FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 37R5L

Calculation Name: 3FC7-A-Xray540

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 3FC7

Chain ID: A

ChEMBL ID:

UniProt ID: Q5V4P0

Base Structure: X-ray

Registration Date: 2025-07-10

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
Remarks
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 187
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -685975.502473
FMO2-HF: Nuclear repulsion 648550.632331
FMO2-HF: Total energy -37424.870142
FMO2-MP2: Total energy -37533.671962


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:142:SER)


Summations of interaction energy for fragment #1(A:142:SER)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-4.075-1.0920.009-1.565-1.4270.001
Interaction energy analysis for fragmet #1(A:142:SER)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.084 / q_NPA : 0.053
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
4A143ASP-1-0.927-0.8253.756-3.254-2.3270.013-0.418-0.522-0.002
5A144SER0-0.073-0.1023.4910.1272.052-0.002-1.085-0.8390.003
6A144SER00.0220.0825.2110.4430.494-0.001-0.002-0.0470.000
7A145PRO0-0.044-0.0924.111-1.340-1.260-0.001-0.060-0.0190.000
8A146ASP00.1140.0025.467-0.135-0.1350.0000.0000.0000.000
9A146ASP-1-0.878-0.7946.201-0.245-0.2450.0000.0000.0000.000
10A147GLY00.025-0.0937.5050.0520.0520.0000.0000.0000.000
11A148ILE00.0870.00210.7720.1420.1420.0000.0000.0000.000
12A148ILE0-0.1140.07711.1310.0070.0070.0000.0000.0000.000
13A149VAL00.073-0.09513.272-0.068-0.0680.0000.0000.0000.000
14A149VAL0-0.0820.10216.493-0.005-0.0050.0000.0000.0000.000
15A150HIS00.114-0.07216.9750.0350.0350.0000.0000.0000.000
16A150HIS0-0.1660.04517.423-0.017-0.0170.0000.0000.0000.000
17A151LEU00.075-0.12020.108-0.017-0.0170.0000.0000.0000.000
18A151LEU0-0.0370.13220.108-0.004-0.0040.0000.0000.0000.000
19A152THR00.027-0.04322.8080.0170.0170.0000.0000.0000.000
20A152THR0-0.0980.01527.156-0.002-0.0020.0000.0000.0000.000
21A153THR00.104-0.04826.406-0.013-0.0130.0000.0000.0000.000
22A153THR0-0.0270.06828.6380.0010.0010.0000.0000.0000.000
23A154ASN00.009-0.09428.0690.0020.0020.0000.0000.0000.000
24A154ASN0-0.1030.06930.8520.0050.0050.0000.0000.0000.000
25A155GLY00.073-0.10326.1530.0010.0010.0000.0000.0000.000
26A156THR00.0550.02625.654-0.024-0.0240.0000.0000.0000.000
27A156THR0-0.0180.07327.3740.0080.0080.0000.0000.0000.000
28A157ILE00.049-0.10622.9630.0170.0170.0000.0000.0000.000
29A157ILE0-0.0810.11321.156-0.010-0.0100.0000.0000.0000.000
30A158LEU00.061-0.11823.0920.0050.0050.0000.0000.0000.000
31A158LEU0-0.0970.10423.6930.0030.0030.0000.0000.0000.000
32A159SER00.046-0.06820.8830.0090.0090.0000.0000.0000.000
33A159SER0-0.0400.04619.9540.0020.0020.0000.0000.0000.000
34A160VAL00.046-0.11617.2890.0170.0170.0000.0000.0000.000
35A160VAL0-0.0700.13816.534-0.001-0.0010.0000.0000.0000.000
36A161ASN00.115-0.06313.1570.0370.0370.0000.0000.0000.000
37A161ASN0-0.1150.07110.791-0.124-0.1240.0000.0000.0000.000
38A162PRO00.039-0.10112.782-0.020-0.0200.0000.0000.0000.000
39A163SER00.0410.0159.6760.0800.0800.0000.0000.0000.000
40A163SER0-0.0350.0568.033-0.017-0.0170.0000.0000.0000.000
41A164MET00.147-0.03910.868-0.112-0.1120.0000.0000.0000.000
42A164MET0-0.1700.08213.014-0.040-0.0400.0000.0000.0000.000
43A165ALA00.097-0.12013.2090.0350.0350.0000.0000.0000.000
44A165ALA0-0.0930.11116.2780.0100.0100.0000.0000.0000.000
45A166GLY00.003-0.09513.4700.0540.0540.0000.0000.0000.000
46A167ARG00.0880.03212.3570.0380.0380.0000.0000.0000.000
47A167ARG10.7440.9928.7771.2391.2390.0000.0000.0000.000
48A168LEU0-0.048-0.12713.1560.0370.0370.0000.0000.0000.000
49A168LEU0-0.0850.08715.3170.0080.0080.0000.0000.0000.000
50A169GLY00.000-0.10716.1980.0720.0720.0000.0000.0000.000
51A170ALA00.0670.00518.0190.0470.0470.0000.0000.0000.000
52A170ALA0-0.0680.09620.1920.0090.0090.0000.0000.0000.000
53A171ASP00.036-0.11818.419-0.082-0.0820.0000.0000.0000.000
54A171ASP-1-0.873-0.78221.221-0.372-0.3720.0000.0000.0000.000
55A172PRO00.010-0.13818.6440.0140.0140.0000.0000.0000.000
56A173ASP00.0850.00921.1240.0160.0160.0000.0000.0000.000
57A173ASP-1-0.955-0.83424.113-0.318-0.3180.0000.0000.0000.000
58A174THR0-0.046-0.10824.1390.0300.0300.0000.0000.0000.000
59A174THR0-0.0760.03923.540-0.006-0.0060.0000.0000.0000.000
60A175LEU00.095-0.08421.8110.0270.0270.0000.0000.0000.000
61A175LEU0-0.0870.09619.236-0.010-0.0100.0000.0000.0000.000
62A176VAL0-0.019-0.12623.3500.0130.0130.0000.0000.0000.000
63A176VAL0-0.0850.10822.221-0.002-0.0020.0000.0000.0000.000
64A177GLY00.059-0.10024.4530.0220.0220.0000.0000.0000.000
65A178GLN0-0.002-0.02525.9550.0260.0260.0000.0000.0000.000
66A178GLN0-0.0850.08325.0590.0100.0100.0000.0000.0000.000
67A179GLN00.158-0.07725.813-0.008-0.0080.0000.0000.0000.000
68A179GLN0-0.1090.08027.309-0.002-0.0020.0000.0000.0000.000
69A180LEU00.134-0.08022.751-0.016-0.0160.0000.0000.0000.000
70A180LEU0-0.1080.09519.394-0.003-0.0030.0000.0000.0000.000
71A181SER00.030-0.07422.885-0.030-0.0300.0000.0000.0000.000
72A181SER0-0.0280.06125.9920.0030.0030.0000.0000.0000.000
73A182ALA00.067-0.10325.2810.0100.0100.0000.0000.0000.000
74A182ALA0-0.0710.09626.8950.0040.0040.0000.0000.0000.000
75A183VAL00.005-0.08722.3050.0060.0060.0000.0000.0000.000
76A183VAL0-0.0980.08720.193-0.004-0.0040.0000.0000.0000.000
77A184MET00.123-0.05919.619-0.046-0.0460.0000.0000.0000.000
78A184MET0-0.1450.04918.703-0.019-0.0190.0000.0000.0000.000
79A185ASP00.087-0.09920.5120.0230.0230.0000.0000.0000.000
80A185ASP-1-0.904-0.83921.099-0.223-0.2230.0000.0000.0000.000
81A186SER00.047-0.08222.467-0.008-0.0080.0000.0000.0000.000
82A186SER0-0.0600.06326.6090.0060.0060.0000.0000.0000.000
83A187GLU00.067-0.08025.1140.0060.0060.0000.0000.0000.000
84A187GLU-1-0.913-0.80225.309-0.119-0.1190.0000.0000.0000.000
85A188ALA00.152-0.08820.7150.0260.0260.0000.0000.0000.000
86A188ALA0-0.0670.09919.801-0.008-0.0080.0000.0000.0000.000
87A189ALA00.058-0.12721.5130.0000.0000.0000.0000.0000.000
88A189ALA0-0.0820.10422.296-0.001-0.0010.0000.0000.0000.000
89A190ASN00.057-0.09522.5770.0020.0020.0000.0000.0000.000
90A190ASN0-0.1370.04626.609-0.004-0.0040.0000.0000.0000.000
91A191GLN00.088-0.08823.6690.0120.0120.0000.0000.0000.000
92A191GLN0-0.1270.06822.8580.0060.0060.0000.0000.0000.000
93A192ARG00.053-0.10220.4660.0290.0290.0000.0000.0000.000
94A192ARG10.7080.93714.3340.3740.3740.0000.0000.0000.000
95A193LEU00.132-0.08321.4770.0070.0070.0000.0000.0000.000
96A193LEU0-0.1040.11824.899-0.004-0.0040.0000.0000.0000.000
97A194GLU00.043-0.12124.4720.0080.0080.0000.0000.0000.000
98A194GLU-1-0.917-0.79326.358-0.075-0.0750.0000.0000.0000.000
99A195ALA00.121-0.09322.3790.0180.0180.0000.0000.0000.000
100A195ALA0-0.1000.09621.7860.0000.0000.0000.0000.0000.000
101A196GLY0-0.036-0.14122.5070.0150.0150.0000.0000.0000.000
102A197LYS00.073-0.00923.2270.0080.0080.0000.0000.0000.000
103A197LYS10.7451.00727.4440.0750.0750.0000.0000.0000.000
104A198SER00.068-0.05026.6980.0050.0050.0000.0000.0000.000
105A198SER0-0.0680.06026.7740.0060.0060.0000.0000.0000.000
106A199ALA00.095-0.08623.2970.0180.0180.0000.0000.0000.000
107A199ALA0-0.0800.07922.773-0.002-0.0020.0000.0000.0000.000
108A200VAL00.018-0.11724.7400.0140.0140.0000.0000.0000.000
109A200VAL0-0.0940.10025.216-0.001-0.0010.0000.0000.0000.000
110A201GLU00.054-0.13827.0840.0050.0050.0000.0000.0000.000
111A201GLU-1-0.934-0.82329.829-0.038-0.0380.0000.0000.0000.000
112A202ASN0-0.012-0.08228.5890.0020.0020.0000.0000.0000.000
113A202ASN0-0.1580.03627.7890.0080.0080.0000.0000.0000.000
114A203GLY00.031-0.09427.7860.0110.0110.0000.0000.0000.000
115A204THR0-0.004-0.02224.8550.0040.0040.0000.0000.0000.000
116A204THR0-0.0430.08624.0140.0070.0070.0000.0000.0000.000
117A205ALA00.154-0.06620.264-0.024-0.0240.0000.0000.0000.000
118A205ALA0-0.1190.07919.2480.0060.0060.0000.0000.0000.000
119A206THR0-0.043-0.10920.0760.0270.0270.0000.0000.0000.000
120A206THR0-0.0010.10221.554-0.001-0.0010.0000.0000.0000.000
121A207ARG00.024-0.12217.706-0.019-0.0190.0000.0000.0000.000
122A207ARG10.8161.01313.543-0.280-0.2800.0000.0000.0000.000
123A208SER00.044-0.05917.3150.0140.0140.0000.0000.0000.000
124A208SER00.0260.09819.060-0.014-0.0140.0000.0000.0000.000
125A209GLU00.067-0.08015.851-0.039-0.0390.0000.0000.0000.000
126A209GLU-1-0.907-0.80815.0620.1460.1460.0000.0000.0000.000
127A210ASP00.017-0.07915.8000.0190.0190.0000.0000.0000.000
128A210ASP-1-0.797-0.76315.959-0.312-0.3120.0000.0000.0000.000
129A211ALA00.120-0.10115.521-0.031-0.0310.0000.0000.0000.000
130A211ALA0-0.0810.11517.3060.0090.0090.0000.0000.0000.000
131A212VAL00.036-0.13715.9140.0450.0450.0000.0000.0000.000
132A212VAL0-0.0390.14716.355-0.006-0.0060.0000.0000.0000.000
133A213GLY00.027-0.08315.661-0.086-0.0860.0000.0000.0000.000
134A214GLY0-0.026-0.02416.5630.0440.0440.0000.0000.0000.000
135A215ARG00.053-0.01412.7290.0240.0240.0000.0000.0000.000
136A215ARG10.7800.9968.0851.4101.4100.0000.0000.0000.000
137A216HIS00.086-0.07411.8630.0400.0400.0000.0000.0000.000
138A216HIS0-0.0470.09412.3280.0440.0440.0000.0000.0000.000
139A217TYR00.048-0.10610.826-0.131-0.1310.0000.0000.0000.000
140A217TYR0-0.0920.09010.363-0.083-0.0830.0000.0000.0000.000
141A218HIS00.166-0.04911.0060.0550.0550.0000.0000.0000.000
142A218HIS0-0.1400.05611.0840.0830.0830.0000.0000.0000.000
143A219ASN00.050-0.09411.909-0.064-0.0640.0000.0000.0000.000
144A219ASN0-0.0720.08114.583-0.097-0.0970.0000.0000.0000.000
145A220GLN00.048-0.08014.1990.0720.0720.0000.0000.0000.000
146A220GLN0-0.0590.07612.2930.1200.1200.0000.0000.0000.000
147A221TYR00.068-0.08815.588-0.064-0.0640.0000.0000.0000.000
148A221TYR0-0.0700.10518.765-0.016-0.0160.0000.0000.0000.000
149A222ILE00.130-0.07918.7540.0400.0400.0000.0000.0000.000
150A222ILE0-0.1260.06615.6700.0050.0050.0000.0000.0000.000
151A223PRO00.079-0.05819.871-0.032-0.0320.0000.0000.0000.000
152A224VAL00.069-0.01223.1880.0160.0160.0000.0000.0000.000
153A224VAL0-0.1280.07821.610-0.003-0.0030.0000.0000.0000.000
154A225ASP00.109-0.06424.0420.0000.0000.0000.0000.0000.000
155A225ASP-1-0.986-0.85427.415-0.056-0.0560.0000.0000.0000.000
156A226SER00.066-0.05926.654-0.004-0.0040.0000.0000.0000.000
157A226SER0-0.0440.04826.5850.0010.0010.0000.0000.0000.000
158A227HIS00.122-0.03428.080-0.002-0.0020.0000.0000.0000.000
159A227HIS0-0.1090.05830.696-0.004-0.0040.0000.0000.0000.000
160A228ARG00.112-0.05031.4690.0000.0000.0000.0000.0000.000
161A228ARG10.7460.96429.8950.0440.0440.0000.0000.0000.000
162A229LYS00.052-0.08329.575-0.002-0.0020.0000.0000.0000.000
163A229LYS10.8101.01625.8600.1170.1170.0000.0000.0000.000
164A230SER00.079-0.07528.797-0.013-0.0130.0000.0000.0000.000
165A230SER0-0.0220.10631.2330.0030.0030.0000.0000.0000.000
166A231ASP00.070-0.12328.8470.0060.0060.0000.0000.0000.000
167A231ASP-1-0.902-0.80629.223-0.110-0.1100.0000.0000.0000.000
168A232THR00.053-0.04925.673-0.007-0.0070.0000.0000.0000.000
169A232THR0-0.0490.05124.766-0.002-0.0020.0000.0000.0000.000
170A233PHE00.098-0.07422.3890.0190.0190.0000.0000.0000.000
171A233PHE0-0.0560.12620.445-0.002-0.0020.0000.0000.0000.000
172A234GLN00.054-0.08217.905-0.026-0.0260.0000.0000.0000.000
173A234GLN0-0.0790.06817.071-0.028-0.0280.0000.0000.0000.000
174A235LEU00.170-0.07416.8370.0600.0600.0000.0000.0000.000
175A235LEU0-0.1330.10815.577-0.002-0.0020.0000.0000.0000.000
176A236VAL00.054-0.11112.800-0.100-0.1000.0000.0000.0000.000
177A236VAL0-0.1270.08510.7850.0060.0060.0000.0000.0000.000
178A237SER00.124-0.06112.0510.1400.1400.0000.0000.0000.000
179A237SER0-0.0970.04612.577-0.051-0.0510.0000.0000.0000.000
180A238ARG00.123-0.0778.038-0.458-0.4580.0000.0000.0000.000
181A238ARG10.7270.9956.372-0.286-0.2860.0000.0000.0000.000
182A239ASP00.128-0.0727.2140.4370.4370.0000.0000.0000.000
183A239ASP-1-0.838-0.7536.250-1.474-1.4740.0000.0000.0000.000
184A240ILE0-0.011-0.1206.449-0.116-0.1160.0000.0000.0000.000
185A240ILE0-0.1000.0928.3700.0620.0620.0000.0000.0000.000
186A241THR0-0.084-0.1798.5560.2250.2250.0000.0000.0000.000
187A241THR00.0210.0389.2330.0450.0450.0000.0000.0000.000