FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: 49M2N

Calculation Name: 1FCU-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1FCU

Chain ID: A

ChEMBL ID:

UniProt ID: Q08169

Base Structure: X-ray

Registration Date: 2023-09-20

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHSide
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 322
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 22 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -5325688.608547
FMO2-HF: Nuclear repulsion 5192611.505648
FMO2-HF: Total energy -133077.102898
FMO2-MP2: Total energy -133465.92196


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:10:GLU)


Summations of interaction energy for fragment #1(A:10:GLU)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-153.276-157.15128.291-12.763-11.6530.133
Interaction energy analysis for fragmet #1(A:10:GLU)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : -1 / q_Mulliken : -0.859 / q_NPA : -0.908
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A12ASN0-0.028-0.0121.793-17.097-18.62514.623-6.265-6.8300.047
4A13VAL0-0.0040.0004.396-3.315-3.276-0.001-0.014-0.0240.000
5A14TYR00.0460.0215.8962.3132.3130.0000.0000.0000.000
6A15TRP00.022-0.00210.581-1.769-1.7690.0000.0000.0000.000
7A16ASN00.0030.00214.191-0.476-0.4760.0000.0000.0000.000
8A17VAL00.0460.02916.823-1.038-1.0380.0000.0000.0000.000
9A18PRO0-0.017-0.00319.8010.2080.2080.0000.0000.0000.000
10A19THR00.023-0.02421.062-0.594-0.5940.0000.0000.0000.000
11A20PHE00.0550.02822.970-0.611-0.6110.0000.0000.0000.000
12A21MET0-0.078-0.02124.460-0.543-0.5430.0000.0000.0000.000
13A22CYS0-0.060-0.02526.387-0.266-0.2660.0000.0000.0000.000
14A23HIS0-0.0090.00922.808-0.866-0.8660.0000.0000.0000.000
15A24LYS10.8780.94728.007-10.335-10.3350.0000.0000.0000.000
16A25TYR0-0.061-0.04330.914-0.384-0.3840.0000.0000.0000.000
17A26GLY00.0200.01130.423-0.185-0.1850.0000.0000.0000.000
18A27LEU0-0.100-0.04526.7370.1700.1700.0000.0000.0000.000
19A28ARG10.9290.92923.733-12.254-12.2540.0000.0000.0000.000
20A29PHE00.0090.00520.4620.3530.3530.0000.0000.0000.000
21A30GLU-1-0.682-0.81519.55313.64713.6470.0000.0000.0000.000
22A31GLU-1-0.794-0.88418.38714.43914.4390.0000.0000.0000.000
23A32VAL0-0.038-0.01214.4620.6340.6340.0000.0000.0000.000
24A33SER00.0340.00413.2240.7300.7300.0000.0000.0000.000
25A34GLU-1-0.949-0.96613.81615.78915.7890.0000.0000.0000.000
26A35LYS10.8270.91016.279-14.237-14.2370.0000.0000.0000.000
27A36TYR0-0.067-0.07014.256-0.184-0.1840.0000.0000.0000.000
28A37GLY00.0290.03510.5710.6340.6340.0000.0000.0000.000
29A38ILE0-0.062-0.0219.1022.5012.5010.0000.0000.0000.000
30A39LEU00.0300.0255.193-1.811-1.728-0.0010.000-0.0820.000
31A40GLN0-0.031-0.0479.877-1.123-1.1230.0000.0000.0000.000
32A41ASN0-0.0220.01613.2811.2791.2790.0000.0000.0000.000
33A42TRP00.1270.02515.103-1.427-1.4270.0000.0000.0000.000
34A43MET0-0.098-0.05817.067-0.912-0.9120.0000.0000.0000.000
35A44ASP-1-0.731-0.81718.49514.85114.8510.0000.0000.0000.000
36A45LYS10.8680.95519.258-14.865-14.8650.0000.0000.0000.000
37A46PHE00.003-0.00918.7000.6580.6580.0000.0000.0000.000
38A47ARG10.8130.89518.347-13.672-13.6720.0000.0000.0000.000
39A48GLY0-0.012-0.01416.805-0.989-0.9890.0000.0000.0000.000
40A49GLU-1-0.792-0.88812.55220.93020.9300.0000.0000.0000.000
41A50GLU-1-0.849-0.9308.44937.79637.7960.0000.0000.0000.000
42A51ILE0-0.060-0.02510.9461.5181.5180.0000.0000.0000.000
43A52ALA00.0120.00513.527-1.784-1.7840.0000.0000.0000.000
44A53ILE00.0180.04317.1220.3010.3010.0000.0000.0000.000
45A54LEU0-0.024-0.01419.281-0.833-0.8330.0000.0000.0000.000
46A55TYR00.0260.00122.5440.2880.2880.0000.0000.0000.000
47A56ASP-1-0.839-0.87325.18210.30010.3000.0000.0000.0000.000
48A57PRO00.0010.01124.119-0.330-0.3300.0000.0000.0000.000
49A58GLY00.008-0.00727.352-0.074-0.0740.0000.0000.0000.000
50A59MET0-0.084-0.05429.984-0.385-0.3850.0000.0000.0000.000
51A60PHE00.0770.04026.081-0.333-0.3330.0000.0000.0000.000
52A61PRO0-0.0140.01132.023-0.156-0.1560.0000.0000.0000.000
53A62ALA00.0090.01633.7140.2650.2650.0000.0000.0000.000
54A63LEU0-0.031-0.01835.641-0.288-0.2880.0000.0000.0000.000
55A64LEU0-0.012-0.01035.3750.1670.1670.0000.0000.0000.000
56A65LYS10.9510.98539.247-7.929-7.9290.0000.0000.0000.000
57A66ASP-1-0.828-0.91241.4557.3577.3570.0000.0000.0000.000
58A67PRO0-0.002-0.00243.216-0.075-0.0750.0000.0000.0000.000
59A68ASN0-0.069-0.04745.550-0.208-0.2080.0000.0000.0000.000
60A69GLY00.0180.01846.965-0.155-0.1550.0000.0000.0000.000
61A70ASN0-0.048-0.01846.961-0.003-0.0030.0000.0000.0000.000
62A71VAL0-0.003-0.00342.4270.1850.1850.0000.0000.0000.000
63A72VAL00.0270.01341.565-0.117-0.1170.0000.0000.0000.000
64A73ALA00.007-0.00340.7810.2230.2230.0000.0000.0000.000
65A74ARG10.7840.86231.598-9.998-9.9980.0000.0000.0000.000
66A75ASN0-0.030-0.04235.207-0.126-0.1260.0000.0000.0000.000
67A76GLY00.1010.04538.1680.1390.1390.0000.0000.0000.000
68A77GLY0-0.0140.00738.862-0.189-0.1890.0000.0000.0000.000
69A78VAL0-0.027-0.02137.1830.2740.2740.0000.0000.0000.000
70A79PRO00.0340.01733.881-0.139-0.1390.0000.0000.0000.000
71A80GLN0-0.002-0.01436.0260.1740.1740.0000.0000.0000.000
72A81LEU0-0.050-0.02338.892-0.171-0.1710.0000.0000.0000.000
73A82GLY00.0170.02937.353-0.103-0.1030.0000.0000.0000.000
74A83ASN0-0.040-0.01938.1740.1650.1650.0000.0000.0000.000
75A84LEU00.0750.01631.2000.1270.1270.0000.0000.0000.000
76A85THR00.0260.02433.7170.2500.2500.0000.0000.0000.000
77A86LYS10.9660.97734.990-8.024-8.0240.0000.0000.0000.000
78A87HIS00.007-0.00328.439-0.241-0.2410.0000.0000.0000.000
79A88LEU00.0340.01228.8010.2350.2350.0000.0000.0000.000
80A89GLN0-0.028-0.00230.5430.3190.3190.0000.0000.0000.000
81A90VAL00.0350.02131.8030.1240.1240.0000.0000.0000.000
82A91PHE00.0240.00122.9020.2080.2080.0000.0000.0000.000
83A92ARG10.8400.90627.357-9.639-9.6390.0000.0000.0000.000
84A93ASP-1-0.836-0.90728.09710.31010.3100.0000.0000.0000.000
85A94HIS0-0.016-0.00327.1040.4580.4580.0000.0000.0000.000
86A95LEU00.0010.00721.9430.3010.3010.0000.0000.0000.000
87A96ILE0-0.016-0.01723.9930.4510.4510.0000.0000.0000.000
88A97ASN0-0.018-0.01625.7030.1930.1930.0000.0000.0000.000
89A98GLN0-0.023-0.00223.1240.3770.3770.0000.0000.0000.000
90A99ILE0-0.0050.00518.3010.5160.5160.0000.0000.0000.000
91A100PRO00.0240.02621.4740.0650.0650.0000.0000.0000.000
92A101ASP-1-0.842-0.90118.10416.79416.7940.0000.0000.0000.000
93A102LYS10.9360.94519.546-11.872-11.8720.0000.0000.0000.000
94A103SER0-0.078-0.05117.0800.3330.3330.0000.0000.0000.000
95A104PHE0-0.004-0.00414.0401.1051.1050.0000.0000.0000.000
96A105PRO00.0120.00910.681-0.406-0.4060.0000.0000.0000.000
97A106GLY00.0360.03110.1373.2813.2810.0000.0000.0000.000
98A107VAL0-0.033-0.0219.149-0.132-0.1320.0000.0000.0000.000
99A108GLY00.0280.00111.696-1.775-1.7750.0000.0000.0000.000
100A109VAL0-0.018-0.00814.787-0.059-0.0590.0000.0000.0000.000
101A110ILE0-0.008-0.01417.030-1.047-1.0470.0000.0000.0000.000
102A111ASH0-0.064-0.08020.5790.1270.1270.0000.0000.0000.000
103A112PHE00.0380.00622.625-0.586-0.5860.0000.0000.0000.000
104A113GLU-1-0.827-0.89125.02812.85812.8580.0000.0000.0000.000
105A114SER0-0.047-0.01027.545-0.256-0.2560.0000.0000.0000.000
106A115TRP0-0.040-0.03229.817-0.305-0.3050.0000.0000.0000.000
107A116ARG10.9070.97127.482-11.002-11.0020.0000.0000.0000.000
108A117PRO00.0700.02226.760-0.484-0.4840.0000.0000.0000.000
109A118ILE0-0.0230.01328.975-0.325-0.3250.0000.0000.0000.000
110A119PHE0-0.003-0.01631.637-0.046-0.0460.0000.0000.0000.000
111A120ARG10.7390.78131.821-9.767-9.7670.0000.0000.0000.000
112A121GLN00.0470.01127.9790.0620.0620.0000.0000.0000.000
113A122ASN0-0.0130.02432.5140.2640.2640.0000.0000.0000.000
114A123TRP00.033-0.00230.834-0.378-0.3780.0000.0000.0000.000
115A124ALA00.0400.02735.8190.1350.1350.0000.0000.0000.000
116A125SER00.0320.01234.916-0.152-0.1520.0000.0000.0000.000
117A126LEU0-0.0220.00531.417-0.134-0.1340.0000.0000.0000.000
118A127GLN00.0190.01236.1530.0410.0410.0000.0000.0000.000
119A128PRO00.003-0.01739.139-0.133-0.1330.0000.0000.0000.000
120A129TYR00.0540.03534.608-0.201-0.2010.0000.0000.0000.000
121A130LYS10.8390.94136.956-8.655-8.6550.0000.0000.0000.000
122A131LYS10.9330.96040.475-7.246-7.2460.0000.0000.0000.000
123A132LEU00.0710.04441.652-0.132-0.1320.0000.0000.0000.000
124A133SER0-0.017-0.02439.872-0.031-0.0310.0000.0000.0000.000
125A134VAL0-0.003-0.01042.497-0.118-0.1180.0000.0000.0000.000
126A135GLU-1-0.869-0.91745.4226.5756.5750.0000.0000.0000.000
127A136VAL00.0280.01144.662-0.154-0.1540.0000.0000.0000.000
128A137VAL0-0.0270.00145.377-0.116-0.1160.0000.0000.0000.000
129A138ARG10.8450.89648.163-6.550-6.5500.0000.0000.0000.000
130A139ARG10.8420.91148.169-6.687-6.6870.0000.0000.0000.000
131A140GLU-1-0.778-0.83247.8356.7076.7070.0000.0000.0000.000
132A141HIS10.7610.87249.715-6.443-6.4430.0000.0000.0000.000
133A142PRO00.0750.03353.7660.0400.0400.0000.0000.0000.000
134A143PHE00.0130.00756.330-0.019-0.0190.0000.0000.0000.000
135A144TRP0-0.079-0.03348.5050.0480.0480.0000.0000.0000.000
136A145ASP-1-0.783-0.88652.4046.1726.1720.0000.0000.0000.000
137A146ASP-1-0.781-0.89650.8856.3106.3100.0000.0000.0000.000
138A147GLN0-0.021-0.01447.9300.1960.1960.0000.0000.0000.000
139A148ARG10.9600.98647.547-5.999-5.9990.0000.0000.0000.000
140A149VAL0-0.003-0.01147.5770.1550.1550.0000.0000.0000.000
141A150GLU-1-0.912-0.96943.9287.4787.4780.0000.0000.0000.000
142A151GLN0-0.041-0.00743.2380.2180.2180.0000.0000.0000.000
143A152GLU-1-0.764-0.84242.4827.5277.5270.0000.0000.0000.000
144A153ALA0-0.016-0.01042.5010.1840.1840.0000.0000.0000.000
145A154LYS10.8850.94636.564-8.457-8.4570.0000.0000.0000.000
146A155ARG10.8680.90337.894-7.328-7.3280.0000.0000.0000.000
147A156ARG10.7230.81337.995-6.984-6.9840.0000.0000.0000.000
148A157PHE00.006-0.00233.4570.1610.1610.0000.0000.0000.000
149A158GLU-1-0.789-0.89133.6599.6239.6230.0000.0000.0000.000
150A159LYS10.9060.96932.911-8.168-8.1680.0000.0000.0000.000
151A160TYR00.0220.00333.4810.1430.1430.0000.0000.0000.000
152A161GLY00.0340.02132.1190.2070.2070.0000.0000.0000.000
153A162GLN0-0.012-0.00828.1830.0980.0980.0000.0000.0000.000
154A163LEU0-0.032-0.00528.6200.3290.3290.0000.0000.0000.000
155A164PHE00.008-0.01329.6440.2050.2050.0000.0000.0000.000
156A165MET0-0.0160.01924.0420.1300.1300.0000.0000.0000.000
157A166GLU-1-0.764-0.87424.71612.61512.6150.0000.0000.0000.000
158A167GLU-1-0.873-0.94225.06211.80411.8040.0000.0000.0000.000
159A168THR0-0.041-0.01324.436-0.051-0.0510.0000.0000.0000.000
160A169LEU00.0230.02518.2540.2380.2380.0000.0000.0000.000
161A170LYS10.8130.87721.233-11.617-11.6170.0000.0000.0000.000
162A171ALA0-0.036-0.01323.3460.0840.0840.0000.0000.0000.000
163A172ALA00.0140.00120.5240.0340.0340.0000.0000.0000.000
164A173LYS10.8030.88815.450-19.639-19.6390.0000.0000.0000.000
165A174ARG10.9150.96519.856-12.142-12.1420.0000.0000.0000.000
166A175MET0-0.041-0.02022.759-0.302-0.3020.0000.0000.0000.000
167A176ARG10.7990.90317.965-15.416-15.4160.0000.0000.0000.000
168A177PRO00.0330.01417.5020.9200.9200.0000.0000.0000.000
169A178ALA0-0.0110.00013.7860.4580.4580.0000.0000.0000.000
170A179ALA0-0.0040.02112.5782.0532.0530.0000.0000.0000.000
171A180ASN0-0.045-0.0188.9510.9270.9270.0000.0000.0000.000
172A181TRP0-0.005-0.01511.899-0.719-0.7190.0000.0000.0000.000
173A182GLY00.0570.02614.8340.5080.5080.0000.0000.0000.000
174A183TYR0-0.076-0.04816.100-0.901-0.9010.0000.0000.0000.000
175A184TYR0-0.007-0.01818.3250.3280.3280.0000.0000.0000.000
176A185ALA0-0.053-0.02718.783-0.945-0.9450.0000.0000.0000.000
177A186TYR0-0.0750.00619.613-1.011-1.0110.0000.0000.0000.000
178A187PRO00.0720.02617.6560.8620.8620.0000.0000.0000.000
179A188TYR00.039-0.00220.614-0.151-0.1510.0000.0000.0000.000
180A189CYS00.0000.00022.851-0.093-0.0930.0000.0000.0000.000
181A190TYR0-0.019-0.04324.952-0.421-0.4210.0000.0000.0000.000
182A191ASN00.0270.03923.570-0.325-0.3250.0000.0000.0000.000
183A192LEU0-0.0030.01326.9860.1750.1750.0000.0000.0000.000
184A193THR0-0.059-0.03029.2370.0510.0510.0000.0000.0000.000
185A194PRO00.003-0.01231.741-0.091-0.0910.0000.0000.0000.000
186A195ASN0-0.024-0.01533.037-0.371-0.3710.0000.0000.0000.000
187A196GLN0-0.042-0.01129.549-0.430-0.4300.0000.0000.0000.000
188A197PRO00.0360.02331.2370.3080.3080.0000.0000.0000.000
189A198SER00.0260.00830.2150.1120.1120.0000.0000.0000.000
190A199ALA00.0690.02325.6120.1800.1800.0000.0000.0000.000
191A200GLN00.0130.01725.1280.5170.5170.0000.0000.0000.000
192A202GLU-1-0.709-0.80026.2729.6029.6020.0000.0000.0000.000
193A203ALA00.0550.01128.6350.2720.2720.0000.0000.0000.000
194A204THR0-0.012-0.00929.8420.1120.1120.0000.0000.0000.000
195A205THR0-0.018-0.03026.2250.0880.0880.0000.0000.0000.000
196A206MET0-0.0220.01323.5880.1580.1580.0000.0000.0000.000
197A207GLN00.0230.01526.2090.1220.1220.0000.0000.0000.000
198A208GLU-1-0.842-0.89828.79710.03010.0300.0000.0000.0000.000
199A209ASN0-0.070-0.05623.1510.0280.0280.0000.0000.0000.000
200A210ASP-1-0.781-0.86924.10812.94712.9470.0000.0000.0000.000
201A211LYS10.8640.95425.721-10.085-10.0850.0000.0000.0000.000
202A212MET0-0.076-0.04024.028-0.365-0.3650.0000.0000.0000.000
203A213SER00.0660.02722.5780.7080.7080.0000.0000.0000.000
204A214TRP00.0240.01722.3920.5930.5930.0000.0000.0000.000
205A215LEU0-0.045-0.01320.6740.2140.2140.0000.0000.0000.000
206A216PHE00.033-0.00118.3420.5500.5500.0000.0000.0000.000
207A217GLU-1-0.694-0.82117.37217.55717.5570.0000.0000.0000.000
208A218SER0-0.083-0.03218.1770.6370.6370.0000.0000.0000.000
209A219GLU-1-0.838-0.93015.63018.19518.1950.0000.0000.0000.000
210A220ASP-1-0.773-0.84611.37522.78722.7870.0000.0000.0000.000
211A221VAL0-0.036-0.0229.7442.4132.4130.0000.0000.0000.000
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