
11A135ASP-1-0.867-0.92422.659-0.109-0.1090.0000.0000.0000.000
12A136ALA0-0.014-0.00824.4250.0090.0090.0000.0000.0000.000
13A137PRO0-0.034-0.02925.827-0.001-0.0010.0000.0000.0000.000
14A138GLU-1-0.851-0.91329.659-0.051-0.0510.0000.0000.0000.000
15A139ALA0-0.004-0.00231.5360.0050.0050.0000.0000.0000.000
16A140LYS10.9480.97533.3460.0320.0320.0000.0000.0000.000
17A141LYS10.8620.91835.6950.0450.0450.0000.0000.0000.000
18A142PRO00.0000.01038.9360.0010.0010.0000.0000.0000.000
19A143VAL0-0.004-0.00841.227-0.001-0.0010.0000.0000.0000.000
20A144ASP-1-0.955-0.96243.142-0.009-0.0090.0000.0000.0000.000
21A162ARG10.7830.84766.514-0.005-0.0050.0000.0000.0000.000
22A163ARG10.9270.97066.0070.0000.0000.0000.0000.0000.000
23A164PHE00.0510.01962.3670.0000.0000.0000.0000.0000.000
24A165ASN00.0060.00566.942-0.001-0.0010.0000.0000.0000.000
25A166THR00.0250.01062.8620.0000.0000.0000.0000.0000.000
26A167THR0-0.002-0.00462.985-0.001-0.0010.0000.0000.0000.000
27A168PRO0-0.0280.00462.0590.0000.0000.0000.0000.0000.000
28A169GLU-1-0.828-0.91364.5860.0040.0040.0000.0000.0000.000
29A170ARG10.8290.91565.532-0.005-0.0050.0000.0000.0000.000
30A171VAL00.002-0.01260.2810.0000.0000.0000.0000.0000.000
31A172LEU0-0.048-0.01261.3460.0000.0000.0000.0000.0000.000
32A173ASP-1-0.870-0.94058.4350.0030.0030.0000.0000.0000.000
33A174ALA0-0.040-0.02255.3600.0010.0010.0000.0000.0000.000
34A175PRO00.0400.03153.6670.0000.0000.0000.0000.0000.000
35A176GLY00.0470.01050.0490.0010.0010.0000.0000.0000.000
36A177ILE0-0.051-0.02049.9470.0020.0020.0000.0000.0000.000
37A178ILE00.0190.01244.292-0.001-0.0010.0000.0000.0000.000
38A179ASP-1-0.750-0.82643.6730.0070.0070.0000.0000.0000.000
39A180ASP-1-0.805-0.91441.2160.0230.0230.0000.0000.0000.000
40A181TYR0-0.012-0.01141.8200.0010.0010.0000.0000.0000.000
41A182TYR0-0.097-0.07537.6870.0000.0000.0000.0000.0000.000
42A183LEU0-0.0050.03243.3300.0020.0020.0000.0000.0000.000
43A184ASN0-0.081-0.07346.410-0.002-0.0020.0000.0000.0000.000
44A185LEU00.0250.01948.3990.0010.0010.0000.0000.0000.000
45A186LEU00.0160.01252.060-0.001-0.0010.0000.0000.0000.000
46A187ASP-1-0.796-0.87455.5230.0170.0170.0000.0000.0000.000
47A188TRP0-0.027-0.03058.360-0.001-0.0010.0000.0000.0000.000
48A189SER00.0310.03262.2140.0000.0000.0000.0000.0000.000
49A190ASN0-0.027-0.05664.707-0.001-0.0010.0000.0000.0000.000
50A191LEU0-0.0270.00867.8110.0000.0000.0000.0000.0000.000
51A192ASN0-0.032-0.02468.0400.0000.0000.0000.0000.0000.000
52A193VAL0-0.0040.00664.616-0.001-0.0010.0000.0000.0000.000
53A194VAL0-0.0010.00960.6190.0010.0010.0000.0000.0000.000
54A195ALA00.0150.00358.7220.0000.0000.0000.0000.0000.000
55A196VAL0-0.003-0.01255.4250.0000.0000.0000.0000.0000.000
56A197ALA0-0.011-0.00252.3310.0000.0000.0000.0000.0000.000
57A198LEU0-0.038-0.00751.8820.0000.0000.0000.0000.0000.000
58A199GLU-1-0.895-0.95348.4260.0100.0100.0000.0000.0000.000
59A200ARG10.7980.88348.468-0.013-0.0130.0000.0000.0000.000
60A201ASN0-0.0070.01151.0120.0010.0010.0000.0000.0000.000
61A202VAL0-0.020-0.01154.2560.0000.0000.0000.0000.0000.000
62A203TYR00.0260.01456.1680.0000.0000.0000.0000.0000.000
63A204VAL0-0.013-0.01659.7330.0000.0000.0000.0000.0000.000
64A205TRP00.0050.00062.622-0.001-0.0010.0000.0000.0000.000
65A206ASN00.0080.02565.2020.0000.0000.0000.0000.0000.000
66A207ALA00.004-0.00167.687-0.001-0.0010.0000.0000.0000.000
67A208ASP-1-0.888-0.92069.2580.0080.0080.0000.0000.0000.000
68A209SER0-0.039-0.04372.2960.0000.0000.0000.0000.0000.000
69A210GLY0-0.0160.00069.8820.0000.0000.0000.0000.0000.000
70A211SER0-0.031-0.02669.2260.0000.0000.0000.0000.0000.000
71A212VAL00.008-0.00863.7210.0000.0000.0000.0000.0000.000
72A213SER0-0.055-0.04864.6270.0000.0000.0000.0000.0000.000
73A214ALA00.0120.00160.5440.0000.0000.0000.0000.0000.000
74A215LEU0-0.060-0.01459.3620.0000.0000.0000.0000.0000.000
75A216ALA00.006-0.00956.7010.0010.0010.0000.0000.0000.000
76A217GLU-1-0.791-0.87154.4020.0130.0130.0000.0000.0000.000
77A218THR0-0.088-0.04149.6710.0010.0010.0000.0000.0000.000
78A219ASP-1-0.832-0.89448.3400.0230.0230.0000.0000.0000.000
79A220GLU-1-0.913-0.96647.6040.0170.0170.0000.0000.0000.000
80A221SER0-0.103-0.06144.1540.0010.0010.0000.0000.0000.000
81A222THR0-0.090-0.06343.8410.0020.0020.0000.0000.0000.000
82A223TYR00.0420.02741.189-0.001-0.0010.0000.0000.0000.000
83A224VAL00.0210.01147.4490.0020.0020.0000.0000.0000.000
84A225ALA0-0.033-0.01946.016-0.001-0.0010.0000.0000.0000.000
85A226SER0-0.016-0.04047.6990.0000.0000.0000.0000.0000.000
86A227VAL00.0180.01550.6330.0000.0000.0000.0000.0000.000
87A228LYS10.8160.89754.480-0.017-0.0170.0000.0000.0000.000
88A229TRP00.0640.03557.0770.0010.0010.0000.0000.0000.000
89A230SER0-0.044-0.04160.7270.0010.0010.0000.0000.0000.000
90A231HIS0-0.022-0.02362.8060.0000.0000.0000.0000.0000.000
91A232ASP-1-0.831-0.87665.0010.0160.0160.0000.0000.0000.000
92A233GLY0-0.026-0.01265.396-0.001-0.0010.0000.0000.0000.000
93A234SER00.040-0.00466.1540.0000.0000.0000.0000.0000.000
94A235PHE0-0.031-0.00762.9650.0000.0000.0000.0000.0000.000
95A236LEU0-0.0180.00358.4630.0000.0000.0000.0000.0000.000
96A237SER0-0.064-0.04356.0250.0010.0010.0000.0000.0000.000
97A238VAL00.0480.01253.055-0.001-0.0010.0000.0000.0000.000
98A239GLY00.0040.01650.4500.0010.0010.0000.0000.0000.000
99A240LEU00.0380.02548.318-0.001-0.0010.0000.0000.0000.000
100A241GLY00.0500.01144.2360.0020.0020.0000.0000.0000.000
101A242ASN00.029-0.00942.7960.0020.0020.0000.0000.0000.000
102A243GLY0-0.0260.00744.3200.0020.0020.0000.0000.0000.000
103A244LEU0-0.046-0.02845.7850.0010.0010.0000.0000.0000.000
104A245VAL00.012-0.00249.466-0.001-0.0010.0000.0000.0000.000
105A246ASP-1-0.737-0.81952.4410.0240.0240.0000.0000.0000.000
106A247ILE0-0.049-0.03855.4350.0000.0000.0000.0000.0000.000
107A248TYR00.022-0.01356.6300.0000.0000.0000.0000.0000.000
108A249ASP-1-0.815-0.87761.7310.0150.0150.0000.0000.0000.000
109A250VAL0-0.016-0.00565.4930.0000.0000.0000.0000.0000.000
110A251GLU-1-0.906-0.95766.6650.0120.0120.0000.0000.0000.000
111A252SER0-0.089-0.06768.3200.0000.0000.0000.0000.0000.000
112A253GLN00.0260.03264.8300.0000.0000.0000.0000.0000.000
113A254THR0-0.019-0.00864.0020.0010.0010.0000.0000.0000.000
114A255LYS10.8050.89255.856-0.022-0.0220.0000.0000.0000.000
115A256LEU0-0.0140.00661.7730.0000.0000.0000.0000.0000.000
116A257ARG10.7750.86658.352-0.026-0.0260.0000.0000.0000.000
117A258THR00.014-0.01753.267-0.001-0.0010.0000.0000.0000.000
118A259MET0-0.079-0.03153.9080.0000.0000.0000.0000.0000.000
119A260ALA00.0570.03748.9930.0000.0000.0000.0000.0000.000
120A261GLY00.021-0.01348.0920.0000.0000.0000.0000.0000.000
121A262HIS0-0.0550.00244.7030.0040.0040.0000.0000.0000.000
122A263GLN00.0250.00939.959-0.002-0.0020.0000.0000.0000.000
123A264ALA00.007-0.00539.4030.0020.0020.0000.0000.0000.000
124A265ARG10.7850.89440.358-0.029-0.0290.0000.0000.0000.000
125A266VAL0-0.0120.00743.3410.0020.0020.0000.0000.0000.000
126A267GLY00.0680.05845.370-0.002-0.0020.0000.0000.0000.000
127A268CYS0-0.065-0.01646.246-0.002-0.0020.0000.0000.0000.000
128A269LEU00.0230.01349.2940.0020.0020.0000.0000.0000.000
129A270SER00.0000.00652.783-0.002-0.0020.0000.0000.0000.000
130A271TRP00.0120.00555.8070.0020.0020.0000.0000.0000.000
131A272ASN0-0.055-0.03359.127-0.001-0.0010.0000.0000.0000.000
132A273ARG10.8790.93461.128-0.021-0.0210.0000.0000.0000.000
133A274HIS0-0.0010.00563.153-0.001-0.0010.0000.0000.0000.000
134A275VAL0-0.043-0.01957.8680.0010.0010.0000.0000.0000.000
135A276LEU00.0200.01655.201-0.001-0.0010.0000.0000.0000.000
136A277SER0-0.023-0.02052.8570.0010.0010.0000.0000.0000.000
137A278SER00.017-0.01150.429-0.001-0.0010.0000.0000.0000.000
138A279GLY00.0330.01047.0870.0020.0020.0000.0000.0000.000
139A280SER00.0210.00542.960-0.001-0.0010.0000.0000.0000.000
140A281ARG10.9070.92135.416-0.037-0.0370.0000.0000.0000.000
141A282SER0-0.028-0.03038.4100.0020.0020.0000.0000.0000.000
142A283GLY0-0.035-0.00639.4100.0030.0030.0000.0000.0000.000
143A284ALA0-0.011-0.00441.336-0.001-0.0010.0000.0000.0000.000
144A285ILE00.003-0.01443.960-0.002-0.0020.0000.0000.0000.000
145A286HIS0-0.035-0.02046.2680.0010.0010.0000.0000.0000.000
146A287HIS00.0380.02850.354-0.002-0.0020.0000.0000.0000.000
147A288HIS00.0400.01651.7500.0010.0010.0000.0000.0000.000
148A289ASP-1-0.746-0.85056.2020.0240.0240.0000.0000.0000.000
149A290VAL00.0370.00558.7260.0000.0000.0000.0000.0000.000
150A291ARG10.8350.90260.686-0.024-0.0240.0000.0000.0000.000
151A292ILE0-0.0070.01460.2630.0000.0000.0000.0000.0000.000
152A293ALA00.0390.02360.4830.0010.0010.0000.0000.0000.000
153A294ASN0-0.012-0.01155.5150.0010.0010.0000.0000.0000.000
154A295HIS00.0640.04452.204-0.001-0.0010.0000.0000.0000.000
155A296GLN0-0.0350.00149.0370.0000.0000.0000.0000.0000.000
156A297ILE00.001-0.00354.6630.0010.0010.0000.0000.0000.000
157A298GLY0-0.010-0.00853.2220.0000.0000.0000.0000.0000.000
158A299THR0-0.021-0.00347.9860.0000.0000.0000.0000.0000.000
159A300LEU0-0.045-0.01548.3140.0000.0000.0000.0000.0000.000
160A301GLN00.0390.00740.209-0.002-0.0020.0000.0000.0000.000
161A302GLY00.0050.00743.6730.0010.0010.0000.0000.0000.000
162A303HIS0-0.0210.02141.166-0.003-0.0030.0000.0000.0000.000
163A304SER0-0.047-0.04235.6320.0020.0020.0000.0000.0000.000
164A305SER0-0.011-0.00835.6930.0020.0020.0000.0000.0000.000
165A306GLU-1-0.756-0.84837.7760.0320.0320.0000.0000.0000.000
166A307VAL0-0.0060.01540.326-0.002-0.0020.0000.0000.0000.000
167A308CYS0-0.069-0.00742.248-0.001-0.0010.0000.0000.0000.000
168A309GLY00.0630.03144.892-0.002-0.0020.0000.0000.0000.000
169A310LEU0-0.038-0.03248.4760.0020.0020.0000.0000.0000.000
170A311ALA00.0230.01751.085-0.001-0.0010.0000.0000.0000.000
171A312TRP0-0.011-0.01154.7590.0010.0010.0000.0000.0000.000
172A313ARG10.7620.86157.616-0.021-0.0210.0000.0000.0000.000
173A314SER00.0480.01460.3520.0000.0000.0000.0000.0000.000
174A315ASP-1-0.766-0.85663.5240.0200.0200.0000.0000.0000.000
175A316GLY00.0230.01761.5460.0000.0000.0000.0000.0000.000
176A317LEU0-0.056-0.03561.8430.0010.0010.0000.0000.0000.000
177A318GLN0-0.079-0.05057.3520.0000.0000.0000.0000.0000.000
178A319LEU00.0120.02352.435-0.001-0.0010.0000.0000.0000.000
179A320ALA0-0.010-0.00552.2600.0010.0010.0000.0000.0000.000
180A321SER00.008-0.01147.300-0.001-0.0010.0000.0000.0000.000
181A322GLY00.0330.01945.9480.0000.0000.0000.0000.0000.000
182A323GLY00.0330.02742.1610.0000.0000.0000.0000.0000.000
183A324ASN00.045-0.00835.436-0.005-0.0050.0000.0000.0000.000
184A325ASP-1-0.801-0.88037.0490.0450.0450.0000.0000.0000.000
185A326ASN0-0.015-0.00637.2830.0000.0000.0000.0000.0000.000
186A327VAL0-0.0490.00540.184-0.002-0.0020.0000.0000.0000.000
187A328VAL00.013-0.00142.749-0.001-0.0010.0000.0000.0000.000
188A329GLN0-0.0060.01144.1340.0000.0000.0000.0000.0000.000
189A330ILE0-0.005-0.00248.401-0.002-0.0020.0000.0000.0000.000
190A331TRP00.0450.01346.8440.0020.0020.0000.0000.0000.000
191A332ASP-1-0.761-0.86353.6690.0260.0260.0000.0000.0000.000
192A333ALA00.012-0.01656.4870.0010.0010.0000.0000.0000.000
193A334ARG10.8550.93156.799-0.029-0.0290.0000.0000.0000.000
194A335SER0-0.081-0.05353.7690.0010.0010.0000.0000.0000.000
195A336SER00.0580.02350.531-0.001-0.0010.0000.0000.0000.000
196A337ILE00.0080.01849.1320.0020.0020.0000.0000.0000.000
197A338PRO00.0150.01947.163-0.002-0.0020.0000.0000.0000.000
198A339LYS10.7580.88750.491-0.026-0.0260.0000.0000.0000.000
199A340PHE0-0.032-0.03450.863-0.001-0.0010.0000.0000.0000.000
200A341THR00.0200.00144.2940.0010.0010.0000.0000.0000.000
201A342LYS10.8030.90246.578-0.028-0.0280.0000.0000.0000.000
202A343THR00.0740.02741.4350.0000.0000.0000.0000.0000.000
203A344ASN0-0.019-0.01442.3910.0010.0010.0000.0000.0000.000
204A345HIS0-0.0020.03143.477-0.002-0.0020.0000.0000.0000.000
205A346ASN0-0.044-0.04439.1630.0030.0030.0000.0000.0000.000
206A347ALA0-0.047-0.02238.3350.0000.0000.0000.0000.0000.000
207A348ALA00.0350.02239.5420.0000.0000.0000.0000.0000.000
208A349VAL0-0.025-0.01141.109-0.003-0.0030.0000.0000.0000.000
209A350LYS10.8460.93744.869-0.017-0.0170.0000.0000.0000.000
210A351ALA0-0.0060.01746.7370.0000.0000.0000.0000.0000.000
211A352VAL00.010-0.01649.4490.0010.0010.0000.0000.0000.000
212A353ALA00.0180.01552.1410.0000.0000.0000.0000.0000.000
213A354TRP00.007-0.01555.9830.0000.0000.0000.0000.0000.000
214A355CYS0-0.0250.01058.942-0.001-0.0010.0000.0000.0000.000
215A356PRO00.0060.00361.8960.0000.0000.0000.0000.0000.000
216A357TRP0-0.019-0.01763.9790.0000.0000.0000.0000.0000.000
217A358GLN0-0.014-0.02563.8550.0000.0000.0000.0000.0000.000
218A359SER00.0760.04163.4130.0000.0000.0000.0000.0000.000
219A360ASN0-0.0010.00461.3590.0010.0010.0000.0000.0000.000
220A361LEU0-0.060-0.00558.8000.0010.0010.0000.0000.0000.000
221A362LEU0-0.0070.00353.0420.0000.0000.0000.0000.0000.000
222A363ALA00.0030.00754.6890.0000.0000.0000.0000.0000.000
223A364THR0-0.006-0.02449.1860.0010.0010.0000.0000.0000.000
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