FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-05-02

All entries: 37386

Number of unique PDB entries: 7781

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FMODB ID: 39Q1L

Calculation Name: 3QLL-A-Xray372

Preferred Name:
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Target Type:
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Ligand Name:
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ligand 3-letter code:
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PDB ID: 3QLL

Chain ID: A

ChEMBL ID:
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UniProt ID: Q9ZC38

Base Structure: X-ray

Registration Date: 2023-06-21

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 217
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2406730.958526
FMO2-HF: Nuclear repulsion 2326068.004843
FMO2-HF: Total energy -80662.953683
FMO2-MP2: Total energy -80898.865629


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:5:ASP)


Summations of interaction energy for fragment #1(A:5:ASP)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
33.7733.77229.255-14.433-14.8250.145
Interaction energy analysis for fragmet #1(A:5:ASP)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : -1 / q_Mulliken : -0.797 / q_NPA : -0.895
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A7TYR0-0.036-0.0221.892-31.445-28.53610.437-6.755-6.5910.067
4A8GLN0-0.080-0.0451.803-46.983-50.42118.803-7.447-7.9180.077
5A9THR0-0.094-0.0294.056-13.361-12.9670.016-0.211-0.2000.001
6A10ARG10.8320.8737.157-26.980-26.9800.0000.0000.0000.000
7A11SER0-0.014-0.03710.238-2.068-2.0680.0000.0000.0000.000
8A12TRP00.0170.0027.850-0.886-0.8860.0000.0000.0000.000
9A13LEU0-0.018-0.01113.551-1.242-1.2420.0000.0000.0000.000
10A14PHE00.0260.01916.5040.1410.1410.0000.0000.0000.000
11A15THR0-0.033-0.02418.532-0.696-0.6960.0000.0000.0000.000
12A16PRO00.0870.05620.6670.2650.2650.0000.0000.0000.000
13A17ALA00.0070.02022.4730.0000.0000.0000.0000.0000.000
14A18THR0-0.043-0.01923.404-0.252-0.2520.0000.0000.0000.000
15A19ARG10.8330.91419.438-13.443-13.4430.0000.0000.0000.000
16A30GLY0-0.018-0.02215.802-0.305-0.3050.0000.0000.0000.000
17A31ALA0-0.006-0.00713.9280.5370.5370.0000.0000.0000.000
18A32ASP-1-0.755-0.8318.34827.68227.6820.0000.0000.0000.000
19A33VAL00.0090.0077.6591.1951.1950.0000.0000.0000.000
20A34ALA0-0.034-0.00710.381-1.320-1.3200.0000.0000.0000.000
21A35ILE00.0220.00913.4450.3200.3200.0000.0000.0000.000
22A36ILE0-0.015-0.00415.230-1.066-1.0660.0000.0000.0000.000
23A37ASP-1-0.761-0.84218.07913.84413.8440.0000.0000.0000.000
24A38LEU00.0130.00520.689-0.589-0.5890.0000.0000.0000.000
25A39GLU-1-0.812-0.90923.27912.23712.2370.0000.0000.0000.000
26A40ASP-1-0.782-0.87925.02711.82411.8240.0000.0000.0000.000
27A41SER0-0.112-0.07323.660-0.437-0.4370.0000.0000.0000.000
28A42VAL0-0.041-0.01325.385-0.248-0.2480.0000.0000.0000.000
29A43SER0-0.007-0.04228.140-0.140-0.1400.0000.0000.0000.000
30A44GLN00.046-0.00531.1850.3120.3120.0000.0000.0000.000
31A45ALA0-0.037-0.01433.062-0.064-0.0640.0000.0000.0000.000
32A46ASP-1-0.880-0.90530.1229.2279.2270.0000.0000.0000.000
33A47LYS10.7900.92227.319-10.603-10.6030.0000.0000.0000.000
34A48GLU-1-0.766-0.86227.97110.05010.0500.0000.0000.0000.000
35A49GLN00.0130.00928.9820.2570.2570.0000.0000.0000.000
36A50ALA0-0.010-0.01725.4800.1510.1510.0000.0000.0000.000
37A51ARG10.7950.87324.366-10.101-10.1010.0000.0000.0000.000
38A52GLN0-0.033-0.03724.3000.2330.2330.0000.0000.0000.000
39A53LYS10.8470.92524.885-9.816-9.8160.0000.0000.0000.000
40A54ALA0-0.009-0.01020.3510.2390.2390.0000.0000.0000.000
41A55ILE0-0.0320.00320.0360.5150.5150.0000.0000.0000.000
42A56SER0-0.086-0.03020.9710.0260.0260.0000.0000.0000.000
43A66LEU0-0.014-0.0099.404-0.238-0.2380.0000.0000.0000.000
44A67PRO0-0.022-0.0046.098-0.913-0.9130.0000.0000.0000.000
45A68LEU0-0.025-0.0248.317-0.857-0.8570.0000.0000.0000.000
46A69ALA00.028-0.00310.3971.1411.1410.0000.0000.0000.000
47A70LEU0-0.015-0.00512.457-1.119-1.1190.0000.0000.0000.000
48A71ARG10.7220.83516.026-13.185-13.1850.0000.0000.0000.000
49A72ILE00.0060.00318.436-0.700-0.7000.0000.0000.0000.000
50A73ASN0-0.032-0.05321.131-0.079-0.0790.0000.0000.0000.000
51A74GLY00.0670.04123.8600.2310.2310.0000.0000.0000.000
52A75LEU00.0110.00122.351-0.439-0.4390.0000.0000.0000.000
53A76ASP-1-0.933-0.95725.93410.77910.7790.0000.0000.0000.000
54A77THR0-0.042-0.03527.587-0.520-0.5200.0000.0000.0000.000
55A78ARG10.8580.89129.150-8.636-8.6360.0000.0000.0000.000
56A79ALA0-0.0020.00028.1130.0240.0240.0000.0000.0000.000
57A80GLY00.0870.06024.9450.1620.1620.0000.0000.0000.000
58A81ILE0-0.038-0.02424.9840.2670.2670.0000.0000.0000.000
59A82GLU-1-0.781-0.87827.0219.4709.4700.0000.0000.0000.000
60A83ASP-1-0.757-0.86122.89511.79811.7980.0000.0000.0000.000
61A84ILE0-0.004-0.00221.6530.3070.3070.0000.0000.0000.000
62A85HIS0-0.070-0.04023.3900.1870.1870.0000.0000.0000.000
63A86ALA0-0.003-0.00724.804-0.043-0.0430.0000.0000.0000.000
64A87LEU0-0.021-0.01418.2300.1050.1050.0000.0000.0000.000
65A88LEU0-0.046-0.01820.9840.1210.1210.0000.0000.0000.000
66A89GLU-1-0.933-0.94723.0879.5119.5110.0000.0000.0000.000
67A90CYS0-0.051-0.02823.327-0.284-0.2840.0000.0000.0000.000
68A91GLY0-0.0020.00921.8480.1850.1850.0000.0000.0000.000
69A92SER0-0.057-0.02118.4050.5620.5620.0000.0000.0000.000
70A93LEU0-0.006-0.01615.017-0.277-0.2770.0000.0000.0000.000
71A94PRO0-0.0330.00112.2980.0890.0890.0000.0000.0000.000
72A95ASP-1-0.789-0.8877.08324.20924.2090.0000.0000.0000.000
73A96TYR0-0.020-0.0113.7103.7233.860-0.001-0.020-0.1160.000
74A97LEU00.0150.01010.409-1.325-1.3250.0000.0000.0000.000
75A98VAL0-0.026-0.02613.4060.9000.9000.0000.0000.0000.000
76A99LEU0-0.010-0.01515.546-1.136-1.1360.0000.0000.0000.000
77A100PRO00.0530.02418.6100.5460.5460.0000.0000.0000.000
78A101LYS10.8580.90621.248-11.409-11.4090.0000.0000.0000.000
79A102THR0-0.0160.00018.620-0.002-0.0020.0000.0000.0000.000
80A103GLU-1-0.752-0.83821.61711.33711.3370.0000.0000.0000.000
81A104SER0-0.024-0.02023.193-0.333-0.3330.0000.0000.0000.000
82A105ALA00.0720.03420.4120.3310.3310.0000.0000.0000.000
83A106ALA0-0.006-0.01020.7510.4250.4250.0000.0000.0000.000
84A107HIS0-0.017-0.00521.562-0.246-0.2460.0000.0000.0000.000
85A108LEU00.0730.03715.557-0.019-0.0190.0000.0000.0000.000
86A109GLN0-0.013-0.02318.395-0.637-0.6370.0000.0000.0000.000
87A110ILE0-0.045-0.01520.063-0.275-0.2750.0000.0000.0000.000
88A111LEU00.0700.03017.919-0.268-0.2680.0000.0000.0000.000
89A112ASP-1-0.837-0.88916.31718.07218.0720.0000.0000.0000.000
90A113ARG10.8690.91817.729-13.470-13.4700.0000.0000.0000.000
91A114LEU0-0.028-0.01621.119-0.354-0.3540.0000.0000.0000.000
92A115MET00.0010.03015.050-0.266-0.2660.0000.0000.0000.000
93A116MET0-0.063-0.02317.1860.6270.6270.0000.0000.0000.000
94A117PHE0-0.041-0.02419.505-0.440-0.4400.0000.0000.0000.000
95A118ALA00.0360.01419.3190.2610.2610.0000.0000.0000.000
96A119GLY00.018-0.00115.4960.1830.1830.0000.0000.0000.000
97A120SER0-0.036-0.03914.2020.1680.1680.0000.0000.0000.000
98A121ASP-1-0.914-0.9319.61021.62121.6210.0000.0000.0000.000
99A122THR0-0.054-0.0249.4971.7881.7880.0000.0000.0000.000
100A123ARG10.8460.9086.017-33.886-33.8860.0000.0000.0000.000
101A124LEU0-0.019-0.01510.236-1.643-1.6430.0000.0000.0000.000
102A125ILE00.0010.0038.9342.4792.4790.0000.0000.0000.000
103A126GLY00.0310.02112.745-1.601-1.6010.0000.0000.0000.000
104A127ILE0-0.029-0.00115.5661.1171.1170.0000.0000.0000.000
105A128ILE0-0.041-0.02017.743-0.881-0.8810.0000.0000.0000.000
106A129GLU-1-0.820-0.92820.18214.26814.2680.0000.0000.0000.000
107A130SER00.020-0.00523.423-0.391-0.3910.0000.0000.0000.000
108A131VAL00.0400.00225.5110.4830.4830.0000.0000.0000.000
109A132ARG10.8040.89127.511-10.589-10.5890.0000.0000.0000.000
110A133GLY00.0650.03323.3460.1800.1800.0000.0000.0000.000
111A134LEU0-0.020-0.01222.4850.5450.5450.0000.0000.0000.000
112A135ASN0-0.061-0.04423.6890.1890.1890.0000.0000.0000.000
113A136ALA00.0060.01923.820-0.186-0.1860.0000.0000.0000.000
114A137VAL00.0480.03718.0970.4760.4760.0000.0000.0000.000
115A138GLU-1-0.766-0.85118.49015.23415.2340.0000.0000.0000.000
116A139SER0-0.093-0.06118.8130.3850.3850.0000.0000.0000.000
117A140ILE0-0.035-0.02216.9770.2310.2310.0000.0000.0000.000
118A141ALA00.0190.00214.4120.7080.7080.0000.0000.0000.000
119A142ALA00.0210.02714.1971.2431.2430.0000.0000.0000.000
120A143ALA0-0.069-0.01716.692-0.501-0.5010.0000.0000.0000.000
121A144THR0-0.012-0.04714.489-0.592-0.5920.0000.0000.0000.000
122A145PRO00.0300.02012.2861.2001.2000.0000.0000.0000.000
123A146LYS10.8700.95410.535-15.813-15.8130.0000.0000.0000.000
124A147LEU0-0.048-0.00210.6900.5480.5480.0000.0000.0000.000
125A148ALA0-0.026-0.0146.4242.0432.0430.0000.0000.0000.000
126A149GLY00.0740.0347.1444.8334.8330.0000.0000.0000.000
127A150LEU0-0.059-0.0269.750-2.546-2.5460.0000.0000.0000.000
128A151ILE00.0280.02013.3370.6060.6060.0000.0000.0000.000
129A152PHE00.0150.00215.337-1.148-1.1480.0000.0000.0000.000
130A153GLY00.0550.01718.4760.0180.0180.0000.0000.0000.000
131A154ALA0-0.030-0.02821.628-0.664-0.6640.0000.0000.0000.000
132A155ALA0-0.0050.00123.784-0.515-0.5150.0000.0000.0000.000
133A156ASP-1-0.842-0.92625.77311.19111.1910.0000.0000.0000.000
134A157MET0-0.044-0.00123.103-0.469-0.4690.0000.0000.0000.000
135A158ALA0-0.037-0.01526.442-0.348-0.3480.0000.0000.0000.000
136A159ALA00.0070.00929.282-0.428-0.4280.0000.0000.0000.000
137A160ASP-1-0.870-0.93429.11010.35610.3560.0000.0000.0000.000
138A161ILE0-0.064-0.03627.765-0.213-0.2130.0000.0000.0000.000
139A162GLY0-0.0260.01031.846-0.319-0.3190.0000.0000.0000.000
140A163ALA0-0.073-0.04331.698-0.276-0.2760.0000.0000.0000.000
141A164ALA00.0100.00232.7430.0580.0580.0000.0000.0000.000
142A165SER00.025-0.00727.9240.0700.0700.0000.0000.0000.000
143A166THR0-0.022-0.00527.8470.3260.3260.0000.0000.0000.000
144A167TRP00.0380.01020.4870.0180.0180.0000.0000.0000.000
145A168GLU-1-0.801-0.90526.76611.38511.3850.0000.0000.0000.000
146A169PRO0-0.046-0.02429.1410.0380.0380.0000.0000.0000.000
147A170LEU00.0050.01524.7270.0990.0990.0000.0000.0000.000
148A171ALA00.0000.01924.2690.6200.6200.0000.0000.0000.000
149A172LEU00.0160.00323.6610.5210.5210.0000.0000.0000.000
150A173ALA00.001-0.00523.5590.3770.3770.0000.0000.0000.000
151A174ARG10.8070.88119.912-14.430-14.4300.0000.0000.0000.000
152A175ALA00.0400.01818.9680.9260.9260.0000.0000.0000.000
153A176ARG10.7480.84219.528-12.589-12.5890.0000.0000.0000.000
154A177LEU00.0310.01515.8580.3170.3170.0000.0000.0000.000
155A178VAL00.0450.02814.1251.1901.1900.0000.0000.0000.000
156A179SER0-0.041-0.00914.7981.3171.3170.0000.0000.0000.000
157A180ALA00.000-0.00516.3370.5290.5290.0000.0000.0000.000
158A181CYS0-0.045-0.01611.4010.3080.3080.0000.0000.0000.000
159A182ALA00.0430.02011.6801.8491.8490.0000.0000.0000.000
160A183MET0-0.080-0.03712.8220.4790.4790.0000.0000.0000.000
161A184ASN0-0.066-0.04812.923-1.490-1.4900.0000.0000.0000.000
162A185GLY0-0.0210.0089.5630.9770.9770.0000.0000.0000.000
163A186ILE0-0.0090.0046.9965.0495.0490.0000.0000.0000.000
164A187PRO00.0100.0065.356-3.634-3.6340.0000.0000.0000.000
165A188ALA00.0160.0127.997-2.510-2.5100.0000.0000.0000.000
166A189ILE0-0.023-0.0149.6890.9670.9670.0000.0000.0000.000
167A190ASP-1-0.729-0.86212.65815.04415.0440.0000.0000.0000.000
168A191ALA00.0320.01516.2300.3420.3420.0000.0000.0000.000
169A192PRO0-0.0480.00519.1910.2780.2780.0000.0000.0000.000
170A193PHE00.0000.00120.702-0.579-0.5790.0000.0000.0000.000
171A194PHE00.0220.00223.488-0.035-0.0350.0000.0000.0000.000
172A195ASP-1-0.811-0.89326.76210.08410.0840.0000.0000.0000.000
173A196VAL0-0.053-0.04926.3210.5540.5540.0000.0000.0000.000
174A197HIS0-0.053-0.01628.1820.0270.0270.0000.0000.0000.000
175A198ASP-1-0.845-0.91829.81510.76910.7690.0000.0000.0000.000
176A199VAL00.003-0.01125.3660.4410.4410.0000.0000.0000.000
177A200SER00.0080.00826.0000.3650.3650.0000.0000.0000.000
178A201GLY00.001-0.00526.9190.2770.2770.0000.0000.0000.000
179A202LEU0-0.0140.01220.9480.4450.4450.0000.0000.0000.000
180A203GLN0-0.0040.00222.2360.5200.5200.0000.0000.0000.000
181A204SER0-0.018-0.00122.3590.5860.5860.0000.0000.0000.000
182A205GLU-1-0.805-0.89621.28914.42914.4290.0000.0000.0000.000
183A206THR0-0.020-0.03617.1470.8050.8050.0000.0000.0000.000
184A207LEU0-0.028-0.00318.0450.8830.8830.0000.0000.0000.000
185A208ARG10.8730.93119.340-11.832-11.8320.0000.0000.0000.000
186A209ALA0-0.021-0.00616.9710.1510.1510.0000.0000.0000.000
187A210SER00.0500.02115.1431.3011.3010.0000.0000.0000.000
188A211ASP-1-0.972-0.97916.14015.93815.9380.0000.0000.0000.000
189A212PHE0-0.108-0.06518.916-0.589-0.5890.0000.0000.0000.000
190A213GLY00.0050.01514.850-0.040-0.0400.0000.0000.0000.000
191A214PHE0-0.066-0.04113.0991.3311.3310.0000.0000.0000.000
192A215SER0-0.027-0.0218.0580.7060.7060.0000.0000.0000.000
193A216ALA00.0100.0229.4331.4911.4910.0000.0000.0000.000
194A217LYS10.7360.85011.360-18.132-18.1320.0000.0000.0000.000
195A218ALA00.0310.01614.8150.4760.4760.0000.0000.0000.000
196A219ALA0-0.032-0.02216.470-0.690-0.6900.0000.0000.0000.000
197A220ILE00.0190.00319.3970.1830.1830.0000.0000.0000.000
198A221HIS00.0440.02322.027-0.321-0.3210.0000.0000.0000.000
199A222PRO00.0320.00320.5010.4690.4690.0000.0000.0000.000
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