FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 3M79L

Calculation Name: 2AH5-A-Xray547

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 2AH5

Chain ID: A

ChEMBL ID:

UniProt ID: A0A0H2

Base Structure: X-ray

Registration Date: 2025-10-05

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Homology Modeling
Water No
Procedure Manual calculation
Remarks
ac.sh, 23 2024 Oct; Missing atoms/residues were imported from a 100% homology model, which was constructed by MOE.
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 210
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -2463117.444548
FMO2-HF: Nuclear repulsion 2381577.927431
FMO2-HF: Total energy -81539.517117
FMO2-MP2: Total energy -81779.68342


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:MET)


Summations of interaction energy for fragment #1(A:1:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-315.941-301.12913.107-10.522-17.401-0.116
Interaction energy analysis for fragmet #1(A:1:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.844 / q_NPA : 0.937
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3SER0-0.044-0.0203.1812.8344.8720.027-0.493-1.573-0.002
4A4ILE0-0.055-0.0042.2134.0855.0081.522-1.082-1.363-0.003
100A100TYR0-0.056-0.0303.923-3.797-3.4720.002-0.072-0.2560.000
176A176GLN00.0390.0262.792-14.587-12.4020.114-1.180-1.120-0.012
208A208TYR0-0.057-0.0282.143-22.132-19.7494.939-3.172-4.150-0.038
209A209PHE0-0.048-0.0462.147-20.539-17.0733.249-2.578-4.138-0.024
210A210GLN-1-0.949-0.9642.598-41.412-37.9203.254-1.945-4.801-0.037
5A5THR0-0.004-0.0145.5501.2441.2440.0000.0000.0000.000
6A6ALA0-0.0010.0098.3792.9252.9250.0000.0000.0000.000
7A7ILE0-0.0020.0146.915-2.900-2.9000.0000.0000.0000.000
8A8PHE0-0.018-0.0139.7972.5692.5690.0000.0000.0000.000
9A9PHE00.0570.01912.119-1.464-1.4640.0000.0000.0000.000
10A10ASP-1-0.709-0.82914.882-14.412-14.4120.0000.0000.0000.000
11A11LEU0-0.027-0.02118.027-0.090-0.0900.0000.0000.0000.000
12A12ASP-1-0.766-0.85521.001-12.061-12.0610.0000.0000.0000.000
13A13GLY00.0200.03421.590-0.471-0.4710.0000.0000.0000.000
14A14THR0-0.061-0.05215.816-0.682-0.6820.0000.0000.0000.000
15A15LEU00.0150.00816.604-0.144-0.1440.0000.0000.0000.000
16A16VAL0-0.021-0.03119.8000.4910.4910.0000.0000.0000.000
17A17ASP-1-0.800-0.86523.595-11.481-11.4810.0000.0000.0000.000
18A18SER0-0.022-0.06626.0360.4610.4610.0000.0000.0000.000
19A19SER0-0.039-0.05328.5560.5450.5450.0000.0000.0000.000
20A20ILE0-0.010-0.00630.0890.3790.3790.0000.0000.0000.000
21A21GLY00.0530.02532.7410.2900.2900.0000.0000.0000.000
22A22ILE0-0.048-0.02228.4040.2700.2700.0000.0000.0000.000
23A23HIS00.0330.01032.9340.1090.1090.0000.0000.0000.000
24A24ASN0-0.049-0.02735.2730.3250.3250.0000.0000.0000.000
25A25ALA00.0100.02135.7110.2600.2600.0000.0000.0000.000
26A26PHE00.0100.00632.7340.2370.2370.0000.0000.0000.000
27A27THR0-0.029-0.02938.0810.2890.2890.0000.0000.0000.000
28A28TYR0-0.041-0.01240.8410.2870.2870.0000.0000.0000.000
29A29THR00.002-0.02040.0320.1930.1930.0000.0000.0000.000
30A30PHE00.009-0.01438.7870.1270.1270.0000.0000.0000.000
31A31LYS10.8400.92343.9826.9156.9150.0000.0000.0000.000
32A32GLU-1-0.885-0.93945.928-6.528-6.5280.0000.0000.0000.000
33A33LEU0-0.026-0.01043.9490.1150.1150.0000.0000.0000.000
34A34GLY0-0.031-0.00147.8030.0990.0990.0000.0000.0000.000
35A35VAL0-0.045-0.02045.3190.1050.1050.0000.0000.0000.000
36A36PRO0-0.033-0.03246.319-0.072-0.0720.0000.0000.0000.000
37A37SER00.006-0.00440.743-0.126-0.1260.0000.0000.0000.000
38A38PRO0-0.0090.00938.3870.0750.0750.0000.0000.0000.000
39A39ASP-1-0.805-0.87937.031-8.691-8.6910.0000.0000.0000.000
40A40ALA00.0530.00035.446-0.174-0.1740.0000.0000.0000.000
41A41LYS10.8660.94332.4239.1999.1990.0000.0000.0000.000
42A42THR0-0.007-0.02632.417-0.285-0.2850.0000.0000.0000.000
43A43ILE0-0.0010.00633.434-0.196-0.1960.0000.0000.0000.000
44A44ARG10.9600.97129.01910.06510.0650.0000.0000.0000.000
45A45GLY00.0160.02228.956-0.387-0.3870.0000.0000.0000.000
46A46PHE0-0.016-0.02229.513-0.106-0.1060.0000.0000.0000.000
47A47MET0-0.105-0.02027.402-0.080-0.0800.0000.0000.0000.000
48A48GLY00.0610.02625.237-0.543-0.5430.0000.0000.0000.000
49A49PRO0-0.057-0.01625.860-0.177-0.1770.0000.0000.0000.000
50A50PRO00.0260.01527.7010.2080.2080.0000.0000.0000.000
51A51LEU00.0130.02430.1650.1780.1780.0000.0000.0000.000
52A52GLU-1-0.864-0.95233.291-9.236-9.2360.0000.0000.0000.000
53A53SER0-0.033-0.01731.7840.3210.3210.0000.0000.0000.000
54A54SER00.0260.01031.9090.0920.0920.0000.0000.0000.000
55A55PHE00.0340.00834.2840.2080.2080.0000.0000.0000.000
56A56ALA0-0.016-0.00837.0040.2410.2410.0000.0000.0000.000
57A57THR0-0.092-0.05034.9140.1610.1610.0000.0000.0000.000
58A58CYS0-0.100-0.04338.1730.1340.1340.0000.0000.0000.000
59A59LEU00.0110.01841.1770.1960.1960.0000.0000.0000.000
60A60SER00.0200.01542.847-0.107-0.1070.0000.0000.0000.000
61A61LYS10.9570.96842.3587.0847.0840.0000.0000.0000.000
62A62ASP-1-0.921-0.97643.675-6.903-6.9030.0000.0000.0000.000
63A63GLN00.002-0.00445.4070.0160.0160.0000.0000.0000.000
64A64ILE0-0.0300.01238.750-0.117-0.1170.0000.0000.0000.000
65A65SER0-0.010-0.01240.620-0.188-0.1880.0000.0000.0000.000
66A66GLU-1-0.865-0.92242.125-6.847-6.8470.0000.0000.0000.000
67A67ALA00.0400.01540.826-0.035-0.0350.0000.0000.0000.000
68A68VAL00.006-0.00136.706-0.149-0.1490.0000.0000.0000.000
69A69GLN0-0.036-0.01638.726-0.026-0.0260.0000.0000.0000.000
70A70ILE00.0230.01741.235-0.053-0.0530.0000.0000.0000.000
71A71TYR00.0630.04432.294-0.034-0.0340.0000.0000.0000.000
72A72ARG10.8850.91831.7979.5179.5170.0000.0000.0000.000
73A73SER0-0.106-0.04837.684-0.004-0.0040.0000.0000.0000.000
74A74TYR0-0.016-0.03637.5840.1420.1420.0000.0000.0000.000
75A75TYR00.0190.00330.097-0.171-0.1710.0000.0000.0000.000
76A76LYS10.8880.93533.0499.3089.3080.0000.0000.0000.000
77A77ALA0-0.0140.01036.5760.0140.0140.0000.0000.0000.000
78A78LYS10.8530.92238.1708.0258.0250.0000.0000.0000.000
79A79GLY00.0230.00835.065-0.144-0.1440.0000.0000.0000.000
80A80ILE0-0.038-0.01830.745-0.267-0.2670.0000.0000.0000.000
81A81TYR00.002-0.00331.566-0.282-0.2820.0000.0000.0000.000
82A82GLU-1-0.846-0.87133.792-8.405-8.4050.0000.0000.0000.000
83A83ALA0-0.006-0.01128.671-0.137-0.1370.0000.0000.0000.000
84A84GLN0-0.0120.00627.7160.5500.5500.0000.0000.0000.000
85A85LEU00.0620.03322.390-0.328-0.3280.0000.0000.0000.000
86A86PHE00.0140.01521.0960.5180.5180.0000.0000.0000.000
87A87PRO0-0.009-0.02922.147-0.164-0.1640.0000.0000.0000.000
88A88GLN0-0.063-0.04217.9770.0560.0560.0000.0000.0000.000
89A89ILE00.0030.02517.416-0.876-0.8760.0000.0000.0000.000
90A90ILE0-0.0050.00317.666-0.575-0.5750.0000.0000.0000.000
91A91ASP-1-0.799-0.90516.559-16.883-16.8830.0000.0000.0000.000
92A92LEU0-0.034-0.01511.309-0.819-0.8190.0000.0000.0000.000
93A93LEU00.0050.00112.931-1.363-1.3630.0000.0000.0000.000
94A94GLU-1-0.934-0.95114.548-14.801-14.8010.0000.0000.0000.000
95A95GLU-1-0.919-0.96010.829-20.018-20.0180.0000.0000.0000.000
96A96LEU0-0.027-0.0068.011-1.453-1.4530.0000.0000.0000.000
97A97SER0-0.014-0.03110.355-0.508-0.5080.0000.0000.0000.000
98A98SER0-0.095-0.04611.0310.3560.3560.0000.0000.0000.000
99A99SER0-0.064-0.0347.1850.0720.0720.0000.0000.0000.000
101A101PRO00.0150.03710.0791.2781.2780.0000.0000.0000.000
102A102LEU0-0.011-0.01011.554-1.920-1.9200.0000.0000.0000.000
103A103TYR00.000-0.01113.3571.1931.1930.0000.0000.0000.000
104A104ILE0-0.041-0.01215.434-0.584-0.5840.0000.0000.0000.000
105A105THR00.013-0.00416.3700.0900.0900.0000.0000.0000.000
106A106THR0-0.033-0.02018.592-0.061-0.0610.0000.0000.0000.000
107A107THR00.0380.00221.3320.0320.0320.0000.0000.0000.000
108A108LYS10.8070.90424.41512.29912.2990.0000.0000.0000.000
109A109ASP-1-0.827-0.89626.140-10.456-10.4560.0000.0000.0000.000
110A110THR00.0190.00025.793-0.151-0.1510.0000.0000.0000.000
111A111SER0-0.026-0.01327.328-0.181-0.1810.0000.0000.0000.000
112A112THR00.0400.01129.6400.1590.1590.0000.0000.0000.000
113A113ALA00.0280.01724.176-0.029-0.0290.0000.0000.0000.000
114A114GLN00.0070.01825.375-0.074-0.0740.0000.0000.0000.000
115A115ASP-1-0.899-0.96026.979-9.872-9.8720.0000.0000.0000.000
116A116MET0-0.032-0.00626.001-0.045-0.0450.0000.0000.0000.000
117A117ALA00.0370.01923.542-0.028-0.0280.0000.0000.0000.000
118A118LYS10.8650.94025.20810.75610.7560.0000.0000.0000.000
119A119ASN0-0.027-0.02628.0170.2980.2980.0000.0000.0000.000
120A120LEU0-0.046-0.01726.0170.2190.2190.0000.0000.0000.000
121A121GLU-1-0.965-0.97425.580-10.932-10.9320.0000.0000.0000.000
122A122ILE00.0360.01520.959-0.348-0.3480.0000.0000.0000.000
123A123HIS0-0.056-0.04421.514-0.487-0.4870.0000.0000.0000.000
124A124HIS0-0.036-0.01921.1160.0970.0970.0000.0000.0000.000
125A125PHE00.0100.01317.365-0.012-0.0120.0000.0000.0000.000
126A126PHE0-0.027-0.02016.202-1.021-1.0210.0000.0000.0000.000
127A127ASP-1-0.888-0.93217.103-16.384-16.3840.0000.0000.0000.000
128A128GLY0-0.036-0.03119.0450.6140.6140.0000.0000.0000.000
129A129ILE0-0.053-0.02419.215-0.607-0.6070.0000.0000.0000.000
130A130TYR0-0.021-0.03119.3501.0171.0170.0000.0000.0000.000
131A131GLY00.0350.00221.696-0.453-0.4530.0000.0000.0000.000
132A132SER00.013-0.00224.3210.0680.0680.0000.0000.0000.000
133A133SER0-0.032-0.02826.5920.4270.4270.0000.0000.0000.000
134A134PRO0-0.036-0.03929.195-0.047-0.0470.0000.0000.0000.000
135A135GLU-1-0.921-0.94625.983-11.870-11.8700.0000.0000.0000.000
136A136ALA00.0100.00623.839-0.260-0.2600.0000.0000.0000.000
137A137PRO0-0.031-0.01425.826-0.004-0.0040.0000.0000.0000.000
138A138HIS0-0.016-0.01124.021-0.099-0.0990.0000.0000.0000.000
139A139LYS10.8090.89718.18315.79415.7940.0000.0000.0000.000
140A140ALA00.0470.02218.344-0.638-0.6380.0000.0000.0000.000
141A141ASP-1-0.853-0.91719.310-13.404-13.4040.0000.0000.0000.000
142A142VAL0-0.011-0.00320.102-0.162-0.1620.0000.0000.0000.000
143A143ILE0-0.0180.00414.505-0.267-0.2670.0000.0000.0000.000
144A144HIS00.0270.00216.910-0.862-0.8620.0000.0000.0000.000
145A145GLN0-0.033-0.00618.812-0.259-0.2590.0000.0000.0000.000
146A146ALA00.0200.02416.8640.1900.1900.0000.0000.0000.000
147A147LEU0-0.027-0.01412.511-0.429-0.4290.0000.0000.0000.000
148A148GLN0-0.034-0.01516.3450.6630.6630.0000.0000.0000.000
149A149THR0-0.062-0.03919.6310.6240.6240.0000.0000.0000.000
150A150HIS0-0.0120.01316.7250.7400.7400.0000.0000.0000.000
151A151GLN0-0.076-0.03517.147-0.651-0.6510.0000.0000.0000.000
152A152LEU0-0.0320.00312.018-0.575-0.5750.0000.0000.0000.000
153A153ALA00.0140.00412.5281.0181.0180.0000.0000.0000.000
154A154PRO00.009-0.00511.595-1.639-1.6390.0000.0000.0000.000
155A155GLU-1-0.861-0.9457.962-27.723-27.7230.0000.0000.0000.000
156A156GLN0-0.033-0.0046.651-4.785-4.7850.0000.0000.0000.000
157A157ALA00.0370.0248.354-0.617-0.6170.0000.0000.0000.000
158A158ILE0-0.014-0.0095.028-3.674-3.6740.0000.0000.0000.000
159A159ILE0-0.0160.0068.1202.3452.3450.0000.0000.0000.000
160A160ILE0-0.0030.0079.578-1.169-1.1690.0000.0000.0000.000
161A161GLY00.0360.00412.0201.7021.7020.0000.0000.0000.000
162A162ASP-1-0.748-0.85715.300-16.186-16.1860.0000.0000.0000.000
163A163THR00.002-0.02318.1161.0591.0590.0000.0000.0000.000
164A164LYS10.8820.91918.31512.12412.1240.0000.0000.0000.000
165A165PHE00.016-0.00819.309-0.142-0.1420.0000.0000.0000.000
166A166ASP-1-0.758-0.85815.590-17.444-17.4440.0000.0000.0000.000
167A167MET0-0.0300.00013.359-1.445-1.4450.0000.0000.0000.000
168A168LEU0-0.053-0.02115.207-0.509-0.5090.0000.0000.0000.000
169A169GLY00.0700.03817.057-0.235-0.2350.0000.0000.0000.000
170A170ALA00.0040.02011.553-0.127-0.1270.0000.0000.0000.000
171A171ARG10.9220.95713.33617.33117.3310.0000.0000.0000.000
172A172GLU-1-0.972-1.00214.769-14.830-14.8300.0000.0000.0000.000
173A173THR0-0.047-0.04514.5050.1540.1540.0000.0000.0000.000
174A174GLY0-0.020-0.00212.6440.2450.2450.0000.0000.0000.000
175A175ILE0-0.0490.0069.395-1.901-1.9010.0000.0000.0000.000
177A177LYS10.8120.8957.46229.59129.5910.0000.0000.0000.000
178A178LEU0-0.028-0.0086.895-1.204-1.2040.0000.0000.0000.000
179A179ALA00.0210.0069.7782.2272.2270.0000.0000.0000.000
180A180ILE0-0.038-0.01213.071-0.769-0.7690.0000.0000.0000.000
181A181THR0-0.032-0.05215.4971.2181.2180.0000.0000.0000.000
182A182TRP0-0.046-0.02114.5900.4140.4140.0000.0000.0000.000
183A183GLY00.0180.02320.5240.5260.5260.0000.0000.0000.000
184A184PHE0-0.096-0.05321.8760.6410.6410.0000.0000.0000.000
185A185GLY0-0.0250.00321.8540.5460.5460.0000.0000.0000.000
186A186GLU-1-0.930-0.96121.806-12.523-12.5230.0000.0000.0000.000
187A187GLN00.020-0.00918.162-1.101-1.1010.0000.0000.0000.000
188A188ALA0-0.031-0.01919.567-0.515-0.5150.0000.0000.0000.000
189A189ASP-1-0.869-0.93121.407-13.138-13.1380.0000.0000.0000.000
190A190LEU00.0000.00016.247-0.445-0.4450.0000.0000.0000.000
191A191LEU00.0310.00715.230-0.957-0.9570.0000.0000.0000.000
192A192ASN0-0.057-0.02317.155-0.336-0.3360.0000.0000.0000.000
193A193TYR0-0.013-0.00516.2580.7020.7020.0000.0000.0000.000
194A194GLN0-0.081-0.03713.212-1.105-1.1050.0000.0000.0000.000
195A195PRO00.0160.02210.972-1.250-1.2500.0000.0000.0000.000
196A196ASP-1-0.845-0.9255.687-36.037-36.0370.0000.0000.0000.000
197A197TYR0-0.050-0.0335.995-3.989-3.9890.0000.0000.0000.000
198A198ILE0-0.024-0.0187.9912.2732.2730.0000.0000.0000.000
199A199ALA00.0090.02611.596-0.298-0.2980.0000.0000.0000.000
200A200HIS0-0.070-0.04913.8022.1212.1210.0000.0000.0000.000
201A201LYS10.9230.95416.01716.21216.2120.0000.0000.0000.000
202A202PRO00.0510.02314.871-1.362-1.3620.0000.0000.0000.000
203A203LEU00.0230.00313.060-1.372-1.3720.0000.0000.0000.000
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