FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 3MVYL

Calculation Name: 4F21-A-Xray547

Preferred Name:

Target Type:

Ligand Name: n-((1r,2s)-2-allyl-4-oxocyclobutyl)-4-methylbenzenesulfonamide, bound form

Ligand 3-letter code: 0S1

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 4F21

Chain ID: A

ChEMBL ID:

UniProt ID: Q5NI32

Base Structure: X-ray

Registration Date: 2025-10-05

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Homology Modeling
Water No
Procedure Manual calculation
Remarks
ac.sh, 23 2024 Oct; Missing atoms/residues were imported from a 100% homology model, which was constructed by MOE.
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 224
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -2782135.847569
FMO2-HF: Nuclear repulsion 2694063.912079
FMO2-HF: Total energy -88071.93549
FMO2-MP2: Total energy -88325.612396


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:-1:ASN)


Summations of interaction energy for fragment #1(A:-1:ASN)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-47.012-44.7516.005-3.794-4.4720.039
Interaction energy analysis for fragmet #1(A:-1:ASN)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.863 / q_NPA : 0.908
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A1MET00.0020.0143.572-7.798-5.946-0.001-0.845-1.006-0.003
97A95LYS10.9430.9712.00931.98432.3936.006-2.949-3.4660.042
4A2ASN00.0000.0236.1120.3480.3480.0000.0000.0000.000
5A3TYR00.009-0.0177.852-1.311-1.3110.0000.0000.0000.000
6A4GLU-1-0.870-0.91711.967-17.414-17.4140.0000.0000.0000.000
7A5LEU0-0.074-0.03913.150-0.675-0.6750.0000.0000.0000.000
8A6MET0-0.0050.01416.4690.7350.7350.0000.0000.0000.000
9A7GLU-1-0.750-0.85717.465-15.978-15.9780.0000.0000.0000.000
10A8PRO0-0.060-0.01120.1100.3760.3760.0000.0000.0000.000
11A9ALA00.0030.00423.4410.0450.0450.0000.0000.0000.000
12A10LYS10.8080.90026.4279.7169.7160.0000.0000.0000.000
13A11GLN0-0.013-0.00922.599-0.063-0.0630.0000.0000.0000.000
14A12ALA00.0020.00219.6100.1940.1940.0000.0000.0000.000
15A13ARG10.7920.86521.15810.39010.3900.0000.0000.0000.000
16A14PHE00.0100.00021.165-0.070-0.0700.0000.0000.0000.000
17A15CYS0-0.055-0.01416.285-0.701-0.7010.0000.0000.0000.000
18A16VAL00.0160.01818.8300.2620.2620.0000.0000.0000.000
19A17ILE0-0.014-0.00712.261-0.804-0.8040.0000.0000.0000.000
20A18TRP00.0320.01316.0030.5580.5580.0000.0000.0000.000
21A19LEU0-0.010-0.01712.798-0.884-0.8840.0000.0000.0000.000
22A20HIS10.8780.93815.83318.99318.9930.0000.0000.0000.000
23A21GLY00.0390.01515.891-1.138-1.1380.0000.0000.0000.000
24A22LEU00.0110.02213.2360.3400.3400.0000.0000.0000.000
25A23GLY00.033-0.00316.4090.3070.3070.0000.0000.0000.000
26A24ALA0-0.011-0.00320.157-0.029-0.0290.0000.0000.0000.000
27A25ASP-1-0.753-0.85321.186-14.131-14.1310.0000.0000.0000.000
28A26GLY0-0.0140.00219.674-0.087-0.0870.0000.0000.0000.000
29A27HIS0-0.045-0.03220.288-0.026-0.0260.0000.0000.0000.000
30A28ASP-1-0.894-0.95420.909-15.537-15.5370.0000.0000.0000.000
31A29PHE00.019-0.00621.0130.5190.5190.0000.0000.0000.000
32A30VAL00.0190.01719.0860.1100.1100.0000.0000.0000.000
33A31ASP-1-0.871-0.94021.709-11.530-11.5300.0000.0000.0000.000
34A32ILE0-0.023-0.01323.3890.4870.4870.0000.0000.0000.000
35A33VAL0-0.008-0.01123.3030.3810.3810.0000.0000.0000.000
36A34ASN0-0.053-0.03026.2280.2240.2240.0000.0000.0000.000
37A35TYR0-0.101-0.03728.6560.6400.6400.0000.0000.0000.000
38A36PHE0-0.021-0.02025.2790.0460.0460.0000.0000.0000.000
39A37ASP-1-0.891-0.94231.077-8.822-8.8220.0000.0000.0000.000
40A38VAL0-0.045-0.01529.3300.1920.1920.0000.0000.0000.000
41A39SER00.0260.00730.094-0.035-0.0350.0000.0000.0000.000
42A40LEU00.015-0.00326.023-0.277-0.2770.0000.0000.0000.000
43A41ASP-1-0.801-0.90825.976-10.024-10.0240.0000.0000.0000.000
44A42GLU-1-0.814-0.86024.824-10.559-10.5590.0000.0000.0000.000
45A43ILE0-0.018-0.01121.961-0.348-0.3480.0000.0000.0000.000
46A44ARG10.8080.87415.20516.28616.2860.0000.0000.0000.000
47A45PHE00.0350.00618.7280.0080.0080.0000.0000.0000.000
48A46ILE0-0.014-0.01011.992-0.744-0.7440.0000.0000.0000.000
49A47PHE00.0510.02115.2940.2120.2120.0000.0000.0000.000
50A48PRO0-0.044-0.03010.307-0.818-0.8180.0000.0000.0000.000
51A49HIS00.0440.02211.0940.8380.8380.0000.0000.0000.000
52A50ALA00.0690.02911.623-1.338-1.3380.0000.0000.0000.000
53A51ASP-1-0.863-0.9358.520-28.855-28.8550.0000.0000.0000.000
54A52ILE0-0.011-0.0187.849-3.784-3.7840.0000.0000.0000.000
55A53ILE0-0.0360.0059.405-0.206-0.2060.0000.0000.0000.000
56A54PRO0-0.0210.01011.1140.1280.1280.0000.0000.0000.000
57A55VAL00.0780.02212.7511.1941.1940.0000.0000.0000.000
58A56THR0-0.080-0.07415.2070.9700.9700.0000.0000.0000.000
59A57ILE0-0.045-0.00715.5030.9900.9900.0000.0000.0000.000
60A58ASN00.0760.02618.6430.4380.4380.0000.0000.0000.000
61A59MET0-0.0140.02020.5330.9090.9090.0000.0000.0000.000
62A60GLY00.0090.00222.0380.5850.5850.0000.0000.0000.000
63A61MET00.0100.00923.7670.6710.6710.0000.0000.0000.000
64A62GLN00.006-0.01825.1690.2490.2490.0000.0000.0000.000
65A63MET00.0000.01625.8360.1630.1630.0000.0000.0000.000
66A64ARG10.8790.93827.13510.81910.8190.0000.0000.0000.000
67A65ALA0-0.0070.00829.6200.3360.3360.0000.0000.0000.000
68A66TRP0-0.0050.00531.4450.1130.1130.0000.0000.0000.000
69A67TYR0-0.002-0.01933.811-0.201-0.2010.0000.0000.0000.000
70A68ASP-1-0.879-0.92535.219-8.110-8.1100.0000.0000.0000.000
71A69ILE0-0.037-0.02030.5010.1320.1320.0000.0000.0000.000
72A70LYS10.9440.95334.3937.8907.8900.0000.0000.0000.000
73A71SER0-0.0010.00634.1350.1950.1950.0000.0000.0000.000
74A72LEU00.011-0.00727.585-0.090-0.0900.0000.0000.0000.000
75A73ASP-1-0.876-0.94126.270-11.440-11.4400.0000.0000.0000.000
76A74ALA00.0420.03529.828-0.081-0.0810.0000.0000.0000.000
77A75ASN0-0.039-0.02132.5020.1480.1480.0000.0000.0000.000
78A76SER00.0150.01031.708-0.112-0.1120.0000.0000.0000.000
79A77LEU0-0.024-0.00527.403-0.118-0.1180.0000.0000.0000.000
80A78ASN00.0480.00526.285-0.462-0.4620.0000.0000.0000.000
81A79ARG10.9280.98725.63310.64910.6490.0000.0000.0000.000
82A80VAL0-0.115-0.07123.696-0.148-0.1480.0000.0000.0000.000
83A81VAL00.0790.04120.403-0.036-0.0360.0000.0000.0000.000
84A82ASP-1-0.806-0.87115.299-19.306-19.3060.0000.0000.0000.000
85A83VAL00.0450.01516.973-0.704-0.7040.0000.0000.0000.000
86A84GLU-1-0.863-0.93012.105-22.711-22.7110.0000.0000.0000.000
87A85GLY00.0230.03212.320-2.085-2.0850.0000.0000.0000.000
88A86ILE0-0.009-0.00912.578-1.063-1.0630.0000.0000.0000.000
89A87ASN0-0.030-0.03113.329-0.560-0.5600.0000.0000.0000.000
90A88SER0-0.022-0.0328.332-1.868-1.8680.0000.0000.0000.000
91A89SER0-0.049-0.0428.235-3.508-3.5080.0000.0000.0000.000
92A90ILE00.0550.0189.733-0.891-0.8910.0000.0000.0000.000
93A91ALA0-0.023-0.0067.9140.1210.1210.0000.0000.0000.000
94A92LYS10.7700.8995.00934.92334.9230.0000.0000.0000.000
95A93VAL00.0420.0246.6940.1860.1860.0000.0000.0000.000
96A94ASN00.0070.0079.5091.7411.7410.0000.0000.0000.000
98A96LEU0-0.0040.0116.520-0.279-0.2790.0000.0000.0000.000
99A97ILE00.0180.0128.6321.2201.2200.0000.0000.0000.000
100A98ASP-1-0.812-0.8888.292-20.674-20.6740.0000.0000.0000.000
101A99SER0-0.063-0.0176.7941.4071.4070.0000.0000.0000.000
102A100GLN00.0550.0258.6992.2152.2150.0000.0000.0000.000
103A101VAL00.0130.01912.3840.9490.9490.0000.0000.0000.000
104A102ASN0-0.104-0.06410.3101.4511.4510.0000.0000.0000.000
105A103GLN0-0.077-0.03711.258-0.005-0.0050.0000.0000.0000.000
106A104GLY00.0030.01213.9150.6030.6030.0000.0000.0000.000
107A105ILE0-0.042-0.01116.0100.7200.7200.0000.0000.0000.000
108A106ALA00.0350.02016.517-0.671-0.6710.0000.0000.0000.000
109A107SER00.060-0.00116.145-0.012-0.0120.0000.0000.0000.000
110A108GLU-1-0.958-0.99918.011-12.780-12.7800.0000.0000.0000.000
111A109ASN0-0.039-0.00820.4930.8240.8240.0000.0000.0000.000
112A110ILE0-0.0100.00114.774-0.319-0.3190.0000.0000.0000.000
113A111ILE0-0.029-0.00118.8260.1740.1740.0000.0000.0000.000
114A112LEU0-0.046-0.02014.855-0.897-0.8970.0000.0000.0000.000
115A113ALA00.0420.01918.2020.7510.7510.0000.0000.0000.000
116A114GLY0-0.012-0.01518.247-1.109-1.1090.0000.0000.0000.000
117A115PHE00.0150.02119.7710.6480.6480.0000.0000.0000.000
118A116SER0-0.052-0.04820.765-0.505-0.5050.0000.0000.0000.000
119A117GLN0-0.053-0.03617.674-0.444-0.4440.0000.0000.0000.000
120A118GLY00.0150.00216.712-0.793-0.7930.0000.0000.0000.000
121A119GLY00.0270.01417.280-0.525-0.5250.0000.0000.0000.000
122A120ILE0-0.028-0.01418.2710.2630.2630.0000.0000.0000.000
123A121ILE0-0.010-0.00212.5400.2690.2690.0000.0000.0000.000
124A122ALA00.0240.03915.698-0.458-0.4580.0000.0000.0000.000
125A123THR00.0410.01217.4770.3810.3810.0000.0000.0000.000
126A124TYR0-0.008-0.04417.8020.4290.4290.0000.0000.0000.000
127A125THR0-0.005-0.00713.267-0.420-0.4200.0000.0000.0000.000
128A126ALA00.0320.01315.9120.1640.1640.0000.0000.0000.000
129A127ILE0-0.042-0.01318.5890.3590.3590.0000.0000.0000.000
130A128THR0-0.049-0.03617.1360.1680.1680.0000.0000.0000.000
131A129SER0-0.0340.00016.047-0.786-0.7860.0000.0000.0000.000
132A130GLN00.012-0.00512.9911.1901.1900.0000.0000.0000.000
133A131ARG10.7900.87411.28519.66419.6640.0000.0000.0000.000
134A132LYS10.9550.99718.62411.36911.3690.0000.0000.0000.000
135A133LEU00.0030.01116.082-0.494-0.4940.0000.0000.0000.000
136A134GLY00.0520.01920.0300.6710.6710.0000.0000.0000.000
137A135GLY0-0.029-0.02121.3050.6330.6330.0000.0000.0000.000
138A136ILE0-0.053-0.01721.006-0.727-0.7270.0000.0000.0000.000
139A137MET00.0070.01122.0790.7350.7350.0000.0000.0000.000
140A138ALA0-0.0060.00922.675-0.585-0.5850.0000.0000.0000.000
141A139LEU00.0270.01623.7540.5320.5320.0000.0000.0000.000
142A140SER00.0370.00924.990-0.238-0.2380.0000.0000.0000.000
143A141THR0-0.041-0.03222.195-0.248-0.2480.0000.0000.0000.000
144A142TYR00.024-0.00422.3460.4980.4980.0000.0000.0000.000
145A143LEU00.000-0.00422.923-0.545-0.5450.0000.0000.0000.000
146A144PRO00.0400.03721.5730.4170.4170.0000.0000.0000.000
147A145ALA00.0340.01121.462-0.459-0.4590.0000.0000.0000.000
148A146TRP00.0290.01423.552-0.235-0.2350.0000.0000.0000.000
149A147ASP-1-0.850-0.93625.613-10.530-10.5300.0000.0000.0000.000
150A148ASN0-0.045-0.01521.2300.2240.2240.0000.0000.0000.000
151A149PHE0-0.013-0.01817.268-0.444-0.4440.0000.0000.0000.000
152A150LYS10.8820.95322.49110.32810.3280.0000.0000.0000.000
153A151GLY0-0.001-0.00225.4490.2860.2860.0000.0000.0000.000
154A152LYS10.8650.93817.50715.97915.9790.0000.0000.0000.000
155A153ILE0-0.0110.00720.977-0.427-0.4270.0000.0000.0000.000
156A154THR0-0.020-0.02520.0120.4710.4710.0000.0000.0000.000
157A155SER0-0.008-0.02723.0510.0560.0560.0000.0000.0000.000
158A156ILE0-0.0170.00021.3060.3310.3310.0000.0000.0000.000
159A157ASN00.0570.02419.8580.3750.3750.0000.0000.0000.000
160A158LYS10.8510.94924.14810.53210.5320.0000.0000.0000.000
161A159GLY00.0220.01427.5450.2840.2840.0000.0000.0000.000
162A160LEU0-0.093-0.02622.0870.1230.1230.0000.0000.0000.000
163A161PRO00.0050.00125.6690.1770.1770.0000.0000.0000.000
164A162ILE00.005-0.00125.043-0.512-0.5120.0000.0000.0000.000
165A163LEU00.0040.01426.5550.4660.4660.0000.0000.0000.000
166A164VAL0-0.024-0.01826.760-0.505-0.5050.0000.0000.0000.000
167A165CYS0-0.0050.02228.1750.4320.4320.0000.0000.0000.000
168A166HIS0-0.007-0.01828.662-0.481-0.4810.0000.0000.0000.000
169A167GLY00.0400.04131.2460.2960.2960.0000.0000.0000.000
170A168THR0-0.009-0.03933.452-0.008-0.0080.0000.0000.0000.000
171A169ASP-1-0.855-0.92436.816-7.909-7.9090.0000.0000.0000.000
172A170ASP-1-0.767-0.86630.228-10.486-10.4860.0000.0000.0000.000
173A171GLN0-0.004-0.01333.659-0.037-0.0370.0000.0000.0000.000
174A172VAL0-0.073-0.02027.288-0.058-0.0580.0000.0000.0000.000
175A173LEU0-0.075-0.04425.412-0.279-0.2790.0000.0000.0000.000
176A174PRO00.0800.05029.4970.0160.0160.0000.0000.0000.000
177A175GLU-1-0.710-0.82132.190-8.692-8.6920.0000.0000.0000.000
178A176VAL0-0.037-0.01633.570-0.067-0.0670.0000.0000.0000.000
179A177LEU0-0.015-0.01929.472-0.069-0.0690.0000.0000.0000.000
180A178GLY00.0960.05529.463-0.378-0.3780.0000.0000.0000.000
181A179HIS10.8020.88530.5378.6388.6380.0000.0000.0000.000
182A180ASP-1-0.833-0.90429.745-10.349-10.3490.0000.0000.0000.000
183A181LEU0-0.025-0.01224.259-0.139-0.1390.0000.0000.0000.000
184A182SER0-0.013-0.02128.4050.0110.0110.0000.0000.0000.000
185A183ASP-1-0.881-0.95630.770-8.702-8.7020.0000.0000.0000.000
186A184LYS10.7600.87927.83610.90510.9050.0000.0000.0000.000
187A185LEU00.0050.00724.754-0.124-0.1240.0000.0000.0000.000
188A186LYS10.9720.99528.7998.4708.4700.0000.0000.0000.000
189A187VAL0-0.059-0.03232.2920.1550.1550.0000.0000.0000.000
190A188SER0-0.017-0.00327.821-0.038-0.0380.0000.0000.0000.000
191A189GLY0-0.028-0.01529.427-0.174-0.1740.0000.0000.0000.000
192A190PHE0-0.028-0.01924.265-0.061-0.0610.0000.0000.0000.000
193A191ALA00.0170.00128.8720.0450.0450.0000.0000.0000.000
194A192ASN0-0.041-0.01229.102-0.184-0.1840.0000.0000.0000.000
195A193GLU-1-0.844-0.90330.889-8.869-8.8690.0000.0000.0000.000
196A194TYR0-0.054-0.04131.572-0.366-0.3660.0000.0000.0000.000
197A195LYS10.8700.93032.7499.3149.3140.0000.0000.0000.000
198A196HIS00.0020.01433.286-0.400-0.4000.0000.0000.0000.000
199A197TYR00.020-0.03232.4350.1540.1540.0000.0000.0000.000
200A198VAL0-0.007-0.00536.648-0.090-0.0900.0000.0000.0000.000
201A199GLY00.0040.01339.6020.0270.0270.0000.0000.0000.000
202A200MET0-0.074-0.00831.384-0.041-0.0410.0000.0000.0000.000
203A201GLN0-0.027-0.02533.977-0.054-0.0540.0000.0000.0000.000
204A202HIS10.7650.85925.09911.33711.3370.0000.0000.0000.000
205A203SER0-0.011-0.01929.023-0.184-0.1840.0000.0000.0000.000
206A204VAL00.0320.01426.493-0.145-0.1450.0000.0000.0000.000
207A205CYS0-0.051-0.00329.7980.2370.2370.0000.0000.0000.000
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209A207GLU-1-0.906-0.95434.716-8.119-8.1190.0000.0000.0000.000
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