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About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: 3QK6L

Calculation Name: 1HWG-A-Xray372

Preferred Name: Growth hormone receptor

Target Type: SINGLE PROTEIN

Ligand Name:

ligand 3-letter code:

PDB ID: 1HWG

Chain ID: A

ChEMBL ID: CHEMBL1976

UniProt ID: P10912

Base Structure: X-ray

Registration Date: 2023-03-13

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHSide
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 188
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2167166.956882
FMO2-HF: Nuclear repulsion 2089755.07832
FMO2-HF: Total energy -77411.878562
FMO2-MP2: Total energy -77636.945147


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:PHE)


Summations of interaction energy for fragment #1(A:1:PHE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-3.8280.2541.293-2.271-3.103-0.006
Interaction energy analysis for fragmet #1(A:1:PHE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.029 / q_NPA : 0.019
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3THR00.0330.0122.484-5.273-1.3071.294-2.261-2.999-0.006
4A4ILE00.000-0.0034.8040.3760.492-0.001-0.010-0.1040.000
5A5PRO00.0060.0157.6910.0650.0650.0000.0000.0000.000
6A6LEU00.0640.01210.7600.0390.0390.0000.0000.0000.000
7A7SER00.0600.03012.5770.0270.0270.0000.0000.0000.000
8A8ARG10.9930.9879.3680.9500.9500.0000.0000.0000.000
9A9LEU0-0.0230.0169.8670.0290.0290.0000.0000.0000.000
10A10PHE00.0630.00213.2720.0590.0590.0000.0000.0000.000
11A11ASP-1-0.869-0.92916.808-0.334-0.3340.0000.0000.0000.000
12A12ASN0-0.061-0.03814.5060.0810.0810.0000.0000.0000.000
13A13ALA00.0080.00916.8230.0430.0430.0000.0000.0000.000
14A14MET0-0.021-0.01418.4500.0340.0340.0000.0000.0000.000
15A15LEU00.0100.00920.4690.0300.0300.0000.0000.0000.000
16A16ARG10.7770.86618.6570.2640.2640.0000.0000.0000.000
17A17ALA00.009-0.00522.3020.0220.0220.0000.0000.0000.000
18A18HIS0-0.036-0.01124.2660.0240.0240.0000.0000.0000.000
19A19ARG10.8280.91925.5020.1370.1370.0000.0000.0000.000
20A20LEU0-0.002-0.00924.3270.0150.0150.0000.0000.0000.000
21A21HIS0-0.039-0.02627.9410.0210.0210.0000.0000.0000.000
22A22GLN00.006-0.00730.1160.0030.0030.0000.0000.0000.000
23A23LEU0-0.008-0.00629.5180.0090.0090.0000.0000.0000.000
24A24ALA0-0.0160.01432.2590.0090.0090.0000.0000.0000.000
25A25PHE0-0.022-0.01633.9920.0070.0070.0000.0000.0000.000
26A26ASP-1-0.819-0.89535.788-0.090-0.0900.0000.0000.0000.000
27A27THR0-0.045-0.03835.8580.0060.0060.0000.0000.0000.000
28A28TYR0-0.091-0.08438.0230.0040.0040.0000.0000.0000.000
29A29GLN0-0.084-0.06239.8230.0000.0000.0000.0000.0000.000
30A30GLU-1-0.750-0.83740.978-0.060-0.0600.0000.0000.0000.000
31A31PHE0-0.0040.00042.4360.0040.0040.0000.0000.0000.000
32A32GLU-1-0.698-0.79544.014-0.064-0.0640.0000.0000.0000.000
33A33GLU-1-0.904-0.94545.907-0.060-0.0600.0000.0000.0000.000
34A34ALA0-0.0300.00247.5130.0030.0030.0000.0000.0000.000
35A35TYR0-0.069-0.03245.8360.0040.0040.0000.0000.0000.000
36A36ILE0-0.087-0.04146.8720.0010.0010.0000.0000.0000.000
37A37PRO00.0640.05949.868-0.002-0.0020.0000.0000.0000.000
38A38LYS10.9320.93450.3270.0560.0560.0000.0000.0000.000
39A39GLU-1-0.894-0.93452.587-0.043-0.0430.0000.0000.0000.000
40A40GLN00.0710.02251.4270.0000.0000.0000.0000.0000.000
41A41LYS10.8190.91544.6900.0670.0670.0000.0000.0000.000
42A42TYR0-0.025-0.03749.149-0.003-0.0030.0000.0000.0000.000
43A43SER00.0180.01051.4070.0000.0000.0000.0000.0000.000
44A44PHE00.0380.01843.1720.0000.0000.0000.0000.0000.000
45A45LEU0-0.009-0.01544.677-0.001-0.0010.0000.0000.0000.000
46A46GLN0-0.058-0.01747.760-0.001-0.0010.0000.0000.0000.000
47A47ASN0-0.079-0.03250.0550.0030.0030.0000.0000.0000.000
48A48PRO00.0260.00849.000-0.002-0.0020.0000.0000.0000.000
49A49GLN00.0080.01043.1110.0030.0030.0000.0000.0000.000
50A50THR00.011-0.02545.489-0.002-0.0020.0000.0000.0000.000
51A51SER0-0.0690.00943.815-0.003-0.0030.0000.0000.0000.000
52A52LEU0-0.062-0.01641.046-0.004-0.0040.0000.0000.0000.000
53A53CYS0-0.034-0.01336.372-0.001-0.0010.0000.0000.0000.000
54A54PHE00.0530.01432.757-0.001-0.0010.0000.0000.0000.000
55A55SER0-0.035-0.05032.5300.0010.0010.0000.0000.0000.000
56A56GLU-1-0.819-0.90833.649-0.098-0.0980.0000.0000.0000.000
57A57SER0-0.046-0.01234.6180.0020.0020.0000.0000.0000.000
58A58ILE0-0.047-0.01529.341-0.002-0.0020.0000.0000.0000.000
59A59PRO0-0.0040.01131.6790.0010.0010.0000.0000.0000.000
60A60THR0-0.012-0.01230.684-0.010-0.0100.0000.0000.0000.000
61A61PRO0-0.057-0.02430.6880.0060.0060.0000.0000.0000.000
62A62SER0-0.025-0.01233.7120.0000.0000.0000.0000.0000.000
63A63ASN00.0290.01236.069-0.001-0.0010.0000.0000.0000.000
64A64ARG10.9600.98133.1700.1360.1360.0000.0000.0000.000
65A65GLU-1-0.932-0.96334.169-0.115-0.1150.0000.0000.0000.000
66A66GLU-1-0.764-0.88134.845-0.118-0.1180.0000.0000.0000.000
67A67THR0-0.020-0.03529.553-0.008-0.0080.0000.0000.0000.000
68A68GLN0-0.043-0.03129.723-0.005-0.0050.0000.0000.0000.000
69A69GLN00.0120.01130.779-0.008-0.0080.0000.0000.0000.000
70A70LYS10.8670.97027.8100.1480.1480.0000.0000.0000.000
71A71SER00.0370.01424.706-0.014-0.0140.0000.0000.0000.000
72A72ASN00.050-0.01220.3420.0280.0280.0000.0000.0000.000
73A73LEU00.0220.01218.363-0.002-0.0020.0000.0000.0000.000
74A74GLU-1-0.867-0.93021.337-0.174-0.1740.0000.0000.0000.000
75A75LEU00.0090.00823.8780.0070.0070.0000.0000.0000.000
76A76LEU00.0120.02417.4020.0050.0050.0000.0000.0000.000
77A77ARG10.9110.95121.3670.1980.1980.0000.0000.0000.000
78A78ILE00.006-0.01322.6690.0110.0110.0000.0000.0000.000
79A79SER00.000-0.01022.5370.0150.0150.0000.0000.0000.000
80A80LEU0-0.038-0.00319.1400.0070.0070.0000.0000.0000.000
81A81LEU0-0.038-0.01722.4320.0140.0140.0000.0000.0000.000
82A82LEU00.0110.01825.7830.0130.0130.0000.0000.0000.000
83A83ILE00.0200.01922.2080.0110.0110.0000.0000.0000.000
84A84GLN0-0.047-0.05221.4580.0170.0170.0000.0000.0000.000
85A85SER0-0.041-0.03525.4840.0140.0140.0000.0000.0000.000
86A86TRP0-0.017-0.04128.1800.0140.0140.0000.0000.0000.000
87A87LEU0-0.0300.00123.4440.0070.0070.0000.0000.0000.000
88A88GLU-1-0.873-0.93227.816-0.072-0.0720.0000.0000.0000.000
89A89PRO00.0000.00431.1990.0060.0060.0000.0000.0000.000
90A90VAL00.0480.03129.8160.0050.0050.0000.0000.0000.000
91A91GLN0-0.049-0.01732.5600.0080.0080.0000.0000.0000.000
92A92PHE0-0.029-0.02934.6990.0050.0050.0000.0000.0000.000
93A93LEU0-0.0080.00534.7320.0030.0030.0000.0000.0000.000
94A94ARG10.8580.91535.0220.0480.0480.0000.0000.0000.000
95A95SER0-0.007-0.01637.7240.0020.0020.0000.0000.0000.000
96A96VAL0-0.0070.00839.4610.0020.0020.0000.0000.0000.000
97A97PHE0-0.003-0.03033.4280.0000.0000.0000.0000.0000.000
98A98ALA0-0.034-0.00138.1500.0010.0010.0000.0000.0000.000
99A99ASN0-0.091-0.05640.0950.0040.0040.0000.0000.0000.000
100A100SER0-0.044-0.02938.799-0.001-0.0010.0000.0000.0000.000
101A101LEU0-0.055-0.02840.1170.0020.0020.0000.0000.0000.000
102A102VAL00.0120.00734.996-0.002-0.0020.0000.0000.0000.000
103A103TYR00.0300.00630.076-0.002-0.0020.0000.0000.0000.000
104A104GLY0-0.007-0.01131.136-0.008-0.0080.0000.0000.0000.000
105A105ALA00.0180.01631.312-0.006-0.0060.0000.0000.0000.000
106A106SER00.0270.01232.0870.0050.0050.0000.0000.0000.000
107A107ASP-1-0.768-0.87231.602-0.064-0.0640.0000.0000.0000.000
108A108SER0-0.0020.00129.613-0.006-0.0060.0000.0000.0000.000
109A109ASN00.0050.00427.334-0.009-0.0090.0000.0000.0000.000
110A110VAL00.0170.00326.638-0.013-0.0130.0000.0000.0000.000
111A111TYR0-0.0200.00024.968-0.015-0.0150.0000.0000.0000.000
112A112ASP-1-0.869-0.94623.276-0.103-0.1030.0000.0000.0000.000
113A113LEU0-0.054-0.02921.985-0.022-0.0220.0000.0000.0000.000
114A114LEU0-0.0140.00122.180-0.023-0.0230.0000.0000.0000.000
115A115LYS10.8520.91020.0260.1380.1380.0000.0000.0000.000
116A116ASP-1-0.809-0.86817.804-0.301-0.3010.0000.0000.0000.000
117A117LEU00.000-0.00117.180-0.045-0.0450.0000.0000.0000.000
118A118GLU-1-0.803-0.88318.219-0.215-0.2150.0000.0000.0000.000
119A119GLU-1-0.920-0.95112.360-0.344-0.3440.0000.0000.0000.000
120A120GLY00.0350.02813.795-0.077-0.0770.0000.0000.0000.000
121A121ILE0-0.023-0.02514.388-0.057-0.0570.0000.0000.0000.000
122A122GLN0-0.031-0.01414.545-0.028-0.0280.0000.0000.0000.000
123A123THR0-0.050-0.0368.981-0.079-0.0790.0000.0000.0000.000
124A124LEU0-0.042-0.02711.357-0.086-0.0860.0000.0000.0000.000
125A125MET0-0.055-0.01813.607-0.003-0.0030.0000.0000.0000.000
126A126GLY0-0.0070.00911.4710.0290.0290.0000.0000.0000.000
127A127ARG10.8210.9088.0871.1821.1820.0000.0000.0000.000
128A128LEU00.006-0.00211.7610.0210.0210.0000.0000.0000.000
129A129GLU-1-0.870-0.89415.120-0.274-0.2740.0000.0000.0000.000
130A130ASP-1-0.836-0.92616.855-0.400-0.4000.0000.0000.0000.000
131A131GLY00.0180.01719.8270.0280.0280.0000.0000.0000.000
132A132SER0-0.020-0.02722.5950.0170.0170.0000.0000.0000.000
133A133PRO00.0320.03622.845-0.011-0.0110.0000.0000.0000.000
134A134ARG10.8520.92316.3030.3500.3500.0000.0000.0000.000
135A135THR0-0.076-0.05823.6820.0120.0120.0000.0000.0000.000
136A136GLY00.0770.02427.396-0.001-0.0010.0000.0000.0000.000
137A137GLN0-0.032-0.02129.213-0.002-0.0020.0000.0000.0000.000
138A138ILE00.0570.04226.2390.0010.0010.0000.0000.0000.000
139A139PHE00.016-0.00321.937-0.006-0.0060.0000.0000.0000.000
140A140LYS10.8660.94325.9250.1220.1220.0000.0000.0000.000
141A141GLN00.0320.01227.9830.0110.0110.0000.0000.0000.000
142A142THR0-0.052-0.02727.437-0.009-0.0090.0000.0000.0000.000
143A143TYR00.0510.01526.656-0.002-0.0020.0000.0000.0000.000
144A144SER0-0.004-0.01129.0740.0050.0050.0000.0000.0000.000
145A145LYS10.8360.92930.0070.0970.0970.0000.0000.0000.000
146A146PHE00.0480.02434.6250.0010.0010.0000.0000.0000.000
147A147ASP-1-0.809-0.89137.157-0.057-0.0570.0000.0000.0000.000
148A148THR0-0.045-0.01637.9990.0010.0010.0000.0000.0000.000
149A149ASN0-0.068-0.04040.8660.0050.0050.0000.0000.0000.000
150A150SER0-0.011-0.00944.5790.0000.0000.0000.0000.0000.000
151A151HIS0-0.012-0.01644.8840.0040.0040.0000.0000.0000.000
152A152ASN0-0.079-0.03648.7960.0020.0020.0000.0000.0000.000
153A153ASP-1-0.849-0.92245.972-0.048-0.0480.0000.0000.0000.000
154A154ASP-1-0.817-0.91349.482-0.042-0.0420.0000.0000.0000.000
155A155ALA0-0.004-0.00346.903-0.002-0.0020.0000.0000.0000.000
156A156LEU00.0100.01246.253-0.003-0.0030.0000.0000.0000.000
157A157LEU00.0380.01046.146-0.003-0.0030.0000.0000.0000.000
158A158LYS10.9000.96041.9930.0490.0490.0000.0000.0000.000
159A159ASN0-0.039-0.03241.843-0.004-0.0040.0000.0000.0000.000
160A160TYR0-0.041-0.04641.331-0.004-0.0040.0000.0000.0000.000
161A161GLY00.0200.00042.047-0.004-0.0040.0000.0000.0000.000
162A162LEU0-0.037-0.01236.890-0.005-0.0050.0000.0000.0000.000
163A163LEU00.0110.00437.082-0.006-0.0060.0000.0000.0000.000
164A164TYR0-0.036-0.02437.627-0.007-0.0070.0000.0000.0000.000
165A166PHE00.0240.02029.789-0.007-0.0070.0000.0000.0000.000
166A167ARG10.9670.98632.7500.0860.0860.0000.0000.0000.000
167A168LYS10.8520.91333.6770.0870.0870.0000.0000.0000.000
168A169ASP-1-0.747-0.84230.584-0.124-0.1240.0000.0000.0000.000
169A170MET0-0.041-0.01927.796-0.016-0.0160.0000.0000.0000.000
170A171ASP-1-0.880-0.92028.847-0.146-0.1460.0000.0000.0000.000
171A172LYS10.8540.92530.0600.1130.1130.0000.0000.0000.000
172A173VAL00.0060.00824.020-0.013-0.0130.0000.0000.0000.000
173A174GLU-1-0.811-0.89325.483-0.193-0.1930.0000.0000.0000.000
174A175THR0-0.023-0.01226.174-0.013-0.0130.0000.0000.0000.000
175A176PHE0-0.030-0.04225.761-0.005-0.0050.0000.0000.0000.000
176A177LEU00.002-0.00220.188-0.019-0.0190.0000.0000.0000.000
177A178ARG10.9490.97022.6010.2260.2260.0000.0000.0000.000
178A179ILE0-0.036-0.02024.443-0.008-0.0080.0000.0000.0000.000
179A180VAL00.0000.00319.952-0.004-0.0040.0000.0000.0000.000
180A181GLN00.0000.02319.9160.0050.0050.0000.0000.0000.000
181A182CYS0-0.111-0.07321.3620.0000.0000.0000.0000.0000.000
182A183ARG10.8240.92023.1490.2310.2310.0000.0000.0000.000
183A184SER0-0.029-0.01417.978-0.009-0.0090.0000.0000.0000.000
184A185VAL0-0.097-0.04917.154-0.037-0.0370.0000.0000.0000.000
185A186GLU-1-0.870-0.93819.658-0.238-0.2380.0000.0000.0000.000
186A187GLY0-0.007-0.00222.150-0.015-0.0150.0000.0000.0000.000
187A188SER0-0.074-0.03521.5590.0150.0150.0000.0000.0000.000
188A190GLY00.0440.03827.0860.0100.0100.0000.0000.0000.000