FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: 39Z6L

Calculation Name: 3MUQ-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 3MUQ

Chain ID: A

ChEMBL ID:

UniProt ID: Q87PK2

Base Structure: X-ray

Registration Date: 2023-06-22

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 233
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2807144.108167
FMO2-HF: Nuclear repulsion 2715765.110993
FMO2-HF: Total energy -91378.997174
FMO2-MP2: Total energy -91645.57953


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:27:GLU)


Summations of interaction energy for fragment #1(A:27:GLU)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-12.925-13.41717.903-8.194-9.2160.065
Interaction energy analysis for fragmet #1(A:27:GLU)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : -1 / q_Mulliken : -0.897 / q_NPA : -0.957
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A29VAL0-0.0010.0193.7745.8808.041-0.020-0.806-1.3350.002
4A30ARG10.8580.9305.968-42.968-42.9680.0000.0000.0000.000
5A31LEU00.0290.0119.331-0.810-0.8100.0000.0000.0000.000
6A32ALA00.0010.02012.352-1.152-1.1520.0000.0000.0000.000
7A33THR00.002-0.03515.785-0.527-0.5270.0000.0000.0000.000
8A34THR00.0100.00518.676-0.271-0.2710.0000.0000.0000.000
9A35THR00.0310.00222.0770.4020.4020.0000.0000.0000.000
10A36SER0-0.006-0.00324.164-0.163-0.1630.0000.0000.0000.000
11A37THR0-0.003-0.00720.235-0.354-0.3540.0000.0000.0000.000
12A38TYR00.0030.01717.5850.2650.2650.0000.0000.0000.000
13A39HIS00.0340.00721.1080.1480.1480.0000.0000.0000.000
14A40SER0-0.100-0.05822.823-0.325-0.3250.0000.0000.0000.000
15A41GLY00.1100.05121.619-0.436-0.4360.0000.0000.0000.000
16A42LEU0-0.032-0.01219.4290.3730.3730.0000.0000.0000.000
17A43LEU00.004-0.02615.0810.3560.3560.0000.0000.0000.000
18A44ASP-1-0.866-0.92015.87716.21916.2190.0000.0000.0000.000
19A45TYR0-0.036-0.01717.544-0.041-0.0410.0000.0000.0000.000
20A46LEU0-0.050-0.02815.4950.1790.1790.0000.0000.0000.000
21A47LEU0-0.005-0.00611.0530.6090.6090.0000.0000.0000.000
22A48PRO00.0500.03411.2071.3331.3330.0000.0000.0000.000
23A49GLN0-0.017-0.00212.178-0.056-0.0560.0000.0000.0000.000
24A50PHE00.0360.0157.3500.4440.4440.0000.0000.0000.000
25A51GLU-1-0.842-0.9086.28427.31127.3110.0000.0000.0000.000
26A52LYS10.8930.9508.276-16.540-16.5400.0000.0000.0000.000
27A53ASP-1-0.822-0.90710.96018.06718.0670.0000.0000.0000.000
28A54THR0-0.071-0.0467.2661.2491.2490.0000.0000.0000.000
29A55GLY0-0.0030.0125.5491.8371.8370.0000.0000.0000.000
30A56TYR0-0.051-0.0202.115-2.1020.6942.860-2.199-3.4570.004
31A57LYS10.8940.9413.465-37.151-36.4210.003-0.218-0.5150.000
32A58VAL0-0.015-0.0135.1894.1264.091-0.001-0.0090.0450.000
33A59ASP-1-0.883-0.9228.44629.18529.1850.0000.0000.0000.000
34A60VAL0-0.023-0.02810.629-0.036-0.0360.0000.0000.0000.000
35A61ILE0-0.0090.00312.926-0.920-0.9200.0000.0000.0000.000
36A62ALA0-0.015-0.00816.467-0.253-0.2530.0000.0000.0000.000
37A63ALA0-0.005-0.00619.836-0.526-0.5260.0000.0000.0000.000
38A64GLY00.0200.01122.543-0.226-0.2260.0000.0000.0000.000
39A65THR00.0620.01223.4740.5750.5750.0000.0000.0000.000
40A66GLY00.0210.01523.5150.3860.3860.0000.0000.0000.000
41A67LYS10.9330.97021.564-13.384-13.3840.0000.0000.0000.000
42A68ALA00.0560.02219.4340.5730.5730.0000.0000.0000.000
43A69LEU00.0230.00418.8850.7230.7230.0000.0000.0000.000
44A70LYS10.8920.96920.254-12.944-12.9440.0000.0000.0000.000
45A71MET0-0.009-0.00516.7970.0430.0430.0000.0000.0000.000
46A72GLY00.0220.02315.8431.2601.2600.0000.0000.0000.000
47A73GLU-1-0.943-0.98716.92213.93813.9380.0000.0000.0000.000
48A74ASN0-0.037-0.03218.912-0.624-0.6240.0000.0000.0000.000
49A75GLY00.0240.03314.6750.1160.1160.0000.0000.0000.000
50A76ASP-1-0.884-0.94113.58820.21820.2180.0000.0000.0000.000
51A77VAL0-0.093-0.05111.2871.6611.6610.0000.0000.0000.000
52A78ASP-1-0.716-0.8527.04442.56442.5640.0000.0000.0000.000
53A79LEU0-0.046-0.0279.914-1.279-1.2790.0000.0000.0000.000
54A80VAL0-0.0100.00812.705-0.146-0.1460.0000.0000.0000.000
55A81MET00.0240.01315.900-0.540-0.5400.0000.0000.0000.000
56A82THR0-0.075-0.04918.257-0.238-0.2380.0000.0000.0000.000
57A83HIS00.0520.02421.9490.2960.2960.0000.0000.0000.000
58A84ALA0-0.031-0.01925.403-0.579-0.5790.0000.0000.0000.000
59A85PRO00.0420.02126.7740.1860.1860.0000.0000.0000.000
60A86LYS10.9890.99828.158-9.218-9.2180.0000.0000.0000.000
61A87ALA00.0200.00726.6040.0310.0310.0000.0000.0000.000
62A88GLU-1-0.731-0.84122.74113.40513.4050.0000.0000.0000.000
63A89GLY00.0170.01324.5020.3350.3350.0000.0000.0000.000
64A90THR00.0100.00426.945-0.101-0.1010.0000.0000.0000.000
65A91PHE0-0.028-0.01218.027-0.004-0.0040.0000.0000.0000.000
66A92VAL0-0.006-0.01421.6910.4340.4340.0000.0000.0000.000
67A93GLU-1-0.954-0.96323.44910.94510.9450.0000.0000.0000.000
68A94LYS10.8960.95125.179-11.576-11.5760.0000.0000.0000.000
69A95GLY00.0450.03422.6940.1240.1240.0000.0000.0000.000
70A96TYR0-0.063-0.03920.1150.6590.6590.0000.0000.0000.000
71A97GLY00.0150.01217.6761.2111.2110.0000.0000.0000.000
72A98VAL0-0.005-0.01316.174-0.985-0.9850.0000.0000.0000.000
73A99LEU0-0.042-0.03415.6250.6980.6980.0000.0000.0000.000
74A100PRO00.0020.01718.1860.5920.5920.0000.0000.0000.000
75A101ARG10.8760.92215.800-18.579-18.5790.0000.0000.0000.000
76A102LYS10.9120.96220.958-11.699-11.6990.0000.0000.0000.000
77A103LEU00.0300.01517.9680.0210.0210.0000.0000.0000.000
78A104MET00.0110.00821.916-0.418-0.4180.0000.0000.0000.000
79A105TYR0-0.012-0.01525.2390.0700.0700.0000.0000.0000.000
80A106ASN0-0.008-0.00526.998-0.314-0.3140.0000.0000.0000.000
81A107ASP-1-0.789-0.85929.9728.6898.6890.0000.0000.0000.000
82A108PHE0-0.010-0.01230.8420.0070.0070.0000.0000.0000.000
83A109VAL00.0000.00235.984-0.115-0.1150.0000.0000.0000.000
84A110ILE00.0050.01439.7810.1070.1070.0000.0000.0000.000
85A111VAL00.0000.00042.394-0.132-0.1320.0000.0000.0000.000
86A112GLY00.0480.00844.8830.0530.0530.0000.0000.0000.000
87A113PRO00.0350.03648.158-0.029-0.0290.0000.0000.0000.000
88A114LYS10.9220.97651.790-5.825-5.8250.0000.0000.0000.000
89A115ALA0-0.027-0.02253.529-0.029-0.0290.0000.0000.0000.000
90A116ASP-1-0.751-0.85551.6976.1746.1740.0000.0000.0000.000
91A117PRO0-0.006-0.00352.830-0.063-0.0630.0000.0000.0000.000
92A118ALA0-0.012-0.02751.010-0.085-0.0850.0000.0000.0000.000
93A119LYS10.7970.90452.970-5.659-5.6590.0000.0000.0000.000
94A120ILE00.1260.06846.6810.0340.0340.0000.0000.0000.000
95A121LYS10.8370.92749.101-6.102-6.1020.0000.0000.0000.000
96A122ASP-1-0.981-0.98149.7696.1396.1390.0000.0000.0000.000
97A123ASP-1-0.855-0.92447.7036.5176.5170.0000.0000.0000.000
98A124GLU-1-0.972-0.98846.4806.7286.7280.0000.0000.0000.000
99A125SER0-0.057-0.02241.9770.2370.2370.0000.0000.0000.000
100A126VAL00.022-0.02138.445-0.086-0.0860.0000.0000.0000.000
101A127LEU0-0.103-0.06638.3520.0000.0000.0000.0000.0000.000
102A128ASP-1-0.868-0.93142.2556.9356.9350.0000.0000.0000.000
103A129VAL00.0690.04343.948-0.081-0.0810.0000.0000.0000.000
104A130PHE0-0.062-0.04638.970-0.039-0.0390.0000.0000.0000.000
105A131LYS10.9260.96143.749-7.384-7.3840.0000.0000.0000.000
106A132GLU-1-0.900-0.92346.5546.1826.1820.0000.0000.0000.000
107A133ILE0-0.022-0.02145.239-0.137-0.1370.0000.0000.0000.000
108A134ALA0-0.017-0.01145.957-0.104-0.1040.0000.0000.0000.000
109A135ASN0-0.047-0.03047.990-0.112-0.1120.0000.0000.0000.000
110A136LYS10.8500.94151.243-6.054-6.0540.0000.0000.0000.000
111A137ASN0-0.0040.01050.6500.0240.0240.0000.0000.0000.000
112A138ALA00.0060.01949.878-0.094-0.0940.0000.0000.0000.000
113A139THR00.015-0.00548.0400.0890.0890.0000.0000.0000.000
114A140PHE0-0.034-0.00540.2830.0420.0420.0000.0000.0000.000
115A141ILE0-0.0070.01341.6860.0040.0040.0000.0000.0000.000
116A142SER0-0.040-0.02637.4030.1680.1680.0000.0000.0000.000
117A143ARG10.8350.89231.558-9.393-9.3930.0000.0000.0000.000
118A144GLY00.0220.00935.807-0.042-0.0420.0000.0000.0000.000
119A145ASP-1-0.743-0.84632.5489.3439.3430.0000.0000.0000.000
120A146ASP-1-0.944-0.96728.41010.14310.1430.0000.0000.0000.000
121A147SER0-0.055-0.06027.9200.4590.4590.0000.0000.0000.000
122A148GLY00.0480.01427.441-0.020-0.0200.0000.0000.0000.000
123A149THR0-0.014-0.02228.002-0.144-0.1440.0000.0000.0000.000
124A150HIS00.0360.04631.508-0.009-0.0090.0000.0000.0000.000
125A151LYS10.9360.96926.229-11.232-11.2320.0000.0000.0000.000
126A152LYS10.8570.94430.430-10.081-10.0810.0000.0000.0000.000
127A153GLU-1-0.722-0.83231.8698.1558.1550.0000.0000.0000.000
128A154MET0-0.0010.00032.717-0.213-0.2130.0000.0000.0000.000
129A155GLY00.0050.00932.835-0.078-0.0780.0000.0000.0000.000
130A156PHE0-0.038-0.02433.571-0.004-0.0040.0000.0000.0000.000
131A157TRP00.0640.03136.905-0.181-0.1810.0000.0000.0000.000
132A158ALA00.0570.03734.990-0.149-0.1490.0000.0000.0000.000
133A159GLN0-0.106-0.06534.127-0.217-0.2170.0000.0000.0000.000
134A160THR0-0.102-0.05637.986-0.210-0.2100.0000.0000.0000.000
135A161LYS10.8950.94438.736-8.433-8.4330.0000.0000.0000.000
136A162ILE00.0130.02441.617-0.157-0.1570.0000.0000.0000.000
137A163GLU-1-0.918-0.95340.6007.9047.9040.0000.0000.0000.000
138A164PRO0-0.030-0.01839.203-0.214-0.2140.0000.0000.0000.000
139A165ASN0-0.003-0.01642.5030.0160.0160.0000.0000.0000.000
140A166PHE0-0.0350.00644.443-0.128-0.1280.0000.0000.0000.000
141A167GLY00.0460.01147.6410.0580.0580.0000.0000.0000.000
142A168GLY0-0.034-0.01749.3130.0060.0060.0000.0000.0000.000
143A169TYR0-0.099-0.06638.9910.0990.0990.0000.0000.0000.000
144A170ARG10.9620.97444.322-6.526-6.5260.0000.0000.0000.000
145A171SER00.0180.02138.3310.1510.1510.0000.0000.0000.000
146A172VAL0-0.026-0.02439.474-0.063-0.0630.0000.0000.0000.000
147A173GLY00.0280.03336.522-0.072-0.0720.0000.0000.0000.000
148A174GLN0-0.057-0.03136.7310.0820.0820.0000.0000.0000.000
149A175GLY00.0660.03334.5650.1760.1760.0000.0000.0000.000
150A176MET0-0.0050.02634.906-0.132-0.1320.0000.0000.0000.000
151A177GLY00.0370.01636.691-0.192-0.1920.0000.0000.0000.000
152A178PRO0-0.012-0.01838.056-0.195-0.1950.0000.0000.0000.000
153A179THR00.0220.00638.236-0.191-0.1910.0000.0000.0000.000
154A180LEU00.0100.00440.076-0.172-0.1720.0000.0000.0000.000
155A181ASN00.024-0.00142.783-0.214-0.2140.0000.0000.0000.000
156A182MET0-0.0060.00844.038-0.222-0.2220.0000.0000.0000.000
157A183ALA00.004-0.00244.543-0.134-0.1340.0000.0000.0000.000
158A184SER00.0390.02446.393-0.136-0.1360.0000.0000.0000.000
159A185GLU-1-0.967-0.96948.7075.8385.8380.0000.0000.0000.000
160A186MET0-0.054-0.03948.992-0.077-0.0770.0000.0000.0000.000
161A187GLN0-0.073-0.03050.956-0.098-0.0980.0000.0000.0000.000
162A188GLY0-0.021-0.01848.340-0.062-0.0620.0000.0000.0000.000
163A189TYR0-0.037-0.07245.562-0.002-0.0020.0000.0000.0000.000
164A190THR0-0.024-0.02940.9020.1200.1200.0000.0000.0000.000
165A191MET0-0.034-0.00234.520-0.028-0.0280.0000.0000.0000.000
166A192SER00.013-0.02437.3950.0900.0900.0000.0000.0000.000
167A193ASP-1-0.807-0.85133.4049.0169.0160.0000.0000.0000.000
168A194ARG10.8290.85735.310-8.379-8.3790.0000.0000.0000.000
169A195GLY00.0130.00935.293-0.202-0.2020.0000.0000.0000.000
170A196THR0-0.048-0.07835.318-0.174-0.1740.0000.0000.0000.000
171A197TRP00.000-0.00637.647-0.208-0.2080.0000.0000.0000.000
172A198LEU0-0.027-0.01938.731-0.193-0.1930.0000.0000.0000.000
173A199ALA0-0.029-0.00439.235-0.162-0.1620.0000.0000.0000.000
174A200TYR0-0.010-0.01239.210-0.165-0.1650.0000.0000.0000.000
175A201GLN00.0200.01643.458-0.089-0.0890.0000.0000.0000.000
176A202ASN0-0.039-0.01945.968-0.023-0.0230.0000.0000.0000.000
177A203LYS10.8680.94343.758-7.113-7.1130.0000.0000.0000.000
178A204LEU0-0.057-0.01643.9650.0300.0300.0000.0000.0000.000
179A205ASP-1-0.877-0.92148.6805.8815.8810.0000.0000.0000.000
180A206LEU0-0.083-0.05446.0750.0020.0020.0000.0000.0000.000
181A207GLU-1-0.873-0.95148.3236.0926.0920.0000.0000.0000.000
182A208ILE0-0.030-0.02142.9120.0990.0990.0000.0000.0000.000
183A209LEU0-0.073-0.03445.897-0.115-0.1150.0000.0000.0000.000
184A210PHE00.0460.03241.6650.0220.0220.0000.0000.0000.000
185A211GLN00.0550.01641.0090.3390.3390.0000.0000.0000.000
186A212GLY0-0.0050.01240.9350.1570.1570.0000.0000.0000.000
187A213ASP-1-0.696-0.85638.6988.1968.1960.0000.0000.0000.000
188A214GLU-1-0.944-0.96135.3768.9588.9580.0000.0000.0000.000
189A215LYS10.8700.94434.140-8.344-8.3440.0000.0000.0000.000
190A216LEU0-0.037-0.02833.8990.3210.3210.0000.0000.0000.000
191A217PHE00.0130.01332.6130.1650.1650.0000.0000.0000.000
192A218ASN0-0.053-0.03028.3840.2610.2610.0000.0000.0000.000
193A219PRO0-0.018-0.00527.6510.2490.2490.0000.0000.0000.000
194A220TYR00.000-0.00422.152-0.092-0.0920.0000.0000.0000.000
195A221GLN0-0.056-0.05821.402-0.061-0.0610.0000.0000.0000.000
196A222VAL00.0010.01414.9930.2910.2910.0000.0000.0000.000
197A223ILE0-0.046-0.03116.938-0.477-0.4770.0000.0000.0000.000
198A224LEU00.0290.01911.7720.8160.8160.0000.0000.0000.000
199A225VAL00.0360.02412.623-1.955-1.9550.0000.0000.0000.000
200A226ASN0-0.018-0.01513.6011.9241.9240.0000.0000.0000.000
201A227PRO00.0150.00812.3750.1000.1000.0000.0000.0000.000
202A228GLU-1-0.928-0.97414.01615.46915.4690.0000.0000.0000.000
203A229ARG10.8120.92017.250-16.466-16.4660.0000.0000.0000.000
204A230TYR0-0.055-0.02713.329-0.539-0.5390.0000.0000.0000.000
205A231PRO00.0230.01412.5252.1532.1530.0000.0000.0000.000
206A232THR0-0.033-0.02110.1731.4131.4130.0000.0000.0000.000
207A233ILE0-0.0450.0008.4633.8473.8470.0000.0000.0000.000
208A234ASN00.012-0.0251.726-23.066-29.35715.063-4.938-3.8340.059
209A235TYR00.031-0.0025.901-2.176-2.1760.0000.0000.0000.000
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