FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-04-23

All entries: 37539

Number of unique PDB entries: 7791

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FMODB ID: 493RN

Calculation Name: 2EIA-B-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 2EIA

Chain ID: B

ChEMBL ID:

UniProt ID: P69732

Base Structure: X-ray

Registration Date: 2023-06-21

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 203
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2124990.012964
FMO2-HF: Nuclear repulsion 2042567.668318
FMO2-HF: Total energy -82422.344645
FMO2-MP2: Total energy -82659.837234


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(B:17:PRO)


Summations of interaction energy for fragment #1(B:17:PRO)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-1.26-2.05710.158-5.149-4.2150.005
Interaction energy analysis for fragmet #1(B:17:PRO)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.036 / q_NPA : -0.012
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3B19GLY00.0510.0373.829-0.0911.227-0.005-0.719-0.5950.004
4B20TYR0-0.020-0.0071.979-0.485-2.86310.158-4.378-3.4030.001
5B21THR00.0590.0233.868-0.840-0.5770.005-0.052-0.2170.000
6B22THR00.0090.0035.876-0.116-0.1160.0000.0000.0000.000
7B23TRP0-0.015-0.0037.081-0.110-0.1100.0000.0000.0000.000
8B24VAL0-0.0010.0046.998-0.147-0.1470.0000.0000.0000.000
9B25ASN0-0.025-0.0279.385-0.107-0.1070.0000.0000.0000.000
10B26THR00.0290.01611.442-0.057-0.0570.0000.0000.0000.000
11B27ILE0-0.065-0.02612.021-0.048-0.0480.0000.0000.0000.000
12B28GLN0-0.065-0.03312.849-0.031-0.0310.0000.0000.0000.000
13B29THR00.0000.01415.284-0.019-0.0190.0000.0000.0000.000
14B30ASN0-0.056-0.03017.172-0.005-0.0050.0000.0000.0000.000
15B31GLY00.0250.02417.472-0.015-0.0150.0000.0000.0000.000
16B32LEU00.000-0.01914.4410.0210.0210.0000.0000.0000.000
17B33LEU0-0.076-0.02217.138-0.019-0.0190.0000.0000.0000.000
18B34ASN00.0820.04819.256-0.008-0.0080.0000.0000.0000.000
19B35GLU-1-0.889-0.95719.5370.1390.1390.0000.0000.0000.000
20B36ALA0-0.016-0.00317.5530.0130.0130.0000.0000.0000.000
21B37SER0-0.008-0.03415.0990.0380.0380.0000.0000.0000.000
22B38GLN00.023-0.00115.3220.0370.0370.0000.0000.0000.000
23B39ASN00.0130.00517.1270.0150.0150.0000.0000.0000.000
24B40LEU0-0.030-0.01010.7100.0250.0250.0000.0000.0000.000
25B41PHE00.0400.02112.0640.0570.0570.0000.0000.0000.000
26B42GLY00.0190.01913.5140.0210.0210.0000.0000.0000.000
27B43ILE0-0.025-0.02112.922-0.013-0.0130.0000.0000.0000.000
28B44LEU0-0.066-0.0298.1280.0110.0110.0000.0000.0000.000
29B45SER00.0150.00410.1320.0490.0490.0000.0000.0000.000
30B46VAL0-0.039-0.01612.150-0.056-0.0560.0000.0000.0000.000
31B47ASP-1-0.896-0.96013.0300.1530.1530.0000.0000.0000.000
32B48CYS0-0.056-0.0038.8380.0450.0450.0000.0000.0000.000
33B49THR00.008-0.00910.719-0.051-0.0510.0000.0000.0000.000
34B50SER00.011-0.04412.2670.0660.0660.0000.0000.0000.000
35B51GLU-1-0.886-0.93110.290-0.096-0.0960.0000.0000.0000.000
36B52GLU-1-0.849-0.9117.3730.2450.2450.0000.0000.0000.000
37B53MET0-0.048-0.0148.9040.2060.2060.0000.0000.0000.000
38B54ASN00.0650.06311.2200.0650.0650.0000.0000.0000.000
39B55ALA00.0670.0516.926-0.037-0.0370.0000.0000.0000.000
40B56PHE0-0.049-0.0196.7630.1430.1430.0000.0000.0000.000
41B57LEU00.0300.0068.651-0.093-0.0930.0000.0000.0000.000
42B58ASP-1-0.900-0.95710.4050.0410.0410.0000.0000.0000.000
43B59VAL0-0.113-0.0495.215-0.073-0.0730.0000.0000.0000.000
44B60VAL00.0110.0238.448-0.006-0.0060.0000.0000.0000.000
45B61PRO00.0330.00311.319-0.058-0.0580.0000.0000.0000.000
46B62GLY0-0.065-0.04512.966-0.024-0.0240.0000.0000.0000.000
47B63GLN00.0560.03515.7510.0090.0090.0000.0000.0000.000
48B64ALA00.000-0.01218.550-0.004-0.0040.0000.0000.0000.000
49B65GLY00.0700.05020.3850.0040.0040.0000.0000.0000.000
50B66GLN00.0350.01119.170-0.005-0.0050.0000.0000.0000.000
51B67LYS10.8950.94213.788-0.100-0.1000.0000.0000.0000.000
52B68GLN0-0.006-0.00818.5520.0020.0020.0000.0000.0000.000
53B69ILE00.0020.02721.846-0.001-0.0010.0000.0000.0000.000
54B70LEU0-0.018-0.01316.8020.0020.0020.0000.0000.0000.000
55B71LEU00.014-0.00417.3790.0050.0050.0000.0000.0000.000
56B72ASP-1-0.816-0.89420.9980.0530.0530.0000.0000.0000.000
57B73ALA0-0.072-0.03022.942-0.004-0.0040.0000.0000.0000.000
58B74ILE0-0.003-0.02118.3010.0000.0000.0000.0000.0000.000
59B75ASP-1-0.868-0.92922.7120.0530.0530.0000.0000.0000.000
60B76LYS10.9290.97425.343-0.062-0.0620.0000.0000.0000.000
61B77ILE0-0.047-0.01424.684-0.005-0.0050.0000.0000.0000.000
62B78ALA0-0.012-0.02224.318-0.004-0.0040.0000.0000.0000.000
63B79ASP-1-0.870-0.94526.3120.0360.0360.0000.0000.0000.000
64B80ASP-1-0.944-0.97129.7010.0450.0450.0000.0000.0000.000
65B81TRP0-0.028-0.02628.085-0.001-0.0010.0000.0000.0000.000
66B82ASP-1-0.804-0.92729.0520.0320.0320.0000.0000.0000.000
67B83ASN0-0.110-0.04731.215-0.005-0.0050.0000.0000.0000.000
68B84ARG10.8950.94833.393-0.047-0.0470.0000.0000.0000.000
69B85HIS10.8010.91231.555-0.041-0.0410.0000.0000.0000.000
70B86PRO00.0550.05732.6880.0000.0000.0000.0000.0000.000
71B87LEU0-0.018-0.03230.573-0.002-0.0020.0000.0000.0000.000
72B88PRO0-0.013-0.01734.182-0.001-0.0010.0000.0000.0000.000
73B89ASN0-0.0160.00134.4190.0000.0000.0000.0000.0000.000
74B90ALA00.0240.02830.172-0.002-0.0020.0000.0000.0000.000
75B91PRO0-0.005-0.00128.660-0.001-0.0010.0000.0000.0000.000
76B92LEU00.0280.00626.6720.0030.0030.0000.0000.0000.000
77B93VAL0-0.010-0.01123.163-0.001-0.0010.0000.0000.0000.000
78B94ALA0-0.0040.01322.7500.0030.0030.0000.0000.0000.000
79B95PRO0-0.015-0.01124.724-0.006-0.0060.0000.0000.0000.000
80B96PRO00.0440.03024.4660.0020.0020.0000.0000.0000.000
81B97GLN00.0720.02024.936-0.001-0.0010.0000.0000.0000.000
82B98GLY00.0180.02026.6670.0010.0010.0000.0000.0000.000
83B99PRO0-0.020-0.01327.3360.0010.0010.0000.0000.0000.000
84B100ILE00.0150.02622.683-0.002-0.0020.0000.0000.0000.000
85B101PRO00.0180.00426.6930.0050.0050.0000.0000.0000.000
86B102MET00.0130.00524.5300.0000.0000.0000.0000.0000.000
87B103THR00.0460.02826.6340.0030.0030.0000.0000.0000.000
88B104ALA00.0840.04325.1630.0050.0050.0000.0000.0000.000
89B105ARG10.8540.92622.9990.0040.0040.0000.0000.0000.000
90B106PHE0-0.010-0.02821.6620.0010.0010.0000.0000.0000.000
91B107ILE00.0170.04020.8860.0040.0040.0000.0000.0000.000
92B108ARG10.9010.96518.708-0.057-0.0570.0000.0000.0000.000
93B109GLY0-0.012-0.02917.3080.0070.0070.0000.0000.0000.000
94B110LEU00.0220.01117.536-0.016-0.0160.0000.0000.0000.000
95B111GLY0-0.054-0.00618.541-0.012-0.0120.0000.0000.0000.000
96B112VAL0-0.068-0.03418.747-0.005-0.0050.0000.0000.0000.000
97B113PRO00.0470.05017.4110.0020.0020.0000.0000.0000.000
98B114ARG10.9710.9729.8590.2910.2910.0000.0000.0000.000
99B115GLU-1-0.934-0.99114.764-0.057-0.0570.0000.0000.0000.000
100B116ARG10.7800.87816.5650.0220.0220.0000.0000.0000.000
101B117GLN0-0.069-0.05115.0500.0410.0410.0000.0000.0000.000
102B118MET0-0.047-0.03011.9860.0060.0060.0000.0000.0000.000
103B119GLU-1-0.835-0.88215.942-0.016-0.0160.0000.0000.0000.000
104B120PRO00.0930.03219.6170.0100.0100.0000.0000.0000.000
105B121ALA0-0.105-0.04521.344-0.001-0.0010.0000.0000.0000.000
106B122PHE00.011-0.01417.0370.0010.0010.0000.0000.0000.000
107B123ASP-1-0.810-0.94019.5600.0670.0670.0000.0000.0000.000
108B124GLN0-0.002-0.01520.5270.0100.0100.0000.0000.0000.000
109B125PHE0-0.0180.01220.5500.0040.0040.0000.0000.0000.000
110B126ARG10.8991.00915.256-0.102-0.1020.0000.0000.0000.000
111B127GLN0-0.031-0.02318.0470.0160.0160.0000.0000.0000.000
112B128THR0-0.029-0.02419.8300.0050.0050.0000.0000.0000.000
113B129TYR0-0.056-0.05615.558-0.003-0.0030.0000.0000.0000.000
114B130ARG10.8920.93615.464-0.240-0.2400.0000.0000.0000.000
115B131GLN0-0.026-0.01817.7180.0090.0090.0000.0000.0000.000
116B132TRP00.0830.05620.944-0.004-0.0040.0000.0000.0000.000
117B133ILE00.0310.01915.030-0.001-0.0010.0000.0000.0000.000
118B134ILE0-0.069-0.03418.0110.0040.0040.0000.0000.0000.000
119B135GLU-1-0.917-0.97120.0030.0950.0950.0000.0000.0000.000
120B136ALA0-0.0070.00420.453-0.009-0.0090.0000.0000.0000.000
121B137MET0-0.037-0.02516.3410.0050.0050.0000.0000.0000.000
122B138SER0-0.0050.02120.897-0.012-0.0120.0000.0000.0000.000
123B139GLU-1-0.901-0.97024.1170.0720.0720.0000.0000.0000.000
124B140GLY00.0380.01023.315-0.008-0.0080.0000.0000.0000.000
125B141ILE0-0.035-0.03121.257-0.007-0.0070.0000.0000.0000.000
126B142LYS10.8880.93824.905-0.087-0.0870.0000.0000.0000.000
127B143VAL0-0.056-0.00727.370-0.008-0.0080.0000.0000.0000.000
128B144MET0-0.035-0.02924.092-0.008-0.0080.0000.0000.0000.000
129B145ILE00.0000.01527.563-0.004-0.0040.0000.0000.0000.000
130B146GLY0-0.044-0.01929.994-0.004-0.0040.0000.0000.0000.000
131B147LYS10.9030.97229.820-0.061-0.0610.0000.0000.0000.000
132B148PRO0-0.039-0.02431.8780.0010.0010.0000.0000.0000.000
133B149LYS10.9590.97429.781-0.058-0.0580.0000.0000.0000.000
134B150ALA00.1550.08831.415-0.001-0.0010.0000.0000.0000.000
135B151GLN00.0120.00133.290-0.005-0.0050.0000.0000.0000.000
136B152ASN0-0.088-0.05335.1110.0000.0000.0000.0000.0000.000
137B153ILE0-0.0180.02534.603-0.002-0.0020.0000.0000.0000.000
138B154ARG10.8500.94537.514-0.030-0.0300.0000.0000.0000.000
139B155GLN00.0440.06141.2650.0000.0000.0000.0000.0000.000
140B156GLY00.0150.00043.7830.0000.0000.0000.0000.0000.000
141B157ALA00.017-0.02046.340-0.001-0.0010.0000.0000.0000.000
142B158LYS10.9350.96549.591-0.018-0.0180.0000.0000.0000.000
143B159GLU-1-0.813-0.85342.5550.0230.0230.0000.0000.0000.000
144B160PRO00.0920.05245.7430.0000.0000.0000.0000.0000.000
145B161TYR00.0470.00643.3160.0010.0010.0000.0000.0000.000
146B162PRO00.0280.00043.1000.0010.0010.0000.0000.0000.000
147B163GLU-1-0.869-0.93541.1980.0170.0170.0000.0000.0000.000
148B164PHE0-0.094-0.03639.9050.0020.0020.0000.0000.0000.000
149B165VAL00.007-0.00638.3140.0020.0020.0000.0000.0000.000
150B166ASP-1-0.938-0.94936.3530.0230.0230.0000.0000.0000.000
151B167ARG10.8200.86635.305-0.026-0.0260.0000.0000.0000.000
152B168LEU0-0.037-0.02834.4960.0040.0040.0000.0000.0000.000
153B169LEU00.005-0.00733.4090.0030.0030.0000.0000.0000.000
154B170SER00.0040.00831.2610.0040.0040.0000.0000.0000.000
155B171GLN0-0.003-0.00628.9330.0040.0040.0000.0000.0000.000
156B172ILE00.0360.05628.7480.0050.0050.0000.0000.0000.000
157B173LYS10.8990.96425.452-0.030-0.0300.0000.0000.0000.000
158B174SER0-0.128-0.09525.2620.0030.0030.0000.0000.0000.000
159B175GLU-1-0.861-0.93924.1920.0690.0690.0000.0000.0000.000
160B176GLY0-0.045-0.00522.0210.0070.0070.0000.0000.0000.000
161B177HIS0-0.025-0.01421.9850.0090.0090.0000.0000.0000.000
162B178PRO00.003-0.00622.513-0.007-0.0070.0000.0000.0000.000
163B179GLN00.032-0.00723.955-0.002-0.0020.0000.0000.0000.000
164B180GLU-1-0.891-0.93426.7390.0310.0310.0000.0000.0000.000
165B181ILE00.011-0.00326.230-0.003-0.0030.0000.0000.0000.000
166B182SER0-0.032-0.00527.273-0.002-0.0020.0000.0000.0000.000
167B183LYS10.9730.97829.192-0.025-0.0250.0000.0000.0000.000
168B184PHE00.0190.02032.193-0.001-0.0010.0000.0000.0000.000
169B185LEU0-0.002-0.00629.715-0.002-0.0020.0000.0000.0000.000
170B186THR0-0.0090.00332.771-0.002-0.0020.0000.0000.0000.000
171B187ASP-1-0.855-0.93735.1910.0240.0240.0000.0000.0000.000
172B188THR0-0.010-0.01236.875-0.002-0.0020.0000.0000.0000.000
173B189LEU0-0.011-0.01234.629-0.001-0.0010.0000.0000.0000.000
174B190THR0-0.049-0.02838.178-0.001-0.0010.0000.0000.0000.000
175B191ILE00.0530.01640.363-0.001-0.0010.0000.0000.0000.000
176B192GLN0-0.044-0.02040.6460.0010.0010.0000.0000.0000.000
177B193ASN0-0.024-0.04138.7000.0000.0000.0000.0000.0000.000
178B194ALA00.0690.04742.1930.0000.0000.0000.0000.0000.000
179B195ASN0-0.046-0.03544.8840.0000.0000.0000.0000.0000.000
180B196GLU-1-0.858-0.98447.9520.0210.0210.0000.0000.0000.000
181B197GLU-1-0.927-0.95850.9060.0140.0140.0000.0000.0000.000
182B198CYS0-0.102-0.03747.867-0.001-0.0010.0000.0000.0000.000
183B199ARG10.8410.95945.629-0.023-0.0230.0000.0000.0000.000
184B200ASN0-0.112-0.05248.9830.0000.0000.0000.0000.0000.000
185B201ALA00.0400.02551.7780.0000.0000.0000.0000.0000.000
186B202MET00.0430.02645.6700.0000.0000.0000.0000.0000.000
187B203ARG10.8780.96349.830-0.018-0.0180.0000.0000.0000.000
188B204HIS0-0.031-0.03351.8670.0000.0000.0000.0000.0000.000
189B205LEU0-0.0410.00347.1630.0000.0000.0000.0000.0000.000
190B206ARG10.8900.94045.320-0.015-0.0150.0000.0000.0000.000
191B207PRO0-0.010-0.01040.5430.0000.0000.0000.0000.0000.000
192B208GLU-1-0.864-0.94040.3560.0210.0210.0000.0000.0000.000
193B209ASP-1-0.837-0.89841.4440.0150.0150.0000.0000.0000.000
194B210THR00.0280.00941.7900.0010.0010.0000.0000.0000.000
195B211LEU00.0320.01638.1250.0010.0010.0000.0000.0000.000
196B212GLU-1-0.876-0.96141.8210.0120.0120.0000.0000.0000.000
197B213GLU-1-0.926-0.95544.7490.0110.0110.0000.0000.0000.000
198B214LYS10.8190.90640.811-0.021-0.0210.0000.0000.0000.000
199B215MET0-0.046-0.05442.9950.0000.0000.0000.0000.0000.000
200B216TYR0-0.059-0.02346.105-0.001-0.0010.0000.0000.0000.000
201B217ALA00.0030.00449.212-0.001-0.0010.0000.0000.0000.000
202B219ARG10.9220.97150.195-0.009-0.0090.0000.0000.0000.000
203B220ASP-1-0.973-0.97551.4690.0110.0110.0000.0000.0000.000