![FMODB](./images/FMODB-Logo_20190201-0_300ppi.png)
FMODB ID: 49YQN
Calculation Name: 4UZ2-A-Xray372
Preferred Name:
Target Type:
Ligand Name:
ligand 3-letter code:
PDB ID: 4UZ2
Chain ID: A
UniProt ID: Q5SLM7
Base Structure: X-ray
Registration Date: 2023-06-22
Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.
Modeling method
Optimization | MOE:Amber10:EHT |
---|---|
Restraint | OptAll |
Protonation | MOE:Protonate 3D |
Complement | MOE:Structure Preparation |
Water | No |
Procedure | Auto-FMO protocol ver. 2.20220422 |
FMO calculation
FMO method | FMO2-MP2/6-31G(d) |
---|---|
Fragmentation | Auto |
Number of fragment | 99 |
LigandCharge | |
Software | ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP) |
Total energy (hartree)
FMO2-HF: Electronic energy | -632286.47259 |
---|---|
FMO2-HF: Nuclear repulsion | 594369.422508 |
FMO2-HF: Total energy | -37917.050082 |
FMO2-MP2: Total energy | -38028.626229 |
3D Structure
Ligand structure
![ligand structure](./Kdata/F027312/ligand_interaction/ligand_F027312.png)
Ligand Interaction
![ligand interaction](./Kdata/F027312/ligand_interaction/ligand_interaction_F027312.png)
Ligand binding energy
"IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(A:16:GLN)
Summations of interaction energy for
fragment #1(A:16:GLN)
IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
-9.505 | -1.822 | 2.198 | -3.694 | -6.188 | 0.024 |
Interaction energy analysis for fragmet #1(A:16:GLN)
frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | A | 18 | THR | 0 | -0.011 | -0.016 | 2.745 | 3.328 | 7.115 | 0.375 | -1.766 | -2.395 | 0.002 |
4 | A | 19 | TYR | 0 | -0.013 | -0.017 | 4.965 | -0.956 | -0.921 | -0.001 | -0.005 | -0.029 | 0.000 |
5 | A | 20 | THR | 0 | 0.009 | 0.005 | 8.721 | 0.267 | 0.267 | 0.000 | 0.000 | 0.000 | 0.000 |
6 | A | 21 | VAL | 0 | -0.022 | -0.001 | 11.574 | -0.091 | -0.091 | 0.000 | 0.000 | 0.000 | 0.000 |
7 | A | 22 | ALA | 0 | 0.051 | 0.034 | 14.403 | -0.111 | -0.111 | 0.000 | 0.000 | 0.000 | 0.000 |
8 | A | 23 | PRO | 0 | 0.005 | -0.028 | 17.598 | 0.049 | 0.049 | 0.000 | 0.000 | 0.000 | 0.000 |
9 | A | 24 | GLY | 0 | 0.033 | 0.029 | 20.762 | -0.040 | -0.040 | 0.000 | 0.000 | 0.000 | 0.000 |
10 | A | 25 | ASP | -1 | -0.774 | -0.861 | 16.042 | 0.629 | 0.629 | 0.000 | 0.000 | 0.000 | 0.000 |
11 | A | 26 | THR | 0 | 0.005 | -0.001 | 17.322 | 0.008 | 0.008 | 0.000 | 0.000 | 0.000 | 0.000 |
12 | A | 27 | LEU | 0 | 0.058 | 0.022 | 12.290 | 0.040 | 0.040 | 0.000 | 0.000 | 0.000 | 0.000 |
13 | A | 28 | TYR | 0 | 0.051 | 0.034 | 14.630 | 0.049 | 0.049 | 0.000 | 0.000 | 0.000 | 0.000 |
14 | A | 29 | SER | 0 | -0.013 | -0.018 | 17.179 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
15 | A | 30 | ILE | 0 | 0.013 | 0.004 | 10.901 | -0.046 | -0.046 | 0.000 | 0.000 | 0.000 | 0.000 |
16 | A | 31 | ALA | 0 | -0.010 | -0.001 | 12.843 | 0.034 | 0.034 | 0.000 | 0.000 | 0.000 | 0.000 |
17 | A | 32 | ARG | 1 | 0.895 | 0.936 | 13.841 | -0.529 | -0.529 | 0.000 | 0.000 | 0.000 | 0.000 |
18 | A | 33 | ARG | 1 | 0.802 | 0.906 | 14.828 | -0.583 | -0.583 | 0.000 | 0.000 | 0.000 | 0.000 |
19 | A | 34 | TYR | 0 | -0.056 | -0.028 | 10.745 | -0.188 | -0.188 | 0.000 | 0.000 | 0.000 | 0.000 |
20 | A | 35 | GLY | 0 | -0.006 | 0.017 | 12.083 | 0.053 | 0.053 | 0.000 | 0.000 | 0.000 | 0.000 |
21 | A | 36 | THR | 0 | 0.006 | -0.001 | 10.109 | -0.043 | -0.043 | 0.000 | 0.000 | 0.000 | 0.000 |
22 | A | 37 | THR | 0 | -0.025 | -0.037 | 12.919 | -0.091 | -0.091 | 0.000 | 0.000 | 0.000 | 0.000 |
23 | A | 38 | VAL | 0 | 0.033 | 0.004 | 12.890 | 0.215 | 0.215 | 0.000 | 0.000 | 0.000 | 0.000 |
24 | A | 39 | GLU | -1 | -0.807 | -0.894 | 13.384 | 1.010 | 1.010 | 0.000 | 0.000 | 0.000 | 0.000 |
25 | A | 40 | GLU | -1 | -0.796 | -0.857 | 8.145 | 2.063 | 2.063 | 0.000 | 0.000 | 0.000 | 0.000 |
26 | A | 41 | LEU | 0 | -0.001 | 0.004 | 8.157 | 0.540 | 0.540 | 0.000 | 0.000 | 0.000 | 0.000 |
27 | A | 42 | MET | 0 | -0.027 | -0.005 | 9.044 | 0.464 | 0.464 | 0.000 | 0.000 | 0.000 | 0.000 |
28 | A | 43 | ARG | 1 | 0.860 | 0.902 | 7.088 | -1.413 | -1.413 | 0.000 | 0.000 | 0.000 | 0.000 |
29 | A | 44 | LEU | 0 | -0.027 | 0.007 | 3.199 | -1.222 | -0.368 | 0.036 | -0.331 | -0.558 | 0.002 |
30 | A | 45 | ASN | 0 | -0.073 | -0.057 | 6.217 | 1.349 | 1.349 | 0.000 | 0.000 | 0.000 | 0.000 |
31 | A | 46 | GLY | 0 | 0.025 | 0.026 | 7.729 | -0.240 | -0.240 | 0.000 | 0.000 | 0.000 | 0.000 |
32 | A | 47 | LEU | 0 | -0.056 | -0.028 | 11.083 | -0.192 | -0.192 | 0.000 | 0.000 | 0.000 | 0.000 |
33 | A | 48 | GLU | -1 | -0.881 | -0.944 | 13.452 | 0.615 | 0.615 | 0.000 | 0.000 | 0.000 | 0.000 |
34 | A | 49 | SER | 0 | -0.029 | -0.024 | 16.552 | -0.103 | -0.103 | 0.000 | 0.000 | 0.000 | 0.000 |
35 | A | 50 | PHE | 0 | 0.024 | -0.007 | 16.446 | 0.113 | 0.113 | 0.000 | 0.000 | 0.000 | 0.000 |
36 | A | 51 | LEU | 0 | -0.048 | -0.013 | 17.972 | 0.005 | 0.005 | 0.000 | 0.000 | 0.000 | 0.000 |
37 | A | 52 | LEU | 0 | -0.015 | -0.005 | 13.273 | 0.121 | 0.121 | 0.000 | 0.000 | 0.000 | 0.000 |
38 | A | 53 | GLN | 0 | 0.019 | 0.011 | 16.383 | -0.139 | -0.139 | 0.000 | 0.000 | 0.000 | 0.000 |
39 | A | 54 | PRO | 0 | -0.007 | -0.020 | 16.477 | 0.065 | 0.065 | 0.000 | 0.000 | 0.000 | 0.000 |
40 | A | 55 | GLY | 0 | 0.018 | 0.013 | 15.604 | -0.056 | -0.056 | 0.000 | 0.000 | 0.000 | 0.000 |
41 | A | 56 | GLN | 0 | 0.002 | 0.009 | 12.031 | -0.182 | -0.182 | 0.000 | 0.000 | 0.000 | 0.000 |
42 | A | 57 | VAL | 0 | -0.010 | -0.004 | 6.970 | 0.060 | 0.060 | 0.000 | 0.000 | 0.000 | 0.000 |
43 | A | 58 | LEU | 0 | -0.043 | -0.017 | 7.662 | 0.112 | 0.112 | 0.000 | 0.000 | 0.000 | 0.000 |
44 | A | 59 | LYS | 1 | 0.865 | 0.920 | 2.588 | -9.406 | -7.274 | 1.772 | -1.357 | -2.549 | 0.018 |
45 | A | 60 | LEU | 0 | -0.020 | -0.013 | 3.409 | -4.309 | -3.810 | 0.011 | -0.164 | -0.346 | 0.002 |
46 | A | 61 | PRO | 0 | -0.007 | 0.005 | 3.937 | 1.676 | 1.969 | 0.006 | -0.057 | -0.242 | 0.000 |
47 | A | 62 | SER | 0 | -0.015 | -0.009 | 4.599 | -0.644 | -0.561 | -0.001 | -0.014 | -0.069 | 0.000 |
48 | A | 63 | ARG | 1 | 0.907 | 0.951 | 5.740 | -0.408 | -0.408 | 0.000 | 0.000 | 0.000 | 0.000 |
49 | A | 64 | GLU | -1 | -0.791 | -0.878 | 7.794 | -0.548 | -0.548 | 0.000 | 0.000 | 0.000 | 0.000 |
50 | A | 65 | ARG | 1 | 0.769 | 0.869 | 5.042 | 1.600 | 1.600 | 0.000 | 0.000 | 0.000 | 0.000 |
51 | A | 66 | THR | 0 | -0.018 | -0.020 | 9.297 | 0.161 | 0.161 | 0.000 | 0.000 | 0.000 | 0.000 |
52 | A | 67 | HIS | 0 | -0.006 | 0.005 | 12.748 | -0.154 | -0.154 | 0.000 | 0.000 | 0.000 | 0.000 |
53 | A | 68 | VAL | 0 | -0.003 | -0.009 | 15.288 | 0.063 | 0.063 | 0.000 | 0.000 | 0.000 | 0.000 |
54 | A | 69 | VAL | 0 | -0.034 | 0.000 | 19.097 | -0.018 | -0.018 | 0.000 | 0.000 | 0.000 | 0.000 |
55 | A | 70 | ALA | 0 | 0.065 | 0.029 | 21.192 | 0.032 | 0.032 | 0.000 | 0.000 | 0.000 | 0.000 |
56 | A | 71 | PRO | 0 | -0.026 | -0.043 | 22.827 | 0.012 | 0.012 | 0.000 | 0.000 | 0.000 | 0.000 |
57 | A | 72 | GLY | 0 | 0.016 | 0.018 | 25.534 | -0.009 | -0.009 | 0.000 | 0.000 | 0.000 | 0.000 |
58 | A | 73 | ASP | -1 | -0.786 | -0.881 | 19.954 | -0.423 | -0.423 | 0.000 | 0.000 | 0.000 | 0.000 |
59 | A | 74 | THR | 0 | -0.015 | -0.013 | 21.539 | 0.028 | 0.028 | 0.000 | 0.000 | 0.000 | 0.000 |
60 | A | 75 | LEU | 0 | 0.074 | 0.031 | 19.441 | -0.032 | -0.032 | 0.000 | 0.000 | 0.000 | 0.000 |
61 | A | 76 | PHE | 0 | 0.010 | 0.006 | 18.797 | -0.030 | -0.030 | 0.000 | 0.000 | 0.000 | 0.000 |
62 | A | 77 | SER | 0 | -0.039 | -0.019 | 18.761 | -0.018 | -0.018 | 0.000 | 0.000 | 0.000 | 0.000 |
63 | A | 78 | LEU | 0 | 0.013 | 0.004 | 15.971 | -0.060 | -0.060 | 0.000 | 0.000 | 0.000 | 0.000 |
64 | A | 79 | ALA | 0 | 0.002 | 0.006 | 14.352 | -0.069 | -0.069 | 0.000 | 0.000 | 0.000 | 0.000 |
65 | A | 80 | ARG | 1 | 0.948 | 0.971 | 13.915 | 0.385 | 0.385 | 0.000 | 0.000 | 0.000 | 0.000 |
66 | A | 81 | ARG | 1 | 0.848 | 0.937 | 10.772 | 1.007 | 1.007 | 0.000 | 0.000 | 0.000 | 0.000 |
67 | A | 82 | TYR | 0 | -0.020 | -0.020 | 9.639 | -0.172 | -0.172 | 0.000 | 0.000 | 0.000 | 0.000 |
68 | A | 83 | GLY | 0 | 0.062 | 0.049 | 9.498 | -0.032 | -0.032 | 0.000 | 0.000 | 0.000 | 0.000 |
69 | A | 84 | THR | 0 | 0.025 | 0.005 | 10.804 | 0.092 | 0.092 | 0.000 | 0.000 | 0.000 | 0.000 |
70 | A | 85 | THR | 0 | 0.004 | -0.028 | 12.988 | 0.008 | 0.008 | 0.000 | 0.000 | 0.000 | 0.000 |
71 | A | 86 | VAL | 0 | 0.006 | -0.015 | 16.774 | -0.006 | -0.006 | 0.000 | 0.000 | 0.000 | 0.000 |
72 | A | 87 | GLU | -1 | -0.811 | -0.884 | 19.458 | -0.168 | -0.168 | 0.000 | 0.000 | 0.000 | 0.000 |
73 | A | 88 | ALA | 0 | 0.029 | 0.029 | 15.143 | 0.015 | 0.015 | 0.000 | 0.000 | 0.000 | 0.000 |
74 | A | 89 | LEU | 0 | -0.012 | -0.013 | 15.057 | 0.003 | 0.003 | 0.000 | 0.000 | 0.000 | 0.000 |
75 | A | 90 | MET | 0 | -0.047 | -0.011 | 17.008 | 0.009 | 0.009 | 0.000 | 0.000 | 0.000 | 0.000 |
76 | A | 91 | ARG | 1 | 0.780 | 0.859 | 16.378 | 0.213 | 0.213 | 0.000 | 0.000 | 0.000 | 0.000 |
77 | A | 92 | LEU | 0 | -0.036 | -0.015 | 13.191 | 0.024 | 0.024 | 0.000 | 0.000 | 0.000 | 0.000 |
78 | A | 93 | ASN | 0 | -0.090 | -0.063 | 16.495 | 0.017 | 0.017 | 0.000 | 0.000 | 0.000 | 0.000 |
79 | A | 94 | GLY | 0 | 0.019 | 0.023 | 19.929 | 0.012 | 0.012 | 0.000 | 0.000 | 0.000 | 0.000 |
80 | A | 95 | LEU | 0 | -0.051 | -0.019 | 21.455 | 0.009 | 0.009 | 0.000 | 0.000 | 0.000 | 0.000 |
81 | A | 96 | SER | 0 | 0.013 | -0.004 | 24.393 | 0.004 | 0.004 | 0.000 | 0.000 | 0.000 | 0.000 |
82 | A | 97 | SER | 0 | -0.043 | -0.048 | 26.906 | 0.004 | 0.004 | 0.000 | 0.000 | 0.000 | 0.000 |
83 | A | 98 | PRO | 0 | 0.003 | -0.015 | 24.687 | -0.008 | -0.008 | 0.000 | 0.000 | 0.000 | 0.000 |
84 | A | 99 | GLU | -1 | -0.920 | -0.919 | 25.212 | -0.152 | -0.152 | 0.000 | 0.000 | 0.000 | 0.000 |
85 | A | 100 | ILE | 0 | -0.010 | -0.008 | 21.894 | -0.006 | -0.006 | 0.000 | 0.000 | 0.000 | 0.000 |
86 | A | 101 | LYS | 1 | 0.936 | 0.971 | 25.349 | 0.148 | 0.148 | 0.000 | 0.000 | 0.000 | 0.000 |
87 | A | 102 | VAL | 0 | 0.003 | -0.010 | 25.066 | -0.010 | -0.010 | 0.000 | 0.000 | 0.000 | 0.000 |
88 | A | 103 | GLY | 0 | -0.012 | -0.007 | 24.155 | 0.020 | 0.020 | 0.000 | 0.000 | 0.000 | 0.000 |
89 | A | 104 | GLN | 0 | 0.011 | 0.014 | 22.089 | 0.007 | 0.007 | 0.000 | 0.000 | 0.000 | 0.000 |
90 | A | 105 | VAL | 0 | -0.007 | -0.005 | 18.108 | -0.030 | -0.030 | 0.000 | 0.000 | 0.000 | 0.000 |
91 | A | 106 | LEU | 0 | -0.036 | -0.014 | 17.183 | 0.030 | 0.030 | 0.000 | 0.000 | 0.000 | 0.000 |
92 | A | 107 | ARG | 1 | 0.882 | 0.927 | 14.195 | 0.099 | 0.099 | 0.000 | 0.000 | 0.000 | 0.000 |
93 | A | 108 | LEU | 0 | -0.016 | -0.009 | 10.506 | 0.014 | 0.014 | 0.000 | 0.000 | 0.000 | 0.000 |
94 | A | 109 | PRO | 0 | -0.010 | 0.009 | 10.315 | -0.033 | -0.033 | 0.000 | 0.000 | 0.000 | 0.000 |
95 | A | 110 | GLU | -1 | -0.819 | -0.912 | 5.510 | -1.310 | -1.310 | 0.000 | 0.000 | 0.000 | 0.000 |
96 | A | 111 | GLU | -1 | -0.932 | -0.953 | 5.421 | -1.906 | -1.906 | 0.000 | 0.000 | 0.000 | 0.000 |
97 | A | 112 | GLY | 0 | -0.016 | -0.016 | 7.546 | -0.012 | -0.012 | 0.000 | 0.000 | 0.000 | 0.000 |
98 | A | 113 | GLU | -1 | -0.830 | -0.874 | 9.979 | -0.213 | -0.213 | 0.000 | 0.000 | 0.000 | 0.000 |
99 | A | 114 | ALA | 0 | -0.006 | 0.016 | 9.653 | 0.025 | 0.025 | 0.000 | 0.000 | 0.000 | 0.000 |