FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: 37QJL

Calculation Name: 2WCS-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 2WCS

Chain ID: A

ChEMBL ID:

UniProt ID: B2IUW9

Base Structure: X-ray

Registration Date: 2023-09-26

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 486
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -9895412.914325
FMO2-HF: Nuclear repulsion 9703538.441875
FMO2-HF: Total energy -191874.472449
FMO2-MP2: Total energy -192444.912647


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:MET)


Summations of interaction energy for fragment #1(A:1:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-1.586-0.187-0.009-0.507-0.8830.002
Interaction energy analysis for fragmet #1(A:1:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.030 / q_NPA : -0.037
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3ILE00.0330.0193.861-1.333-0.069-0.008-0.501-0.7550.002
4A4GLN0-0.044-0.0254.6550.6230.758-0.001-0.006-0.1280.000
5A5THR0-0.008-0.0088.438-0.066-0.0660.0000.0000.0000.000
6A6PRO00.0030.01211.9740.0460.0460.0000.0000.0000.000
7A7ASP-1-0.799-0.89614.678-0.054-0.0540.0000.0000.0000.000
8A8TRP0-0.109-0.07516.4760.0240.0240.0000.0000.0000.000
9A9VAL0-0.011-0.00217.9530.0120.0120.0000.0000.0000.000
10A10LYS10.7780.87912.8500.1870.1870.0000.0000.0000.000
11A11HIS0-0.0250.00419.5570.0150.0150.0000.0000.0000.000
12A12ALA0-0.0090.01922.7010.0080.0080.0000.0000.0000.000
13A13VAL0-0.019-0.02324.5150.0020.0020.0000.0000.0000.000
14A14PHE00.0130.00222.0840.0000.0000.0000.0000.0000.000
15A15TYR0-0.052-0.06127.9180.0040.0040.0000.0000.0000.000
16A16GLN00.0520.04329.725-0.001-0.0010.0000.0000.0000.000
17A17ILE0-0.004-0.01431.1480.0050.0050.0000.0000.0000.000
18A18PHE00.0430.02433.257-0.002-0.0020.0000.0000.0000.000
19A19PRO00.0290.00734.3780.0030.0030.0000.0000.0000.000
20A20ASP-1-0.823-0.91237.348-0.032-0.0320.0000.0000.0000.000
21A21ARG10.6840.81739.7890.0320.0320.0000.0000.0000.000
22A22PHE00.0420.04338.1320.0010.0010.0000.0000.0000.000
23A23ALA00.0670.02640.3000.0020.0020.0000.0000.0000.000
24A24ARG10.8730.94642.1880.0220.0220.0000.0000.0000.000
25A25SER0-0.016-0.03044.2270.0010.0010.0000.0000.0000.000
26A26LYS10.7590.89044.4550.0260.0260.0000.0000.0000.000
27A27GLN0-0.0040.00345.8890.0010.0010.0000.0000.0000.000
28A28PRO0-0.011-0.01248.918-0.001-0.0010.0000.0000.0000.000
29A29ARG10.8350.90243.5300.0280.0280.0000.0000.0000.000
30A30LYS10.8300.93647.8270.0240.0240.0000.0000.0000.000
31A31ARG10.8310.90144.4630.0270.0270.0000.0000.0000.000
32A32LEU00.0120.00944.706-0.001-0.0010.0000.0000.0000.000
33A33LEU0-0.0030.00346.178-0.001-0.0010.0000.0000.0000.000
34A34GLN00.0250.00343.5820.0000.0000.0000.0000.0000.000
35A35GLU-1-0.876-0.93847.381-0.026-0.0260.0000.0000.0000.000
36A36ALA0-0.042-0.01150.4100.0010.0010.0000.0000.0000.000
37A37ARG10.8550.92253.2330.0180.0180.0000.0000.0000.000
38A38TRP00.0430.00551.3300.0000.0000.0000.0000.0000.000
39A39GLU-1-0.856-0.91857.136-0.017-0.0170.0000.0000.0000.000
40A40ASP-1-0.887-0.94958.131-0.017-0.0170.0000.0000.0000.000
41A41TRP00.0080.00250.469-0.001-0.0010.0000.0000.0000.000
42A42ASP-1-0.847-0.92356.905-0.017-0.0170.0000.0000.0000.000
43A43SER0-0.057-0.02059.2390.0000.0000.0000.0000.0000.000
44A44MET0-0.056-0.01253.946-0.001-0.0010.0000.0000.0000.000
45A45PRO00.0540.01854.650-0.001-0.0010.0000.0000.0000.000
46A46THR0-0.030-0.01750.0560.0000.0000.0000.0000.0000.000
47A47LEU0-0.031-0.00849.280-0.001-0.0010.0000.0000.0000.000
48A48GLN0-0.099-0.05251.109-0.001-0.0010.0000.0000.0000.000
49A49GLY00.0520.02453.6830.0000.0000.0000.0000.0000.000
50A50TYR0-0.086-0.03743.0870.0000.0000.0000.0000.0000.000
51A51LYS10.9460.96448.6750.0230.0230.0000.0000.0000.000
52A52GLY0-0.0060.00544.8590.0000.0000.0000.0000.0000.000
53A53GLY00.0250.01041.9850.0010.0010.0000.0000.0000.000
54A54ASP-1-0.748-0.88340.450-0.030-0.0300.0000.0000.0000.000
55A55LEU00.0280.00534.7230.0000.0000.0000.0000.0000.000
56A56TRP0-0.0040.00738.1800.0000.0000.0000.0000.0000.000
57A57GLY00.0190.00941.0430.0010.0010.0000.0000.0000.000
58A58ILE0-0.057-0.01935.0410.0000.0000.0000.0000.0000.000
59A59MET0-0.027-0.00237.5900.0000.0000.0000.0000.0000.000
60A60GLU-1-0.741-0.87138.517-0.025-0.0250.0000.0000.0000.000
61A61ASP-1-0.850-0.90840.774-0.025-0.0250.0000.0000.0000.000
62A62LEU0-0.002-0.00734.5500.0000.0000.0000.0000.0000.000
63A63ASP-1-0.815-0.87937.508-0.024-0.0240.0000.0000.0000.000
64A64TYR0-0.098-0.06339.1620.0020.0020.0000.0000.0000.000
65A65ILE0-0.010-0.00634.0470.0000.0000.0000.0000.0000.000
66A66GLN00.0490.02133.5090.0000.0000.0000.0000.0000.000
67A67ASN0-0.023-0.00435.9770.0020.0020.0000.0000.0000.000
68A68LEU0-0.028-0.00235.5960.0020.0020.0000.0000.0000.000
69A69GLY00.0240.01334.3400.0010.0010.0000.0000.0000.000
70A70ILE0-0.087-0.02930.742-0.001-0.0010.0000.0000.0000.000
71A71ASN00.004-0.00326.697-0.003-0.0030.0000.0000.0000.000
72A72ALA00.0390.02725.669-0.003-0.0030.0000.0000.0000.000
73A73ILE0-0.0130.00527.6910.0020.0020.0000.0000.0000.000
74A74TYR0-0.001-0.02526.419-0.006-0.0060.0000.0000.0000.000
75A75PHE0-0.002-0.00328.3370.0060.0060.0000.0000.0000.000
76A76THR00.0530.03629.102-0.002-0.0020.0000.0000.0000.000
77A77PRO0-0.026-0.01330.100-0.001-0.0010.0000.0000.0000.000
78A78ILE00.004-0.00430.9900.0040.0040.0000.0000.0000.000
79A79PHE00.0060.01827.4180.0020.0020.0000.0000.0000.000
80A80GLN00.0440.04133.3430.0030.0030.0000.0000.0000.000
81A81SER00.0400.01736.0290.0000.0000.0000.0000.0000.000
82A82ALA00.0200.02238.0120.0010.0010.0000.0000.0000.000
83A83SER00.0660.01740.575-0.001-0.0010.0000.0000.0000.000
84A84ASN0-0.041-0.01340.9910.0010.0010.0000.0000.0000.000
85A85HIS10.8400.91039.2510.0320.0320.0000.0000.0000.000
86A86ARG10.8370.90635.1100.0390.0390.0000.0000.0000.000
87A87TYR00.0730.03230.351-0.001-0.0010.0000.0000.0000.000
88A88HIS0-0.038-0.00833.549-0.001-0.0010.0000.0000.0000.000
89A89THR0-0.023-0.00931.3540.0020.0020.0000.0000.0000.000
90A90HIS0-0.054-0.01334.3240.0020.0020.0000.0000.0000.000
91A91ASP-1-0.812-0.93233.122-0.054-0.0540.0000.0000.0000.000
92A92TYR00.000-0.01628.4410.0020.0020.0000.0000.0000.000
93A93TYR00.0190.01526.608-0.005-0.0050.0000.0000.0000.000
94A94GLN0-0.044-0.01031.1680.0020.0020.0000.0000.0000.000
95A95VAL00.0210.01032.5800.0000.0000.0000.0000.0000.000
96A96ASP-1-0.795-0.92234.689-0.036-0.0360.0000.0000.0000.000
97A97PRO00.012-0.01037.8800.0010.0010.0000.0000.0000.000
98A98MET0-0.041-0.00141.1900.0020.0020.0000.0000.0000.000
99A99LEU0-0.016-0.00536.4780.0010.0010.0000.0000.0000.000
100A100GLY00.026-0.00239.3230.0000.0000.0000.0000.0000.000
101A101GLY00.0010.01037.8450.0000.0000.0000.0000.0000.000
102A102ASN00.0510.00733.284-0.001-0.0010.0000.0000.0000.000
103A103GLU-1-0.899-0.94735.621-0.035-0.0350.0000.0000.0000.000
104A104ALA00.0290.02237.7730.0000.0000.0000.0000.0000.000
105A105PHE00.011-0.00228.7230.0000.0000.0000.0000.0000.000
106A106LYS10.8490.91830.8460.0530.0530.0000.0000.0000.000
107A107GLU-1-0.886-0.95034.249-0.033-0.0330.0000.0000.0000.000
108A108LEU00.010-0.00333.2750.0000.0000.0000.0000.0000.000
109A109LEU00.000-0.00127.779-0.001-0.0010.0000.0000.0000.000
110A110ASP-1-0.836-0.89230.953-0.052-0.0520.0000.0000.0000.000
111A111ALA0-0.014-0.00732.9170.0020.0020.0000.0000.0000.000
112A112ALA0-0.009-0.00530.8460.0020.0020.0000.0000.0000.000
113A113HIS10.8380.89525.8290.0690.0690.0000.0000.0000.000
114A114GLN0-0.068-0.02830.0150.0040.0040.0000.0000.0000.000
115A115ARG10.7770.87332.8820.0320.0320.0000.0000.0000.000
116A116ASN0-0.061-0.03526.563-0.002-0.0020.0000.0000.0000.000
117A117ILE0-0.0320.00028.550-0.001-0.0010.0000.0000.0000.000
118A118LYS10.8260.90421.2260.0870.0870.0000.0000.0000.000
119A119VAL00.005-0.01325.8930.0040.0040.0000.0000.0000.000
120A120VAL0-0.0270.00522.552-0.006-0.0060.0000.0000.0000.000
121A121LEU0-0.017-0.01124.5920.0080.0080.0000.0000.0000.000
122A122ASP-1-0.776-0.89024.719-0.075-0.0750.0000.0000.0000.000
123A123GLY00.028-0.00223.7590.0030.0030.0000.0000.0000.000
124A124VAL0-0.069-0.03024.8440.0000.0000.0000.0000.0000.000
125A125PHE00.0480.03522.5470.0010.0010.0000.0000.0000.000
126A126ASN0-0.016-0.00625.8810.0010.0010.0000.0000.0000.000
127A127HIS00.0240.00027.1500.0050.0050.0000.0000.0000.000
128A128SER00.0150.01430.466-0.002-0.0020.0000.0000.0000.000
129A129SER0-0.053-0.06233.0300.0030.0030.0000.0000.0000.000
130A130ARG10.8680.91336.8500.0280.0280.0000.0000.0000.000
131A131GLY00.0220.01839.4500.0010.0010.0000.0000.0000.000
132A132PHE00.0130.01830.6270.0000.0000.0000.0000.0000.000
133A133PHE00.0110.01434.8170.0010.0010.0000.0000.0000.000
134A134PHE00.0390.01531.4110.0020.0020.0000.0000.0000.000
135A135PHE0-0.003-0.00134.8190.0020.0020.0000.0000.0000.000
136A136HIS0-0.053-0.04236.4130.0020.0020.0000.0000.0000.000
137A137ASP-1-0.774-0.86937.652-0.033-0.0330.0000.0000.0000.000
138A138VAL00.0030.00036.0620.0020.0020.0000.0000.0000.000
139A139LEU0-0.102-0.05039.3170.0020.0020.0000.0000.0000.000
140A140GLU-1-0.928-0.94342.457-0.026-0.0260.0000.0000.0000.000
141A141ASN0-0.072-0.04140.8140.0020.0020.0000.0000.0000.000
142A142GLY00.0100.00442.9790.0010.0010.0000.0000.0000.000
143A143PRO0-0.080-0.05741.126-0.001-0.0010.0000.0000.0000.000
144A144HIS0-0.036-0.01140.680-0.001-0.0010.0000.0000.0000.000
145A145SER0-0.028-0.01737.774-0.001-0.0010.0000.0000.0000.000
146A146PRO0-0.021-0.02235.3800.0000.0000.0000.0000.0000.000
147A147TRP00.0000.00731.673-0.001-0.0010.0000.0000.0000.000
148A148VAL00.0210.01433.7240.0000.0000.0000.0000.0000.000
149A149ASN0-0.008-0.01028.9180.0020.0020.0000.0000.0000.000
150A150TRP0-0.003-0.00428.402-0.002-0.0020.0000.0000.0000.000
151A151PHE0-0.0010.00229.772-0.002-0.0020.0000.0000.0000.000
152A152LYS10.8560.94228.1610.0420.0420.0000.0000.0000.000
153A153ILE0-0.049-0.02432.8150.0020.0020.0000.0000.0000.000
154A154GLU-1-0.928-0.97035.952-0.024-0.0240.0000.0000.0000.000
155A155GLY0-0.036-0.02538.5740.0010.0010.0000.0000.0000.000
156A156TRP00.0210.00838.9400.0000.0000.0000.0000.0000.000
157A157PRO00.000-0.01944.5650.0010.0010.0000.0000.0000.000
158A158LEU00.0160.03240.8090.0000.0000.0000.0000.0000.000
159A159SER0-0.031-0.01044.9420.0000.0000.0000.0000.0000.000
160A160PRO00.1010.05742.6430.0000.0000.0000.0000.0000.000
161A161TYR0-0.014-0.02444.099-0.001-0.0010.0000.0000.0000.000
162A162ASN0-0.011-0.01746.9040.0000.0000.0000.0000.0000.000
163A163GLY00.0110.01447.8110.0000.0000.0000.0000.0000.000
164A164GLU-1-0.893-0.93248.791-0.017-0.0170.0000.0000.0000.000
165A165PHE0-0.0120.00149.5660.0000.0000.0000.0000.0000.000
166A166PRO00.0410.01645.444-0.001-0.0010.0000.0000.0000.000
167A167ALA0-0.044-0.01342.1550.0000.0000.0000.0000.0000.000
168A168ASN0-0.026-0.00341.5130.0000.0000.0000.0000.0000.000
169A169TYR00.036-0.02736.7470.0000.0000.0000.0000.0000.000
170A170VAL00.0520.04333.5040.0000.0000.0000.0000.0000.000
171A171GLY00.0100.00534.721-0.002-0.0020.0000.0000.0000.000
172A172TRP00.0530.02230.3610.0020.0020.0000.0000.0000.000
173A173ALA0-0.042-0.01933.5510.0010.0010.0000.0000.0000.000
174A174GLY00.0240.02335.3610.0020.0020.0000.0000.0000.000
175A175ASN0-0.031-0.01837.3970.0020.0020.0000.0000.0000.000
176A176ARG10.8510.90738.0280.0220.0220.0000.0000.0000.000
177A177ALA0-0.055-0.02539.8710.0000.0000.0000.0000.0000.000
178A178LEU0-0.016-0.00234.254-0.001-0.0010.0000.0000.0000.000
179A179PRO0-0.0260.01234.6900.0000.0000.0000.0000.0000.000
180A180GLU-1-0.749-0.87130.272-0.042-0.0420.0000.0000.0000.000
181A181PHE00.000-0.00527.3130.0020.0020.0000.0000.0000.000
182A182ASN0-0.086-0.04827.4960.0020.0020.0000.0000.0000.000
183A183HIS0-0.020-0.02622.6160.0010.0010.0000.0000.0000.000
184A184ASP-1-0.844-0.90121.931-0.040-0.0400.0000.0000.0000.000
185A185ASN0-0.104-0.05622.341-0.004-0.0040.0000.0000.0000.000
186A186PRO00.019-0.00520.323-0.004-0.0040.0000.0000.0000.000
187A187GLU-1-0.836-0.90121.752-0.060-0.0600.0000.0000.0000.000
188A188VAL0-0.0180.00124.307-0.003-0.0030.0000.0000.0000.000
189A189ARG10.8220.91814.7260.0760.0760.0000.0000.0000.000
190A190GLU-1-0.819-0.89918.795-0.135-0.1350.0000.0000.0000.000
191A191TYR00.0430.02521.390-0.003-0.0030.0000.0000.0000.000
192A192ILE0-0.012-0.01321.324-0.001-0.0010.0000.0000.0000.000
193A193MET0-0.039-0.00716.084-0.003-0.0030.0000.0000.0000.000
194A194GLU-1-0.941-0.97120.126-0.096-0.0960.0000.0000.0000.000
195A195ILE0-0.028-0.01022.6260.0010.0010.0000.0000.0000.000
196A196ALA00.011-0.00219.6810.0010.0010.0000.0000.0000.000
197A197GLU-1-0.794-0.90318.035-0.159-0.1590.0000.0000.0000.000
198A198TYR0-0.102-0.04120.5610.0020.0020.0000.0000.0000.000
199A199TRP00.007-0.01324.3530.0040.0040.0000.0000.0000.000
200A200LEU0-0.0250.00418.1670.0030.0030.0000.0000.0000.000
201A201LYS10.8270.90820.5190.1310.1310.0000.0000.0000.000
202A202PHE0-0.066-0.02423.6940.0080.0080.0000.0000.0000.000
203A203GLY0-0.0010.00624.8400.0070.0070.0000.0000.0000.000
204A204ILE0-0.058-0.02822.6960.0040.0040.0000.0000.0000.000
205A205ASP-1-0.761-0.85621.695-0.094-0.0940.0000.0000.0000.000
206A206GLY00.0370.00719.646-0.014-0.0140.0000.0000.0000.000
207A207TRP0-0.083-0.03219.4190.0190.0190.0000.0000.0000.000
208A208ARG10.7960.88720.1480.0580.0580.0000.0000.0000.000
209A209LEU0-0.018-0.00818.0900.0030.0030.0000.0000.0000.000
210A210ASP-1-0.782-0.91522.660-0.055-0.0550.0000.0000.0000.000
211A211VAL0-0.009-0.00325.132-0.001-0.0010.0000.0000.0000.000
212A212PRO0-0.0110.01020.1720.0020.0020.0000.0000.0000.000
213A213PHE00.004-0.00321.4540.0010.0010.0000.0000.0000.000
214A214GLU-1-0.823-0.91722.477-0.034-0.0340.0000.0000.0000.000
215A215ILE0-0.0310.00720.8530.0040.0040.0000.0000.0000.000
216A216LYS10.7620.87420.5140.0360.0360.0000.0000.0000.000
217A217THR0-0.024-0.02518.7220.0060.0060.0000.0000.0000.000
218A218PRO0-0.024-0.01616.297-0.001-0.0010.0000.0000.0000.000
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