Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: 39G7L

Calculation Name: 1UAN-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1UAN

Chain ID: A

ChEMBL ID:

UniProt ID: Q84BR2

Base Structure: X-ray

Registration Date: 2023-06-26

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 220
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 22 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2600705.006932
FMO2-HF: Nuclear repulsion 2517195.891282
FMO2-HF: Total energy -83509.11565
FMO2-MP2: Total energy -83757.199577


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:MET)


Summations of interaction energy for fragment #1(A:1:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-23.661-25.04630.13-9.683-19.061-0.075
Interaction energy analysis for fragmet #1(A:1:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.103 / q_NPA : -0.040
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3ASP-1-0.820-0.9342.186-10.166-13.90814.736-3.474-7.520-0.037
4A4LEU0-0.034-0.0212.8612.2951.2120.1291.295-0.3410.000
5A5LEU0-0.0030.0086.560-0.097-0.0970.0000.0000.0000.000
6A6VAL0-0.0140.0028.9370.2260.2260.0000.0000.0000.000
7A7VAL0-0.001-0.00811.752-0.029-0.0290.0000.0000.0000.000
8A8ALA00.0560.01713.9760.0580.0580.0000.0000.0000.000
9A9PRO0-0.026-0.00517.4610.0080.0080.0000.0000.0000.000
10A10HIS00.0130.00320.5270.0350.0350.0000.0000.0000.000
11A11PRO0-0.001-0.00119.895-0.027-0.0270.0000.0000.0000.000
12A12ASP-1-0.901-0.94420.670-0.275-0.2750.0000.0000.0000.000
13A13ASP-1-0.789-0.88520.848-0.368-0.3680.0000.0000.0000.000
14A14GLY00.0340.00217.394-0.008-0.0080.0000.0000.0000.000
15A15GLU-1-0.733-0.86017.985-0.567-0.5670.0000.0000.0000.000
16A16LEU0-0.039-0.02019.4950.0150.0150.0000.0000.0000.000
17A17GLY0-0.028-0.01920.1290.0240.0240.0000.0000.0000.000
18A18CYS0-0.043-0.01415.0520.0020.0020.0000.0000.0000.000
19A19GLY00.0620.03015.899-0.063-0.0630.0000.0000.0000.000
20A20GLY00.005-0.00116.784-0.030-0.0300.0000.0000.0000.000
21A21THR0-0.044-0.06512.714-0.009-0.0090.0000.0000.0000.000
22A22LEU0-0.015-0.00510.895-0.106-0.1060.0000.0000.0000.000
23A23ALA00.0010.01012.374-0.090-0.0900.0000.0000.0000.000
24A24ARG10.7710.89413.6510.5780.5780.0000.0000.0000.000
25A25ALA00.008-0.0068.752-0.004-0.0040.0000.0000.0000.000
26A26LYS10.9460.9969.7110.7830.7830.0000.0000.0000.000
27A27ALA0-0.049-0.02211.1190.0390.0390.0000.0000.0000.000
28A28GLU-1-0.947-0.98110.592-0.649-0.6490.0000.0000.0000.000
29A29GLY0-0.031-0.0129.059-0.012-0.0120.0000.0000.0000.000
30A30LEU0-0.081-0.0365.363-0.219-0.2190.0000.0000.0000.000
31A31SER0-0.027-0.0063.992-0.0340.3130.036-0.068-0.3150.000
32A32THR00.001-0.0225.393-0.484-0.4840.0000.0000.0000.000
33A33GLY00.0410.0048.0580.0310.0310.0000.0000.0000.000
34A34ILE0-0.0110.0059.9560.0510.0510.0000.0000.0000.000
35A35LEU0-0.027-0.02010.852-0.008-0.0080.0000.0000.0000.000
36A36ASP-1-0.789-0.88812.767-0.507-0.5070.0000.0000.0000.000
37A37LEU0-0.025-0.03415.6930.0200.0200.0000.0000.0000.000
38A38THR00.0190.03318.0770.0420.0420.0000.0000.0000.000
39A39ARG10.9900.97118.6260.2420.2420.0000.0000.0000.000
40A40GLY00.0160.00722.496-0.001-0.0010.0000.0000.0000.000
41A41GLU-1-0.835-0.92125.221-0.188-0.1880.0000.0000.0000.000
42A42MET0-0.075-0.01827.9700.0200.0200.0000.0000.0000.000
43A43GLY0-0.020-0.01329.1960.0090.0090.0000.0000.0000.000
44A44SER0-0.101-0.02727.623-0.003-0.0030.0000.0000.0000.000
45A45LYS10.9360.96629.6770.1860.1860.0000.0000.0000.000
46A46GLY00.0110.00930.894-0.011-0.0110.0000.0000.0000.000
47A47THR0-0.056-0.04931.246-0.001-0.0010.0000.0000.0000.000
48A48PRO00.020-0.01027.019-0.013-0.0130.0000.0000.0000.000
49A49GLU-1-0.860-0.93126.153-0.179-0.1790.0000.0000.0000.000
50A50GLU-1-0.870-0.91726.743-0.176-0.1760.0000.0000.0000.000
51A51ARG10.9760.99824.4560.2620.2620.0000.0000.0000.000
52A52GLU-1-0.958-0.98521.533-0.275-0.2750.0000.0000.0000.000
53A53LYS10.9000.95122.3220.1580.1580.0000.0000.0000.000
54A54GLU-1-0.861-0.89123.869-0.267-0.2670.0000.0000.0000.000
55A55VAL00.0230.01818.357-0.031-0.0310.0000.0000.0000.000
56A56ALA0-0.0110.01319.128-0.061-0.0610.0000.0000.0000.000
57A57GLU-1-0.777-0.87519.977-0.359-0.3590.0000.0000.0000.000
58A58ALA0-0.001-0.00420.514-0.021-0.0210.0000.0000.0000.000
59A59SER0-0.013-0.03815.710-0.072-0.0720.0000.0000.0000.000
60A60ARG10.8020.89716.6750.2910.2910.0000.0000.0000.000
61A61ILE0-0.067-0.02218.427-0.019-0.0190.0000.0000.0000.000
62A62LEU0-0.031-0.02815.4210.0030.0030.0000.0000.0000.000
63A63GLY0-0.036-0.01114.568-0.067-0.0670.0000.0000.0000.000
64A64LEU0-0.062-0.02511.828-0.098-0.0980.0000.0000.0000.000
65A65ASP-1-0.821-0.8827.813-1.311-1.3110.0000.0000.0000.000
66A66PHE0-0.061-0.0387.3310.0790.0790.0000.0000.0000.000
67A67ARG10.7770.8629.4820.7020.7020.0000.0000.0000.000
68A68GLY0-0.0130.00212.1510.0690.0690.0000.0000.0000.000
69A69ASN0-0.038-0.04212.9840.0380.0380.0000.0000.0000.000
70A70LEU0-0.059-0.02513.0380.0240.0240.0000.0000.0000.000
71A71GLY0-0.042-0.00216.7440.0460.0460.0000.0000.0000.000
72A72PHE0-0.024-0.02317.8240.0310.0310.0000.0000.0000.000
73A73PRO00.0150.00222.053-0.016-0.0160.0000.0000.0000.000
74A74ASP-1-0.831-0.92025.569-0.219-0.2190.0000.0000.0000.000
75A75GLY0-0.018-0.03226.4360.0180.0180.0000.0000.0000.000
76A76GLY0-0.048-0.02226.9240.0160.0160.0000.0000.0000.000
77A77LEU0-0.044-0.00521.2920.0020.0020.0000.0000.0000.000
78A78ALA00.004-0.02623.7480.0110.0110.0000.0000.0000.000
79A79ASP-1-0.813-0.87322.265-0.101-0.1010.0000.0000.0000.000
80A80VAL00.0030.00123.7120.0210.0210.0000.0000.0000.000
81A81PRO00.010-0.01322.769-0.008-0.0080.0000.0000.0000.000
82A82GLU-1-0.897-0.95421.593-0.062-0.0620.0000.0000.0000.000
83A83GLN00.0700.03720.146-0.017-0.0170.0000.0000.0000.000
84A84ARG10.8620.90018.3180.0360.0360.0000.0000.0000.000
85A85LEU0-0.027-0.01716.908-0.002-0.0020.0000.0000.0000.000
86A86LYS10.9410.98616.0600.0690.0690.0000.0000.0000.000
87A87LEU00.0300.02612.640-0.029-0.0290.0000.0000.0000.000
88A88ALA00.007-0.00412.294-0.050-0.0500.0000.0000.0000.000
89A89GLN0-0.019-0.02611.2790.0270.0270.0000.0000.0000.000
90A90ALA0-0.028-0.0199.9520.0920.0920.0000.0000.0000.000
91A91LEU00.0230.0087.807-0.193-0.1930.0000.0000.0000.000
92A92ARG10.8450.9226.549-0.536-0.5360.0000.0000.0000.000
93A93ARG10.8960.9696.6730.9160.9160.0000.0000.0000.000
94A94LEU0-0.021-0.0233.8130.8261.2000.000-0.083-0.2910.000
95A95ARG10.9070.9752.182-14.286-11.1795.317-4.384-4.040-0.019
96A96PRO00.0240.0222.524-3.230-1.3451.996-1.645-2.235-0.022
97A97ARG10.9440.9702.0421.210-1.2197.917-1.317-4.1720.003
98A98VAL0-0.011-0.0035.5150.5000.5000.0000.0000.0000.000
99A99VAL00.0260.0107.964-0.277-0.2770.0000.0000.0000.000
100A100PHE0-0.030-0.01210.6580.1330.1330.0000.0000.0000.000
101A101ALA00.0220.00513.748-0.039-0.0390.0000.0000.0000.000
102A102PRO00.0260.01816.4560.0210.0210.0000.0000.0000.000
103A103LEU0-0.0100.00020.1790.0200.0200.0000.0000.0000.000
104A104GLU-1-0.788-0.88122.749-0.148-0.1480.0000.0000.0000.000
105A105ALA0-0.0400.00624.9670.0120.0120.0000.0000.0000.000
106A106ASP-1-0.744-0.89426.802-0.249-0.2490.0000.0000.0000.000
107A107ARG10.8930.95428.9830.1720.1720.0000.0000.0000.000
108A108HIS0-0.013-0.00927.5570.0140.0140.0000.0000.0000.000
109A109PRO00.0780.02627.593-0.012-0.0120.0000.0000.0000.000
110A110ASP-1-0.730-0.87024.353-0.202-0.2020.0000.0000.0000.000
111A111HIS10.7710.87922.9300.2670.2670.0000.0000.0000.000
112A112THR0-0.003-0.00922.723-0.014-0.0140.0000.0000.0000.000
113A113ALA00.0090.00523.7230.0020.0020.0000.0000.0000.000
114A114ALA00.012-0.00119.054-0.002-0.0020.0000.0000.0000.000
115A115SER0-0.058-0.01218.715-0.011-0.0110.0000.0000.0000.000
116A116ARG10.8620.89419.4200.1330.1330.0000.0000.0000.000
117A117LEU0-0.0190.00018.0890.0160.0160.0000.0000.0000.000
118A118ALA00.0000.00914.9950.0110.0110.0000.0000.0000.000
119A119VAL00.0100.00615.3350.0170.0170.0000.0000.0000.000
120A120ALA0-0.008-0.00217.1720.0380.0380.0000.0000.0000.000
121A121ALA00.005-0.00513.9820.0500.0500.0000.0000.0000.000
122A122VAL00.0350.01611.7540.0580.0580.0000.0000.0000.000
123A123HIS0-0.039-0.01513.4890.0910.0910.0000.0000.0000.000
124A124LEU0-0.012-0.02816.0150.0610.0610.0000.0000.0000.000
125A125ALA00.0190.02110.6280.0710.0710.0000.0000.0000.000
126A126GLY00.0510.03512.4110.1580.1580.0000.0000.0000.000
127A127LEU0-0.072-0.03313.5760.0420.0420.0000.0000.0000.000
128A128ARG10.9560.96016.763-0.311-0.3110.0000.0000.0000.000
129A129LYS10.9280.94317.955-0.205-0.2050.0000.0000.0000.000
130A130ALA00.0370.05416.923-0.033-0.0330.0000.0000.0000.000
131A131PRO0-0.036-0.00318.5980.0410.0410.0000.0000.0000.000
132A132LEU0-0.032-0.02813.869-0.041-0.0410.0000.0000.0000.000
133A133GLU-1-0.881-0.93314.3200.3500.3500.0000.0000.0000.000
134A134GLY0-0.025-0.00711.5560.0410.0410.0000.0000.0000.000
135A135GLU-1-0.924-0.9739.9520.8770.8770.0000.0000.0000.000
136A136PRO0-0.046-0.02210.5580.0340.0340.0000.0000.0000.000
137A137PHE0-0.024-0.0094.7570.2920.448-0.001-0.007-0.1470.000
138A138ARG10.9200.9539.019-0.578-0.5780.0000.0000.0000.000
139A139VAL00.0220.0228.0400.0480.0480.0000.0000.0000.000
140A140GLU-1-0.960-0.9628.350-0.180-0.1800.0000.0000.0000.000
141A141ARG10.9070.95310.0260.5490.5490.0000.0000.0000.000
142A142LEU00.0180.02011.008-0.138-0.1380.0000.0000.0000.000
143A143PHE0-0.030-0.01812.2580.0660.0660.0000.0000.0000.000
144A144PHE0-0.011-0.02015.725-0.040-0.0400.0000.0000.0000.000
145A145TYR00.0140.00517.033-0.006-0.0060.0000.0000.0000.000
146A146PRO0-0.0010.00519.7250.0180.0180.0000.0000.0000.000
147A147GLY00.0350.02723.287-0.022-0.0220.0000.0000.0000.000
148A148ASN0-0.098-0.06225.4980.0150.0150.0000.0000.0000.000
149A149HIS0-0.0040.01228.6880.0150.0150.0000.0000.0000.000
150A150PRO0-0.002-0.01028.773-0.014-0.0140.0000.0000.0000.000
151A151PHE00.0150.00725.617-0.002-0.0020.0000.0000.0000.000
152A152ALA00.0220.00427.6140.0050.0050.0000.0000.0000.000
153A153PRO0-0.056-0.00823.773-0.007-0.0070.0000.0000.0000.000
154A154SER00.0180.00520.8370.0130.0130.0000.0000.0000.000
155A155PHE0-0.037-0.01415.4030.0150.0150.0000.0000.0000.000
156A156LEU0-0.009-0.00420.597-0.004-0.0040.0000.0000.0000.000
157A157VAL00.0180.01815.3200.0000.0000.0000.0000.0000.000
158A158LYS10.9560.98418.3420.3130.3130.0000.0000.0000.000
159A159ILE00.0370.00717.645-0.039-0.0390.0000.0000.0000.000
160A160SER0-0.017-0.02120.161-0.001-0.0010.0000.0000.0000.000
161A161ALA00.0040.01120.7640.0140.0140.0000.0000.0000.000
162A162PHE00.0280.01317.187-0.007-0.0070.0000.0000.0000.000
163A163ILE0-0.049-0.00920.624-0.016-0.0160.0000.0000.0000.000
164A164ASP-1-0.824-0.92323.440-0.276-0.2760.0000.0000.0000.000
165A165GLN0-0.034-0.02617.3590.0160.0160.0000.0000.0000.000
166A166TRP0-0.089-0.02520.2990.0100.0100.0000.0000.0000.000
167A167GLU-1-0.874-0.96121.434-0.251-0.2510.0000.0000.0000.000
168A168ALA0-0.0080.00023.9160.0140.0140.0000.0000.0000.000
169A169ALA0-0.008-0.00720.5300.0080.0080.0000.0000.0000.000
170A170VAL0-0.004-0.00522.4790.0060.0060.0000.0000.0000.000
171A171LEU0-0.026-0.02324.5370.0190.0190.0000.0000.0000.000
172A172ALA0-0.0120.01224.3930.0210.0210.0000.0000.0000.000
173A173TYR0-0.017-0.01520.5960.0200.0200.0000.0000.0000.000
174A174ARG10.9740.97927.2510.2260.2260.0000.0000.0000.000
175A175SER0-0.047-0.04429.4290.0140.0140.0000.0000.0000.000
176A176GLN0-0.030-0.02327.9190.0200.0200.0000.0000.0000.000
177A177PHE0-0.028-0.02726.3500.0140.0140.0000.0000.0000.000
178A178THR0-0.065-0.01631.6140.0070.0070.0000.0000.0000.000
179A186VAL0-0.018-0.01428.7470.0060.0060.0000.0000.0000.000
180A187GLY00.0830.04231.9770.0020.0020.0000.0000.0000.000
181A188PRO00.0650.02732.081-0.011-0.0110.0000.0000.0000.000
182A189LYS10.8990.93133.3910.1530.1530.0000.0000.0000.000
183A190GLY0-0.0030.00031.598-0.001-0.0010.0000.0000.0000.000
184A191VAL00.0680.03027.766-0.009-0.0090.0000.0000.0000.000
185A192GLU-1-0.859-0.91529.268-0.179-0.1790.0000.0000.0000.000
186A193ALA00.0170.00831.500-0.001-0.0010.0000.0000.0000.000
187A194ARG10.9170.96624.8580.2810.2810.0000.0000.0000.000
188A195LYS10.9700.99726.7780.2270.2270.0000.0000.0000.000
189A196ALA00.0160.00028.139-0.001-0.0010.0000.0000.0000.000
190A197MET0-0.0220.00425.280-0.004-0.0040.0000.0000.0000.000
191A198ARG10.8440.92120.7290.3930.3930.0000.0000.0000.000
192A199ARG10.8950.96526.0530.2000.2000.0000.0000.0000.000
193A200TYR0-0.031-0.00528.9830.0090.0090.0000.0000.0000.000
194A201TRP00.0450.00025.8110.0060.0060.0000.0000.0000.000
195A202GLY00.0170.00325.8820.0000.0000.0000.0000.0000.000
196A203ASN00.006-0.00426.7270.0050.0050.0000.0000.0000.000
197A204TYR0-0.034-0.01929.0030.0130.0130.0000.0000.0000.000
198A205LEU0-0.042-0.02325.0860.0070.0070.0000.0000.0000.000
199A206GLY0-0.0100.01627.521-0.004-0.0040.0000.0000.0000.000
200A207VAL0-0.095-0.04623.972-0.009-0.0090.0000.0000.0000.000
201A208ASP-1-0.902-0.95026.964-0.219-0.2190.0000.0000.0000.000
202A209TYR00.017-0.01824.2360.0090.0090.0000.0000.0000.000
203A210ALA0-0.010-0.00921.818-0.018-0.0180.0000.0000.0000.000
204A211GLU-1-0.741-0.82917.828-0.516-0.5160.0000.0000.0000.000
205A212PRO0-0.0040.00020.000-0.014-0.0140.0000.0000.0000.000
206A213PHE00.0270.00816.576-0.026-0.0260.0000.0000.0000.000
207A214VAL00.0130.00919.7040.0350.0350.0000.0000.0000.000
208A215SER0-0.008-0.02418.296-0.044-0.0440.0000.0000.0000.000
209A216PRO0-0.0140.00019.2000.0200.0200.0000.0000.0000.000
210A217LEU0-0.0110.00218.4130.0290.0290.0000.0000.0000.000
211A218PRO00.0400.02620.681-0.029-0.0290.0000.0000.0000.000
212A219VAL00.0140.00117.3100.0020.0020.0000.0000.0000.000
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215A222VAL00.0240.00518.1990.0300.0300.0000.0000.0000.000
216A223PRO00.012-0.00120.732-0.018-0.0180.0000.0000.0000.000
217A224TRP00.0430.02622.527-0.001-0.0010.0000.0000.0000.000
218A225SER0-0.086-0.03418.807-0.011-0.0110.0000.0000.0000.000
219A226ARG10.9750.97419.3160.2400.2400.0000.0000.0000.000
220A227ALA00.0500.03817.823-0.030-0.0300.0000.0000.0000.000