FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 4G1KN

Calculation Name: 1OFC-X-Xray549

Preferred Name:

Target Type:

Ligand Name: alpha-d-glucopyranose | 4-deoxy-alpha-d-glucopyranose

Ligand 3-letter code: GLC | G4D

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 1OFC

Chain ID: X

ChEMBL ID:

UniProt ID: Q24368

Base Structure: X-ray

Registration Date: 2025-10-11

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement ac.sh, 23 2024 Oct
Water No
Procedure Manual calculation
Remarks
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 281
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -3605791.535416
FMO2-HF: Nuclear repulsion 3489484.901493
FMO2-HF: Total energy -116306.633923
FMO2-MP2: Total energy -116649.780749


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(X:697:ALA)


Summations of interaction energy for fragment #1(X:697:ALA)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-114.198-109.6160.492-2.05-3.023-0.016
Interaction energy analysis for fragmet #1(X:697:ALA)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.847 / q_NPA : 0.916
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3X699ASP-1-0.827-0.8952.478-62.538-59.2650.272-1.562-1.982-0.012
4X700ALA0-0.057-0.0322.83610.58411.6590.221-0.418-0.879-0.004
5X701TYR00.0560.0314.3379.96910.203-0.001-0.070-0.1620.000
6X702PHE00.022-0.0036.3596.1996.1990.0000.0000.0000.000
7X703ARG10.9050.9507.11737.91537.9150.0000.0000.0000.000
8X704GLU-1-0.812-0.8688.073-21.856-21.8560.0000.0000.0000.000
9X705ALA00.0520.0169.8183.3253.3250.0000.0000.0000.000
10X706LEU0-0.0070.00511.9120.7250.7250.0000.0000.0000.000
11X707ARG10.8840.91514.93716.98916.9890.0000.0000.0000.000
12X708VAL00.0080.01810.9421.0961.0960.0000.0000.0000.000
13X709SER0-0.017-0.01214.3620.0780.0780.0000.0000.0000.000
14X710GLU0-0.015-0.01911.5680.1750.1750.0000.0000.0000.000
15X711PRO0-0.0170.00511.535-1.812-1.8120.0000.0000.0000.000
16X712LYS0-0.063-0.05010.9621.2881.2880.0000.0000.0000.000
17X713ALA0-0.0220.00113.1930.3160.3160.0000.0000.0000.000
18X714PRO00.0530.04911.9811.1211.1210.0000.0000.0000.000
19X715LYS10.9140.94915.04014.66614.6660.0000.0000.0000.000
20X716ALA00.0340.02114.1450.9260.9260.0000.0000.0000.000
21X717PRO0-0.029-0.01615.958-0.412-0.4120.0000.0000.0000.000
22X718ARG10.8700.92410.53423.45623.4560.0000.0000.0000.000
23X719PRO00.0520.03616.0151.0081.0080.0000.0000.0000.000
24X720PRO0-0.031-0.01518.903-0.305-0.3050.0000.0000.0000.000
25X721LYS10.8670.92018.86615.61715.6170.0000.0000.0000.000
26X722GLN00.0070.00913.180-1.574-1.5740.0000.0000.0000.000
27X723PRO00.0400.02115.6340.2500.2500.0000.0000.0000.000
28X724ILE0-0.057-0.02615.369-1.173-1.1730.0000.0000.0000.000
29X725VAL00.0360.04111.8420.8080.8080.0000.0000.0000.000
30X726GLN0-0.031-0.03813.171-0.727-0.7270.0000.0000.0000.000
31X727ASP-1-0.794-0.90110.478-23.945-23.9450.0000.0000.0000.000
32X728PHE0-0.040-0.02611.685-0.120-0.1200.0000.0000.0000.000
33X729GLN00.0170.00614.3450.3950.3950.0000.0000.0000.000
34X730PHE00.0340.02711.9761.1031.1030.0000.0000.0000.000
35X731PHE00.0280.03511.4480.4710.4710.0000.0000.0000.000
36X732PRO00.0430.02810.280-2.595-2.5950.0000.0000.0000.000
37X733PRO0-0.004-0.0265.278-0.831-0.8310.0000.0000.0000.000
38X734ARG10.8460.9106.90021.65421.6540.0000.0000.0000.000
39X735LEU00.0220.0239.4820.9150.9150.0000.0000.0000.000
40X736PHE0-0.025-0.0205.916-0.270-0.2700.0000.0000.0000.000
41X737GLU-1-0.873-0.9176.056-30.580-30.5800.0000.0000.0000.000
42X738LEU00.0330.0207.3601.6181.6180.0000.0000.0000.000
43X739LEU0-0.033-0.0119.8131.7691.7690.0000.0000.0000.000
44X740ASP-1-0.874-0.9585.850-37.732-37.7320.0000.0000.0000.000
45X741GLN0-0.074-0.0389.2110.5930.5930.0000.0000.0000.000
46X742GLU-1-0.807-0.89611.748-15.837-15.8370.0000.0000.0000.000
47X743ILE0-0.073-0.03410.7171.7261.7260.0000.0000.0000.000
48X744TYR0-0.051-0.0417.9800.2990.2990.0000.0000.0000.000
49X745TYR00.0590.03013.5501.3551.3550.0000.0000.0000.000
50X746PHE0-0.010-0.00816.4981.1361.1360.0000.0000.0000.000
51X747ARG10.7820.86411.45123.37823.3780.0000.0000.0000.000
52X748LYS10.8750.94117.91514.94614.9460.0000.0000.0000.000
53X749THR0-0.081-0.02919.6230.8010.8010.0000.0000.0000.000
54X750VAL0-0.042-0.00720.8740.7200.7200.0000.0000.0000.000
55X751GLY00.006-0.00922.662-0.150-0.1500.0000.0000.0000.000
56X752TYR-1-0.941-0.97916.253-16.567-16.5670.0000.0000.0000.000
57X753LYS10.9080.94820.17413.07513.0750.0000.0000.0000.000
58X754VAL00.0540.03715.033-0.013-0.0130.0000.0000.0000.000
59X755PRO0-0.002-0.00217.4320.7430.7430.0000.0000.0000.000
60X756LYS10.8360.90218.97213.58413.5840.0000.0000.0000.000
61X757ASN0-0.057-0.02618.574-1.145-1.1450.0000.0000.0000.000
62X758THR00.018-0.02717.8580.6900.6900.0000.0000.0000.000
63X759GLU0-0.027-0.00314.896-0.075-0.0750.0000.0000.0000.000
64X760LEU00.0370.02010.676-1.066-1.0660.0000.0000.0000.000
65X761GLY0-0.0020.01111.363-1.838-1.8380.0000.0000.0000.000
66X762SER00.0070.01313.7470.9550.9550.0000.0000.0000.000
67X763ASP-1-0.805-0.88516.727-14.679-14.6790.0000.0000.0000.000
68X764ALA00.0200.01618.6050.9220.9220.0000.0000.0000.000
69X765THR00.020-0.01518.564-0.742-0.7420.0000.0000.0000.000
70X766LYS10.8270.91214.34320.18820.1880.0000.0000.0000.000
71X767VAL00.0870.04613.037-0.441-0.4410.0000.0000.0000.000
72X768GLN0-0.016-0.01414.413-0.451-0.4510.0000.0000.0000.000
73X769ARG10.8120.89716.48114.90214.9020.0000.0000.0000.000
74X770GLU-1-0.832-0.90612.393-21.987-21.9870.0000.0000.0000.000
75X771GLU-1-0.749-0.8639.074-30.899-30.8990.0000.0000.0000.000
76X772GLN0-0.027-0.02112.890-0.036-0.0360.0000.0000.0000.000
77X773ARG10.8540.93311.71022.22922.2290.0000.0000.0000.000
78X774LYS10.8420.9247.41633.18533.1850.0000.0000.0000.000
79X775ILE00.0080.01913.0700.0370.0370.0000.0000.0000.000
80X776ASP-1-0.800-0.90615.871-14.212-14.2120.0000.0000.0000.000
81X777GLU-1-0.934-0.97715.478-16.626-16.6260.0000.0000.0000.000
82X778ALA0-0.0310.01115.085-0.309-0.3090.0000.0000.0000.000
83X779GLU-1-0.897-0.96115.866-13.115-13.1150.0000.0000.0000.000
84X780PRO0-0.093-0.04116.619-0.826-0.8260.0000.0000.0000.000
85X781LEU0-0.044-0.01814.097-0.114-0.1140.0000.0000.0000.000
86X782THR00.003-0.02117.8840.8820.8820.0000.0000.0000.000
87X783GLU-1-0.905-0.96020.002-12.406-12.4060.0000.0000.0000.000
88X784GLU-1-0.922-0.96820.490-12.700-12.7000.0000.0000.0000.000
89X785GLU-1-0.780-0.86814.965-18.089-18.0890.0000.0000.0000.000
90X786ILE0-0.035-0.00816.868-0.859-0.8590.0000.0000.0000.000
91X787GLN00.0100.00419.234-0.256-0.2560.0000.0000.0000.000
92X788GLU-1-0.833-0.90615.025-19.122-19.1220.0000.0000.0000.000
93X789LYS10.7770.88014.39616.35616.3560.0000.0000.0000.000
94X790GLU-1-0.805-0.91016.081-16.025-16.0250.0000.0000.0000.000
95X791ASN0-0.064-0.02319.3610.5740.5740.0000.0000.0000.000
96X792LEU0-0.002-0.00613.066-0.117-0.1170.0000.0000.0000.000
97X793LEU0-0.031-0.01715.361-0.854-0.8540.0000.0000.0000.000
98X794SER0-0.079-0.03817.1690.5260.5260.0000.0000.0000.000
99X795GLN0-0.015-0.00715.030-0.489-0.4890.0000.0000.0000.000
100X796GLY00.0750.01715.350-1.619-1.6190.0000.0000.0000.000
101X797PHE0-0.0070.00916.8921.0441.0440.0000.0000.0000.000
102X798THR0-0.010-0.01919.4340.2150.2150.0000.0000.0000.000
103X799ALA0-0.0160.00220.8180.2570.2570.0000.0000.0000.000
104X800TRP00.0310.00920.5730.4320.4320.0000.0000.0000.000
105X801THR0-0.037-0.04520.781-0.734-0.7340.0000.0000.0000.000
106X802LYS10.9220.95114.96220.40520.4050.0000.0000.0000.000
107X803ARG10.9320.97220.72011.00911.0090.0000.0000.0000.000
108X804ASP-1-0.753-0.84023.389-12.452-12.4520.0000.0000.0000.000
109X805PHE00.0320.02017.2600.0870.0870.0000.0000.0000.000
110X806ASN0-0.014-0.02321.046-0.372-0.3720.0000.0000.0000.000
111X807GLN0-0.040-0.00623.1030.1730.1730.0000.0000.0000.000
112X808PHE00.0670.03620.5880.3510.3510.0000.0000.0000.000
113X809ILE0-0.033-0.00219.4400.1610.1610.0000.0000.0000.000
114X810LYS10.8140.90223.41911.31311.3130.0000.0000.0000.000
115X811ALA00.0700.03627.0370.3680.3680.0000.0000.0000.000
116X812ASN00.007-0.02123.9140.2800.2800.0000.0000.0000.000
117X813GLU-1-0.926-0.94526.479-11.157-11.1570.0000.0000.0000.000
118X814LYS0-0.137-0.05427.9900.4620.4620.0000.0000.0000.000
119X815TYR0-0.043-0.02630.3750.4870.4870.0000.0000.0000.000
120X816GLY0-0.020-0.01328.5270.2310.2310.0000.0000.0000.000
121X817ARG10.8470.87722.44013.35413.3540.0000.0000.0000.000
122X818ASP-1-0.939-0.95926.822-11.113-11.1130.0000.0000.0000.000
123X819ASP-1-0.874-0.90729.584-9.147-9.1470.0000.0000.0000.000
124X820ILE00.020-0.01026.896-0.114-0.1140.0000.0000.0000.000
125X821ASP-1-0.908-0.94730.014-9.268-9.2680.0000.0000.0000.000
126X822ASN0-0.114-0.07933.3890.2930.2930.0000.0000.0000.000
127X823ILE00.0040.00726.534-0.063-0.0630.0000.0000.0000.000
128X824ALA0-0.046-0.02529.400-0.181-0.1810.0000.0000.0000.000
129X825LYS10.8960.93430.3219.0399.0390.0000.0000.0000.000
130X826ASP-1-0.854-0.91930.773-9.846-9.8460.0000.0000.0000.000
131X827VAL0-0.019-0.01226.320-0.315-0.3150.0000.0000.0000.000
132X828GLU-1-0.943-0.97829.469-9.476-9.4760.0000.0000.0000.000
133X829GLY0-0.038-0.02429.811-0.314-0.3140.0000.0000.0000.000
134X830LYS10.8260.93125.03911.96711.9670.0000.0000.0000.000
135X831THR0-0.041-0.00929.6990.4970.4970.0000.0000.0000.000
136X832PRO0-0.008-0.02529.565-0.314-0.3140.0000.0000.0000.000
137X833GLU-1-0.925-0.96529.142-10.478-10.4780.0000.0000.0000.000
138X834GLU-1-0.762-0.87826.235-11.450-11.4500.0000.0000.0000.000
139X835VAL0-0.042-0.02324.806-0.713-0.7130.0000.0000.0000.000
140X836ILE0-0.017-0.00224.965-0.434-0.4340.0000.0000.0000.000
141X837GLU-1-0.938-0.97123.087-13.232-13.2320.0000.0000.0000.000
142X838TYR0-0.081-0.05217.157-0.757-0.7570.0000.0000.0000.000
143X839ASN0-0.006-0.01820.148-0.978-0.9780.0000.0000.0000.000
144X840ALA0-0.0140.00121.079-0.373-0.3730.0000.0000.0000.000
145X841VAL00.0390.01315.646-0.579-0.5790.0000.0000.0000.000
146X842PHE0-0.011-0.01016.019-1.466-1.4660.0000.0000.0000.000
147X843TRP0-0.042-0.04516.347-1.174-1.1740.0000.0000.0000.000
148X844GLU-1-0.986-0.96515.178-19.346-19.3460.0000.0000.0000.000
149X845ARG10.8320.89310.39924.35224.3520.0000.0000.0000.000
150X846CYS0-0.0060.00811.663-2.287-2.2870.0000.0000.0000.000
151X847THR00.010-0.0139.570-0.035-0.0350.0000.0000.0000.000
152X848GLU-1-0.875-0.9207.337-34.736-34.7360.0000.0000.0000.000
153X849LEU0-0.068-0.0138.369-2.105-2.1050.0000.0000.0000.000
154X850GLN0-0.017-0.0256.2330.6480.6480.0000.0000.0000.000
155X851ASP-1-0.858-0.91110.291-17.467-17.4670.0000.0000.0000.000
156X852ILE00.0000.00912.3261.9301.9300.0000.0000.0000.000
157X853GLU-1-0.883-0.94414.564-18.556-18.5560.0000.0000.0000.000
158X854ARG10.7700.87316.88617.32417.3240.0000.0000.0000.000
159X855ILE0-0.022-0.00915.7111.0421.0420.0000.0000.0000.000
160X856MET00.0280.02217.5990.8180.8180.0000.0000.0000.000
161X857GLY00.0880.04720.3160.8450.8450.0000.0000.0000.000
162X858GLN0-0.124-0.07322.2750.2540.2540.0000.0000.0000.000
163X859ILE00.0410.01921.3030.6510.6510.0000.0000.0000.000
164X860GLU-1-0.847-0.92222.509-13.377-13.3770.0000.0000.0000.000
165X861ARG10.8290.91124.64812.75412.7540.0000.0000.0000.000
166X862GLY0-0.0030.01028.0910.4880.4880.0000.0000.0000.000
167X863GLU-1-0.716-0.83426.452-11.716-11.7160.0000.0000.0000.000
168X864GLY00.0130.00730.2020.3870.3870.0000.0000.0000.000
169X865LYS10.8750.93632.06510.24810.2480.0000.0000.0000.000
170X866ILE00.0190.03031.8930.4520.4520.0000.0000.0000.000
171X867GLN00.0810.03533.8750.2450.2450.0000.0000.0000.000
172X868ARG10.7930.86535.8988.1478.1470.0000.0000.0000.000
173X869ARG10.9100.93936.3618.8168.8160.0000.0000.0000.000
174X870LEU00.0110.00136.9510.3100.3100.0000.0000.0000.000
175X871SER0-0.043-0.02239.1840.2120.2120.0000.0000.0000.000
176X872ILE00.010-0.00141.7750.2370.2370.0000.0000.0000.000
177X873LYS10.8600.91643.6937.0737.0730.0000.0000.0000.000
178X874LYS10.9180.97244.0907.3077.3070.0000.0000.0000.000
179X875ALA00.001-0.00645.9520.1860.1860.0000.0000.0000.000
180X876LEU0-0.001-0.01047.7810.2060.2060.0000.0000.0000.000
181X877ASP-1-0.792-0.87448.928-6.414-6.4140.0000.0000.0000.000
182X878GLN0-0.021-0.00848.9340.2420.2420.0000.0000.0000.000
183X879LYS10.8170.90151.9435.9405.9400.0000.0000.0000.000
184X880MET0-0.057-0.04853.8900.2110.2110.0000.0000.0000.000
185X881SER0-0.071-0.04154.9830.1390.1390.0000.0000.0000.000
186X882ARG10.8800.94352.5146.1016.1010.0000.0000.0000.000
187X883TYR0-0.003-0.00657.7410.0870.0870.0000.0000.0000.000
188X884ARG10.9690.98961.3724.8674.8670.0000.0000.0000.000
189X885ALA00.011-0.00563.7020.0170.0170.0000.0000.0000.000
190X886PRO00.0640.04158.9600.0530.0530.0000.0000.0000.000
191X887PHE00.048-0.00158.3410.0100.0100.0000.0000.0000.000
192X888HIS0-0.063-0.03562.1650.0470.0470.0000.0000.0000.000
193X889GLN00.005-0.00463.596-0.036-0.0360.0000.0000.0000.000
194X890LEU0-0.0150.01756.0950.0110.0110.0000.0000.0000.000
195X891ARG10.8650.92160.0285.1585.1580.0000.0000.0000.000
196X892LEU00.0090.00254.662-0.091-0.0910.0000.0000.0000.000
197X893GLN00.0020.01654.5400.1570.1570.0000.0000.0000.000
198X894TYR0-0.023-0.07154.712-0.067-0.0670.0000.0000.0000.000
199X895GLY00.0860.06054.624-0.087-0.0870.0000.0000.0000.000
200X896ASN0-0.018-0.01453.8580.1950.1950.0000.0000.0000.000
201X897ASN0-0.025-0.01250.184-0.077-0.0770.0000.0000.0000.000
202X898LYS10.9020.98253.6645.3545.3540.0000.0000.0000.000
203X899GLY00.0390.01756.544-0.040-0.0400.0000.0000.0000.000
204X900LYS10.9700.96557.2545.3835.3830.0000.0000.0000.000
205X901ASN0-0.043-0.02156.5650.1460.1460.0000.0000.0000.000
206X902TYR00.0440.03654.3550.0430.0430.0000.0000.0000.000
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