FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

tag_button

FMODB ID: 3M32L

Calculation Name: 1JSS-A-Xray547

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 1JSS

Chain ID: A

ChEMBL ID:

UniProt ID: Q99JV5

Base Structure: X-ray

Registration Date: 2025-10-05

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Homology Modeling
Water No
Procedure Manual calculation
Remarks
ac.sh, 23 2024 Oct; Missing atoms/residues were imported from a 100% homology model, which was constructed by MOE.
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 199
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -2378783.184649
FMO2-HF: Nuclear repulsion 2297669.772292
FMO2-HF: Total energy -81113.412357
FMO2-MP2: Total energy -81346.519107


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:24:ALA)


Summations of interaction energy for fragment #1(A:24:ALA)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-107.095-103.9420.345-1.215-2.282-0.004
Interaction energy analysis for fragmet #1(A:24:ALA)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.909 / q_NPA : 0.945
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A26ILE00.0290.0102.7057.71610.2970.348-1.087-1.842-0.004
4A27SER00.0700.0474.0775.6875.958-0.001-0.066-0.2040.000
85A108PHE0-0.077-0.0195.164-3.917-3.774-0.001-0.009-0.1330.000
112A135PHE0-0.036-0.0084.418-3.570-3.412-0.001-0.053-0.1030.000
5A28THR00.0080.0065.8714.5094.5090.0000.0000.0000.000
6A29LYS10.9440.9717.01937.20837.2080.0000.0000.0000.000
7A30LEU00.0260.0328.0453.0093.0090.0000.0000.0000.000
8A31GLN00.0500.0239.9972.8142.8140.0000.0000.0000.000
9A32ASN0-0.027-0.02011.9982.3832.3830.0000.0000.0000.000
10A33THR00.001-0.00312.4571.7431.7430.0000.0000.0000.000
11A34LEU00.0080.01313.7321.4501.4500.0000.0000.0000.000
12A35ILE0-0.005-0.00215.6541.1771.1770.0000.0000.0000.000
13A36GLN0-0.0160.00417.7120.2840.2840.0000.0000.0000.000
14A37TYR0-0.038-0.04317.1600.7160.7160.0000.0000.0000.000
15A38HIS00.0180.02120.2810.7660.7660.0000.0000.0000.000
16A39SER0-0.054-0.02322.1150.5900.5900.0000.0000.0000.000
17A40ILE0-0.051-0.00222.5760.5130.5130.0000.0000.0000.000
18A41GLU-1-0.846-0.91725.913-11.012-11.0120.0000.0000.0000.000
19A42GLU-1-0.976-1.01929.399-9.890-9.8900.0000.0000.0000.000
20A43ASP-1-0.928-0.94831.863-9.288-9.2880.0000.0000.0000.000
21A44GLU-1-0.882-0.92928.128-11.280-11.2800.0000.0000.0000.000
22A45TRP0-0.105-0.06523.856-0.138-0.1380.0000.0000.0000.000
23A46ARG10.9050.95630.94710.30910.3090.0000.0000.0000.000
24A47VAL0-0.024-0.01932.279-0.201-0.2010.0000.0000.0000.000
25A48ALA0-0.046-0.01931.3230.1940.1940.0000.0000.0000.000
26A49LYS10.8900.93233.2699.2769.2760.0000.0000.0000.000
27A50LYS10.9751.00134.1178.1758.1750.0000.0000.0000.000
28A51ALA0-0.030-0.02134.4870.2070.2070.0000.0000.0000.000
29A52LYS10.9170.94836.5057.7677.7670.0000.0000.0000.000
30A53ASP-1-0.738-0.85833.969-9.183-9.1830.0000.0000.0000.000
31A54VAL00.0190.01930.106-0.312-0.3120.0000.0000.0000.000
32A55THR0-0.059-0.00531.7290.4780.4780.0000.0000.0000.000
33A56VAL00.0110.00328.336-0.400-0.4000.0000.0000.0000.000
34A57TRP00.0320.00528.9640.3780.3780.0000.0000.0000.000
35A58ARG10.8600.92927.7159.6529.6520.0000.0000.0000.000
36A59LYS10.9160.96224.62112.72012.7200.0000.0000.0000.000
37A60PRO00.007-0.01226.478-0.277-0.2770.0000.0000.0000.000
38A61SER0-0.041-0.02720.794-0.290-0.2900.0000.0000.0000.000
39A62GLU-1-0.935-0.97021.189-12.943-12.9430.0000.0000.0000.000
40A63GLU-1-0.905-0.93116.550-18.347-18.3470.0000.0000.0000.000
41A64PHE0-0.039-0.03819.3370.0610.0610.0000.0000.0000.000
42A65ASN0-0.021-0.00922.0370.5520.5520.0000.0000.0000.000
43A66GLY00.0190.00325.3840.1710.1710.0000.0000.0000.000
44A67TYR0-0.083-0.03625.3740.2150.2150.0000.0000.0000.000
45A68LEU00.0340.03820.212-0.465-0.4650.0000.0000.0000.000
46A69TYR00.002-0.01723.4201.0201.0200.0000.0000.0000.000
47A70LYS10.9781.01523.35011.18711.1870.0000.0000.0000.000
48A71ALA0-0.030-0.02725.0760.5970.5970.0000.0000.0000.000
49A72GLN00.0390.03025.964-0.776-0.7760.0000.0000.0000.000
50A73GLY00.0270.01628.3990.4460.4460.0000.0000.0000.000
51A74VAL00.0040.01529.358-0.432-0.4320.0000.0000.0000.000
52A75MET0-0.0140.00227.0920.2000.2000.0000.0000.0000.000
53A76ASP-1-0.875-0.92830.443-9.181-9.1810.0000.0000.0000.000
54A77ASP-1-0.770-0.88028.877-10.773-10.7730.0000.0000.0000.000
55A78VAL00.0090.01826.407-0.199-0.1990.0000.0000.0000.000
56A79VAL00.0540.00521.562-0.207-0.2070.0000.0000.0000.000
57A80ASN0-0.009-0.00521.512-0.114-0.1140.0000.0000.0000.000
58A81ASN00.0260.00622.604-0.728-0.7280.0000.0000.0000.000
59A82VAL00.0170.01323.537-0.065-0.0650.0000.0000.0000.000
60A83ILE00.004-0.00717.859-0.309-0.3090.0000.0000.0000.000
61A84ASP-1-0.872-0.94919.491-16.508-16.5080.0000.0000.0000.000
62A85HIS10.7620.88621.00012.25712.2570.0000.0000.0000.000
63A86ILE0-0.016-0.00318.5070.2350.2350.0000.0000.0000.000
64A87ARG10.8940.96614.06319.37919.3790.0000.0000.0000.000
65A88PRO00.0130.00315.1130.9700.9700.0000.0000.0000.000
66A89GLY00.0550.02118.352-0.305-0.3050.0000.0000.0000.000
67A90PRO0-0.041-0.02821.3700.3190.3190.0000.0000.0000.000
68A91TRP00.0430.01625.1030.3990.3990.0000.0000.0000.000
69A92ARG10.7790.87820.32714.80514.8050.0000.0000.0000.000
70A93LEU0-0.018-0.01923.224-0.116-0.1160.0000.0000.0000.000
71A94ASP-1-0.948-0.96225.974-9.895-9.8950.0000.0000.0000.000
72A95TRP0-0.013-0.00423.5010.5060.5060.0000.0000.0000.000
73A96ASP-1-0.821-0.89924.145-12.572-12.5720.0000.0000.0000.000
74A97ARG10.7900.85127.4589.7589.7580.0000.0000.0000.000
75A98LEU0-0.061-0.01825.9550.2890.2890.0000.0000.0000.000
76A99MET0-0.0240.01120.205-0.238-0.2380.0000.0000.0000.000
77A100THR0-0.017-0.02925.2920.3280.3280.0000.0000.0000.000
78A101SER0-0.063-0.04423.3560.1110.1110.0000.0000.0000.000
79A102LEU00.033-0.00817.216-0.337-0.3370.0000.0000.0000.000
80A103ASP-1-0.824-0.87618.035-14.974-14.9740.0000.0000.0000.000
81A104VAL0-0.021-0.02612.946-0.931-0.9310.0000.0000.0000.000
82A105LEU0-0.057-0.02813.3540.9390.9390.0000.0000.0000.000
83A106GLU-1-0.902-0.9608.215-35.110-35.1100.0000.0000.0000.000
84A107HIS0-0.086-0.0469.3821.8771.8770.0000.0000.0000.000
86A109GLU-1-0.904-0.9615.671-42.618-42.6180.0000.0000.0000.000
87A110GLU-1-0.917-0.9578.523-20.228-20.2280.0000.0000.0000.000
88A111ASN0-0.004-0.0079.9462.0452.0450.0000.0000.0000.000
89A112CYS0-0.077-0.0305.285-5.011-5.0110.0000.0000.0000.000
90A113CYS00.0240.0157.2870.9680.9680.0000.0000.0000.000
91A114VAL00.0130.0057.626-3.210-3.2100.0000.0000.0000.000
92A115MET00.0020.0069.8522.3492.3490.0000.0000.0000.000
93A116ARG10.7850.87513.51415.49715.4970.0000.0000.0000.000
94A117TYR0-0.009-0.01415.7861.0781.0780.0000.0000.0000.000
95A118THR0-0.0230.02119.667-0.036-0.0360.0000.0000.0000.000
96A119THR0-0.048-0.01623.0730.0940.0940.0000.0000.0000.000
97A120ALA00.0770.02825.5600.2060.2060.0000.0000.0000.000
98A121GLY0-0.0030.01029.270-0.136-0.1360.0000.0000.0000.000
99A122GLN00.006-0.01227.8150.3850.3850.0000.0000.0000.000
100A123LEU0-0.034-0.02732.8170.1710.1710.0000.0000.0000.000
101A124LEU00.016-0.00135.9850.1040.1040.0000.0000.0000.000
102A125ASN0-0.015-0.00534.765-0.046-0.0460.0000.0000.0000.000
103A126ILE0-0.038-0.00434.934-0.070-0.0700.0000.0000.0000.000
104A127ILE0-0.034-0.01029.066-0.169-0.1690.0000.0000.0000.000
105A128SER00.0460.01530.9380.0060.0060.0000.0000.0000.000
106A129PRO00.0430.02928.374-0.269-0.2690.0000.0000.0000.000
107A130ARG10.7870.88723.40711.66111.6610.0000.0000.0000.000
108A131GLU-1-0.750-0.86019.688-15.212-15.2120.0000.0000.0000.000
109A132PHE0-0.014-0.00117.2100.3560.3560.0000.0000.0000.000
110A133VAL00.0370.00613.0760.2370.2370.0000.0000.0000.000
111A134ASP-1-0.752-0.81512.013-21.068-21.0680.0000.0000.0000.000
113A136SER0-0.032-0.0188.3652.7192.7190.0000.0000.0000.000
114A137TYR00.031-0.0067.040-4.435-4.4350.0000.0000.0000.000
115A138THR0-0.0030.0118.8983.6903.6900.0000.0000.0000.000
116A139VAL0-0.025-0.00611.002-1.234-1.2340.0000.0000.0000.000
117A140GLY00.0380.02012.9211.4061.4060.0000.0000.0000.000
118A141TYR0-0.050-0.05015.851-0.958-0.9580.0000.0000.0000.000
119A142GLU-1-0.843-0.91918.434-13.548-13.5480.0000.0000.0000.000
120A143GLU-1-0.986-0.98821.399-11.855-11.8550.0000.0000.0000.000
121A144GLY0-0.027-0.02521.6390.4740.4740.0000.0000.0000.000
122A145LEU0-0.039-0.00816.441-0.801-0.8010.0000.0000.0000.000
123A146LEU0-0.0060.00713.8190.6610.6610.0000.0000.0000.000
124A147SER0-0.046-0.02513.825-1.167-1.1670.0000.0000.0000.000
125A148CYS0-0.037-0.02811.1720.5920.5920.0000.0000.0000.000
126A149GLY00.0760.01510.421-1.967-1.9670.0000.0000.0000.000
127A150VAL0-0.0220.0009.1481.2871.2870.0000.0000.0000.000
128A151SER00.025-0.01310.870-1.194-1.1940.0000.0000.0000.000
129A152VAL0-0.077-0.0398.210-1.449-1.4490.0000.0000.0000.000
130A153GLU-1-0.909-0.94810.986-17.271-17.2710.0000.0000.0000.000
131A154TRP0-0.012-0.01711.660-1.553-1.5530.0000.0000.0000.000
132A155SER00.0470.02114.9360.8030.8030.0000.0000.0000.000
133A156GLU-1-0.926-0.93218.147-14.226-14.2260.0000.0000.0000.000
134A157THR00.010-0.00419.815-0.243-0.2430.0000.0000.0000.000
135A158ARG10.9040.92921.55714.43314.4330.0000.0000.0000.000
136A159PRO0-0.002-0.00525.567-0.015-0.0150.0000.0000.0000.000
137A160GLU-1-0.955-0.96628.330-10.532-10.5320.0000.0000.0000.000
138A161PHE0-0.018-0.02124.6920.0090.0090.0000.0000.0000.000
139A162VAL0-0.0060.00825.158-0.279-0.2790.0000.0000.0000.000
140A163ARG10.7920.88016.79516.93716.9370.0000.0000.0000.000
141A164GLY0-0.0070.00121.3310.3740.3740.0000.0000.0000.000
142A165TYR0-0.071-0.05912.227-0.238-0.2380.0000.0000.0000.000
143A166ASN0-0.004-0.00815.4751.8111.8110.0000.0000.0000.000
144A167HIS00.0500.03414.749-2.220-2.2200.0000.0000.0000.000
145A168PRO0-0.019-0.01212.530-0.050-0.0500.0000.0000.0000.000
146A169CYS0-0.026-0.00714.1841.6931.6930.0000.0000.0000.000
147A170GLY00.037-0.00814.427-1.857-1.8570.0000.0000.0000.000
148A171TRP0-0.0040.00316.4451.5911.5910.0000.0000.0000.000
149A172PHE00.0540.03017.600-0.974-0.9740.0000.0000.0000.000
150A173CYS0-0.070-0.02720.0810.8890.8890.0000.0000.0000.000
151A174VAL00.0510.03021.946-0.508-0.5080.0000.0000.0000.000
152A175PRO00.0780.02324.4950.3780.3780.0000.0000.0000.000
153A176LEU0-0.040-0.00627.808-0.026-0.0260.0000.0000.0000.000
154A177LYS10.9070.95030.8219.1159.1150.0000.0000.0000.000
155A178ASP-1-0.864-0.92832.772-8.904-8.9040.0000.0000.0000.000
156A179SER0-0.100-0.05834.1470.3020.3020.0000.0000.0000.000
157A180PRO00.0440.00831.794-0.235-0.2350.0000.0000.0000.000
158A181SER0-0.057-0.02931.537-0.156-0.1560.0000.0000.0000.000
159A182GLN0-0.0330.00031.7340.0640.0640.0000.0000.0000.000
160A183SER00.011-0.01826.527-0.303-0.3030.0000.0000.0000.000
161A184LEU0-0.0310.00027.2690.3400.3400.0000.0000.0000.000
162A185LEU00.0050.01122.566-0.577-0.5770.0000.0000.0000.000
163A186THR00.015-0.00623.4190.5550.5550.0000.0000.0000.000
164A187GLY0-0.0030.00921.293-0.825-0.8250.0000.0000.0000.000
165A188TYR0-0.014-0.03319.1120.7770.7770.0000.0000.0000.000
166A189ILE00.001-0.00119.083-0.813-0.8130.0000.0000.0000.000
167A190GLN00.0370.01917.6531.5731.5730.0000.0000.0000.000
168A191THR00.010-0.00819.438-0.338-0.3380.0000.0000.0000.000
169A192ASP-1-0.817-0.87720.390-12.961-12.9610.0000.0000.0000.000
170A193LEU00.026-0.00921.831-0.311-0.3110.0000.0000.0000.000
171A194ARG10.8730.94818.62215.25015.2500.0000.0000.0000.000
172A195GLY00.0160.01624.9120.3710.3710.0000.0000.0000.000
173A196MET0-0.034-0.02728.1570.0500.0500.0000.0000.0000.000
174A197ILE00.0370.02028.7420.1520.1520.0000.0000.0000.000
175A198PRO00.0050.00832.429-0.058-0.0580.0000.0000.0000.000
176A199GLN00.0640.02629.972-0.318-0.3180.0000.0000.0000.000
177A200SER00.0270.02433.392-0.184-0.1840.0000.0000.0000.000
178A201ALA0-0.0050.00834.5200.0520.0520.0000.0000.0000.000
179A202VAL00.0520.02128.268-0.130-0.1300.0000.0000.0000.000
180A203ASP-1-0.862-0.94530.294-10.198-10.1980.0000.0000.0000.000
181A204THR0-0.050-0.03832.1360.0160.0160.0000.0000.0000.000
182A205ALA00.0220.01630.2590.0160.0160.0000.0000.0000.000
183A206MET00.0250.03423.637-0.067-0.0670.0000.0000.0000.000
184A207ALA00.0400.01628.350-0.158-0.1580.0000.0000.0000.000
185A208SER0-0.085-0.06430.6420.2190.2190.0000.0000.0000.000
186A209THR0-0.004-0.00125.9160.0800.0800.0000.0000.0000.000
187A210LEU00.0210.01224.400-0.084-0.0840.0000.0000.0000.000
188A211ALA0-0.002-0.00427.6830.0290.0290.0000.0000.0000.000
189A212ASN0-0.034-0.01930.5420.4330.4330.0000.0000.0000.000
190A213PHE00.0800.04721.9920.2180.2180.0000.0000.0000.000
191A214TYR00.007-0.02326.065-0.103-0.1030.0000.0000.0000.000
192A215SER0-0.111-0.06029.1540.3360.3360.0000.0000.0000.000
193A216ASP-1-0.796-0.86529.413-9.806-9.8060.0000.0000.0000.000
194A217LEU00.0290.02024.8410.1030.1030.0000.0000.0000.000
195A218ARG10.7520.85228.3879.9569.9560.0000.0000.0000.000
196A219LYS10.9380.97331.5399.2029.2020.0000.0000.0000.000
197A220GLY00.0390.01629.1410.1120.1120.0000.0000.0000.000
198A221LEU0-0.137-0.05527.076-0.154-0.1540.0000.0000.0000.000
199A222ARG0-0.0270.01630.6120.9770.9770.0000.0000.0000.000