FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: 37QVL

Calculation Name: 3P91-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 3P91

Chain ID: A

ChEMBL ID:

UniProt ID: C4M9R9

Base Structure: X-ray

Registration Date: 2023-09-26

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 247
LigandResidueName
LigandFragmentNumber 0
LigandCharge DAS=-1
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2946445.237998
FMO2-HF: Nuclear repulsion 2850446.752439
FMO2-HF: Total energy -95998.485559
FMO2-MP2: Total energy -96270.70706


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:MET)


Summations of interaction energy for fragment #1(A:1:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-6.911-5.0870.004-0.709-1.1180.002
Interaction energy analysis for fragmet #1(A:1:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.041 / q_NPA : -0.041
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3ALA00.0090.0233.817-2.335-0.904-0.004-0.635-0.7930.002
4A4PHE00.0290.0045.8380.3200.3200.0000.0000.0000.000
5A5HIS10.7810.8607.0210.6420.6420.0000.0000.0000.000
6A6ALA00.0010.0098.899-0.071-0.0710.0000.0000.0000.000
7A7LYS10.8030.89812.4100.2690.2690.0000.0000.0000.000
8A8PHE00.0280.00815.294-0.029-0.0290.0000.0000.0000.000
9A9LYS10.8510.92118.8910.2750.2750.0000.0000.0000.000
10A10GLU-1-0.853-0.93021.552-0.096-0.0960.0000.0000.0000.000
11A11ALA00.0030.01022.330-0.019-0.0190.0000.0000.0000.000
12A12ALA0-0.004-0.01323.275-0.002-0.0020.0000.0000.0000.000
13A13LEU0-0.0210.00423.1060.0010.0010.0000.0000.0000.000
14A14PHE00.0910.02519.7230.0000.0000.0000.0000.0000.000
15A15LYS10.8010.89623.4240.0890.0890.0000.0000.0000.000
16A16ARG10.8960.94126.0420.1210.1210.0000.0000.0000.000
17A17VAL00.0320.03724.3610.0060.0060.0000.0000.0000.000
18A18VAL00.0270.01623.5480.0030.0030.0000.0000.0000.000
19A19GLU-1-0.802-0.88626.638-0.097-0.0970.0000.0000.0000.000
20A20SER00.012-0.00630.0790.0100.0100.0000.0000.0000.000
21A21LEU00.0140.00825.1390.0050.0050.0000.0000.0000.000
22A22LYS10.8710.92629.2380.1090.1090.0000.0000.0000.000
23A23SER0-0.114-0.05230.7070.0120.0120.0000.0000.0000.000
24A24THR0-0.048-0.02632.5950.0030.0030.0000.0000.0000.000
25A25ILE00.0180.01328.8520.0010.0010.0000.0000.0000.000
26A26ASP-1-0.877-0.92129.968-0.115-0.1150.0000.0000.0000.000
27A27LYS10.8680.91526.6590.1250.1250.0000.0000.0000.000
28A28THR00.0420.02623.7390.0120.0120.0000.0000.0000.000
29A29ASN00.0500.03221.016-0.015-0.0150.0000.0000.0000.000
30A30PHE00.008-0.00718.6120.0300.0300.0000.0000.0000.000
31A31ASP-1-0.814-0.88317.512-0.479-0.4790.0000.0000.0000.000
32A32CYS0-0.066-0.02013.2610.0210.0210.0000.0000.0000.000
33A33SER00.050-0.00513.158-0.031-0.0310.0000.0000.0000.000
34A34ASP-1-0.842-0.94411.704-0.997-0.9970.0000.0000.0000.000
35A35ALA00.0000.00312.9940.0390.0390.0000.0000.0000.000
36A36GLY00.0050.01015.4870.0690.0690.0000.0000.0000.000
37A37ILE0-0.042-0.03915.869-0.072-0.0720.0000.0000.0000.000
38A38ALA00.0110.01018.2090.0490.0490.0000.0000.0000.000
39A39VAL00.002-0.00521.049-0.017-0.0170.0000.0000.0000.000
40A40GLN00.0200.03623.8610.0250.0250.0000.0000.0000.000
41A41CYS00.0060.01026.851-0.003-0.0030.0000.0000.0000.000
42A42MET00.0330.02029.0680.0120.0120.0000.0000.0000.000
43A43ASP-1-0.714-0.82331.902-0.118-0.1180.0000.0000.0000.000
44A44ASN00.008-0.02633.355-0.005-0.0050.0000.0000.0000.000
45A45SER0-0.109-0.06635.1910.0060.0060.0000.0000.0000.000
46A46HIS0-0.101-0.05133.2810.0030.0030.0000.0000.0000.000
47A47VAL0-0.051-0.02537.4200.0050.0050.0000.0000.0000.000
48A48SER0-0.083-0.05637.0470.0000.0000.0000.0000.0000.000
49A49LEU00.0020.00431.110-0.002-0.0020.0000.0000.0000.000
50A50VAL00.0170.00929.2080.0050.0050.0000.0000.0000.000
51A51SER0-0.021-0.03128.247-0.012-0.0120.0000.0000.0000.000
52A52LEU0-0.014-0.01523.9040.0150.0150.0000.0000.0000.000
53A53LEU00.0160.01421.179-0.023-0.0230.0000.0000.0000.000
54A54ILE0-0.010-0.00420.2680.0360.0360.0000.0000.0000.000
55A55GLU-1-0.841-0.92619.772-0.322-0.3220.0000.0000.0000.000
56A56THR00.024-0.00615.3350.0230.0230.0000.0000.0000.000
57A57ASP-1-0.852-0.91817.766-0.265-0.2650.0000.0000.0000.000
58A58ALA0-0.034-0.00120.4700.0380.0380.0000.0000.0000.000
59A59PHE0-0.082-0.05316.2760.0100.0100.0000.0000.0000.000
60A60ASP-1-0.866-0.93217.671-0.182-0.1820.0000.0000.0000.000
61A61GLU-1-0.862-0.91112.082-0.237-0.2370.0000.0000.0000.000
62A62PHE0-0.008-0.00512.257-0.002-0.0020.0000.0000.0000.000
63A63GLN00.0040.0014.4750.0520.168-0.001-0.003-0.1130.000
64A64CYS00.0110.0158.594-0.007-0.0070.0000.0000.0000.000
65A65LEU0-0.0050.0243.639-0.1410.1280.011-0.042-0.2370.000
66A66LYS10.8040.8937.0201.4581.4580.0000.0000.0000.000
67A67PRO00.0340.0159.598-0.129-0.1290.0000.0000.0000.000
68A68ILE0-0.051-0.0109.828-0.049-0.0490.0000.0000.0000.000
69A69THR00.005-0.01413.2540.0500.0500.0000.0000.0000.000
70A70LEU0-0.029-0.01913.182-0.013-0.0130.0000.0000.0000.000
71A71GLY00.0980.06217.2220.0340.0340.0000.0000.0000.000
72A72ILE0-0.037-0.03118.1210.0180.0180.0000.0000.0000.000
73A73ASN00.0250.01322.0350.0140.0140.0000.0000.0000.000
74A74LEU00.0700.02924.8750.0030.0030.0000.0000.0000.000
75A75THR00.0130.01526.3530.0080.0080.0000.0000.0000.000
76A76HIS0-0.029-0.02624.8060.0110.0110.0000.0000.0000.000
77A77LEU00.0500.03520.5620.0140.0140.0000.0000.0000.000
78A78SER0-0.014-0.01823.8850.0120.0120.0000.0000.0000.000
79A79LYS10.8710.93126.9990.0700.0700.0000.0000.0000.000
80A80ILE00.0080.00921.0010.0120.0120.0000.0000.0000.000
81A81LEU00.0350.00721.4010.0120.0120.0000.0000.0000.000
82A82LYS10.7920.89124.8160.0950.0950.0000.0000.0000.000
83A83ALA0-0.055-0.01125.4800.0080.0080.0000.0000.0000.000
84A84LEU0-0.041-0.00821.1460.0110.0110.0000.0000.0000.000
85A85ASP-1-0.775-0.87625.766-0.049-0.0490.0000.0000.0000.000
86A86ASN0-0.058-0.05026.170-0.017-0.0170.0000.0000.0000.000
87A87ASP-1-0.899-0.94326.301-0.049-0.0490.0000.0000.0000.000
88A88CYS0-0.112-0.02823.0640.0020.0020.0000.0000.0000.000
89A89GLY00.0890.02419.959-0.019-0.0190.0000.0000.0000.000
90A90LEU0-0.049-0.02118.2750.0200.0200.0000.0000.0000.000
91A91ILE0-0.007-0.00712.327-0.029-0.0290.0000.0000.0000.000
92A92LEU00.0000.00013.4110.0490.0490.0000.0000.0000.000
93A93ASP-1-0.838-0.9047.741-0.387-0.3870.0000.0000.0000.000
94A94VAL00.0470.0298.6390.1800.1800.0000.0000.0000.000
95A95LYS10.9170.9405.181-3.183-3.110-0.001-0.012-0.0590.000
96A96LYS10.8350.8895.086-0.406-0.471-0.001-0.0170.0840.000
97A97DVA00.0750.0377.5280.1140.1140.0000.0000.0000.000
98A98DAS-1-0.874-0.9259.481-0.151-0.1510.0000.0000.0000.000
99A99ASP-1-0.885-0.93811.723-0.166-0.1660.0000.0000.0000.000
100A100ALA00.0010.00613.6310.0550.0550.0000.0000.0000.000
101A101VAL0-0.0090.00612.939-0.075-0.0750.0000.0000.0000.000
102A102LEU0-0.071-0.04210.3860.1120.1120.0000.0000.0000.000
103A103SER00.0210.01513.879-0.082-0.0820.0000.0000.0000.000
104A104ILE0-0.026-0.03512.5800.0690.0690.0000.0000.0000.000
105A105THR00.0400.02516.598-0.035-0.0350.0000.0000.0000.000
106A106SER0-0.006-0.00317.5010.0430.0430.0000.0000.0000.000
107A107GLU-1-0.770-0.88419.915-0.014-0.0140.0000.0000.0000.000
108A108GLY00.0420.01522.6950.0110.0110.0000.0000.0000.000
109A109THR0-0.011-0.00123.4810.0100.0100.0000.0000.0000.000
110A110ASN0-0.054-0.01925.5150.0020.0020.0000.0000.0000.000
111A111LYS10.8330.90524.740-0.010-0.0100.0000.0000.0000.000
112A112THR0-0.026-0.02718.0720.0080.0080.0000.0000.0000.000
113A113MET0-0.0350.00420.4470.0060.0060.0000.0000.0000.000
114A114LYS10.9660.97714.458-0.317-0.3170.0000.0000.0000.000
115A115PHE00.0020.00617.7540.0140.0140.0000.0000.0000.000
116A116GLY00.0090.00216.524-0.010-0.0100.0000.0000.0000.000
117A117LEU0-0.0230.00217.5110.0140.0140.0000.0000.0000.000
118A118ASN0-0.020-0.01617.620-0.022-0.0220.0000.0000.0000.000
119A119LEU0-0.038-0.00614.736-0.006-0.0060.0000.0000.0000.000
120A120VAL0-0.075-0.04719.1620.0410.0410.0000.0000.0000.000
121A121ASP-1-0.882-0.93621.657-0.256-0.2560.0000.0000.0000.000
122A122ILE0-0.107-0.05322.8770.0270.0270.0000.0000.0000.000
123A123GLU-1-0.854-0.91924.465-0.221-0.2210.0000.0000.0000.000
124A124DAL0-0.082-0.06226.6520.0130.0130.0000.0000.0000.000
125A125GLU-1-0.906-0.90826.637-0.221-0.2210.0000.0000.0000.000
126A126SER0-0.053-0.03525.728-0.001-0.0010.0000.0000.0000.000
127A127VAL0-0.036-0.02827.4820.0190.0190.0000.0000.0000.000
128A128GLU-1-0.905-0.95028.334-0.238-0.2380.0000.0000.0000.000
129A129ILE0-0.050-0.02030.6020.0110.0110.0000.0000.0000.000
130A130PRO0-0.047-0.02232.9790.0040.0040.0000.0000.0000.000
131A131GLU-1-0.886-0.94635.973-0.142-0.1420.0000.0000.0000.000
132A132LEU0-0.059-0.04937.9450.0070.0070.0000.0000.0000.000
133A133GLN0-0.036-0.01840.562-0.001-0.0010.0000.0000.0000.000
134A134SER0-0.0110.01942.6410.0020.0020.0000.0000.0000.000
135A135ASP-1-0.798-0.88944.323-0.077-0.0770.0000.0000.0000.000
136A136ALA00.001-0.01146.7590.0040.0040.0000.0000.0000.000
137A137ILE0-0.0190.00340.475-0.004-0.0040.0000.0000.0000.000
138A138ILE00.0180.01643.5330.0040.0040.0000.0000.0000.000
139A139THR0-0.014-0.00840.703-0.007-0.0070.0000.0000.0000.000
140A140LEU00.0180.00942.5180.0060.0060.0000.0000.0000.000
141A141SER00.0330.02342.042-0.004-0.0040.0000.0000.0000.000
142A142SER0-0.019-0.03437.8730.0050.0050.0000.0000.0000.000
143A143ALA00.0250.01140.6010.0010.0010.0000.0000.0000.000
144A144GLU-1-0.845-0.93442.126-0.056-0.0560.0000.0000.0000.000
145A145PHE00.0330.01541.6290.0020.0020.0000.0000.0000.000
146A146LEU0-0.0080.00039.3390.0010.0010.0000.0000.0000.000
147A147LYS10.8330.91842.8900.0540.0540.0000.0000.0000.000
148A148ILE00.0490.04146.2930.0020.0020.0000.0000.0000.000
149A149THR0-0.013-0.02443.8550.0010.0010.0000.0000.0000.000
150A150LYS10.7830.89842.5620.0720.0720.0000.0000.0000.000
151A151ASP-1-0.791-0.89347.028-0.051-0.0510.0000.0000.0000.000
152A152PHE00.006-0.01149.2350.0020.0020.0000.0000.0000.000
153A153SER0-0.057-0.04246.7050.0000.0000.0000.0000.0000.000
154A154ALA0-0.046-0.00949.1370.0010.0010.0000.0000.0000.000
155A155LEU0-0.044-0.02652.0760.0030.0030.0000.0000.0000.000
156A156GLY00.0440.02052.8380.0010.0010.0000.0000.0000.000
157A157ASP-1-0.834-0.90153.260-0.054-0.0540.0000.0000.0000.000
158A158ASP-1-0.938-0.96848.294-0.070-0.0700.0000.0000.0000.000
159A159SER0-0.106-0.05948.618-0.004-0.0040.0000.0000.0000.000
160A160ILE00.0060.00046.8360.0020.0020.0000.0000.0000.000
161A161THR0-0.031-0.01749.431-0.002-0.0020.0000.0000.0000.000
162A162ILE00.003-0.01046.0910.0010.0010.0000.0000.0000.000
163A163GLY00.0260.01350.195-0.001-0.0010.0000.0000.0000.000
164A164CYS0-0.065-0.02549.910-0.001-0.0010.0000.0000.0000.000
165A165THR00.0340.02352.0410.0010.0010.0000.0000.0000.000
166A166LYS10.8380.91351.9060.0620.0620.0000.0000.0000.000
167A167ASN00.000-0.00153.773-0.002-0.0020.0000.0000.0000.000
168A168GLU-1-0.918-0.96054.257-0.049-0.0490.0000.0000.0000.000
169A169VAL0-0.001-0.00148.966-0.001-0.0010.0000.0000.0000.000
170A170THR0-0.0020.00052.2980.0030.0030.0000.0000.0000.000
171A171LEU0-0.0190.00147.992-0.003-0.0030.0000.0000.0000.000
172A172THR00.016-0.01852.3240.0020.0020.0000.0000.0000.000
173A173THR0-0.0110.00252.305-0.002-0.0020.0000.0000.0000.000
174A174LYS10.8100.89254.4020.0440.0440.0000.0000.0000.000
175A175GLY00.0870.07056.5280.0000.0000.0000.0000.0000.000
176A176ALA0-0.049-0.04457.1140.0010.0010.0000.0000.0000.000
177A177MET0-0.061-0.02457.2420.0020.0020.0000.0000.0000.000
178A178CYS0-0.055-0.01558.3190.0010.0010.0000.0000.0000.000
179A179GLU-1-0.807-0.89159.383-0.043-0.0430.0000.0000.0000.000
180A180THR0-0.015-0.00354.5710.0010.0010.0000.0000.0000.000
181A181CYS0-0.003-0.01156.158-0.002-0.0020.0000.0000.0000.000
182A182MET0-0.0280.00252.1640.0020.0020.0000.0000.0000.000
183A183THR00.023-0.00554.103-0.002-0.0020.0000.0000.0000.000
184A184LEU0-0.024-0.00649.6730.0010.0010.0000.0000.0000.000
185A185SER00.0420.01753.6470.0000.0000.0000.0000.0000.000
186A186ALA0-0.037-0.00951.3380.0010.0010.0000.0000.0000.000
187A194GLY00.007-0.01046.0760.0010.0010.0000.0000.0000.000
188A195LEU0-0.0270.00046.196-0.004-0.0040.0000.0000.0000.000
189A196GLN0-0.029-0.01944.3310.0030.0030.0000.0000.0000.000
190A197ILE00.024-0.00146.761-0.002-0.0020.0000.0000.0000.000
191A198GLU-1-0.871-0.91942.313-0.093-0.0930.0000.0000.0000.000
192A199HIS0-0.001-0.02146.725-0.004-0.0040.0000.0000.0000.000
193A200ASN0-0.091-0.05646.9980.0030.0030.0000.0000.0000.000
194A201LYS10.8190.89049.7800.0770.0770.0000.0000.0000.000
195A202ASP-1-0.833-0.89651.628-0.060-0.0600.0000.0000.0000.000
196A203VAL0-0.0050.00649.1510.0000.0000.0000.0000.0000.000
197A204THR0-0.024-0.03651.9680.0020.0020.0000.0000.0000.000
198A205ALA0-0.0030.02448.8560.0000.0000.0000.0000.0000.000
199A206SER00.0420.02750.1840.0010.0010.0000.0000.0000.000
200A207PHE00.0200.00544.608-0.003-0.0030.0000.0000.0000.000
201A208ALA00.0790.03844.2600.0030.0030.0000.0000.0000.000
202A209LEU00.0200.00344.637-0.005-0.0050.0000.0000.0000.000
203A210LYS10.9070.95641.1650.0770.0770.0000.0000.0000.000
204A211GLN0-0.016-0.00538.946-0.007-0.0070.0000.0000.0000.000
205A212ILE00.0310.01540.195-0.004-0.0040.0000.0000.0000.000
206A213SER0-0.035-0.04541.380-0.002-0.0020.0000.0000.0000.000
207A214GLU-1-0.790-0.86637.565-0.086-0.0860.0000.0000.0000.000
208A215PHE00.0420.01236.444-0.003-0.0030.0000.0000.0000.000
209A216ALA00.0400.02236.730-0.005-0.0050.0000.0000.0000.000
210A217LYS10.7640.87036.4620.0880.0880.0000.0000.0000.000
211A218SER00.015-0.00533.159-0.003-0.0030.0000.0000.0000.000
212A219ALA0-0.011-0.00634.075-0.005-0.0050.0000.0000.0000.000
213A220PRO0-0.027-0.01432.7520.0000.0000.0000.0000.0000.000
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