FMODB ID: 4GVNN
Calculation Name: 1EF1-C-Xray549
Preferred Name: Moesin
Target Type: SINGLE PROTEIN
Ligand Name:
Ligand 3-letter code:
Ligand of Interest (LOI):
Structure Source: PDB
PDB ID: 1EF1
Chain ID: C
ChEMBL ID: CHEMBL4295733
UniProt ID: P26038
Base Structure: X-ray
Registration Date: 2025-10-11
Reference: Sci Data 11, 1164 (2024).
DOI: https://doi.org/10.1038/s41597-024-03999-2
Apendix: None
Modeling method
| Optimization | MOE:Amber10:EHT |
|---|---|
| Restraint | OptH |
| Protonation | MOE:Protonate 3D |
| Complement | ac.sh, 23 2024 Oct |
| Water | No |
| Procedure | Manual calculation |
| Remarks |
FMO calculation
| FMO method | FMO2-MP2/6-31G(d) |
|---|---|
| Fragmentation | Auto |
| Number of fragment | 90 |
| LigandResidueName | |
| LigandFragmentNumber | 0 |
| LigandCharge | |
| Software | ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922 |
Total energy (hartree)
| FMO2-HF: Electronic energy | -509665.092303 |
|---|---|
| FMO2-HF: Nuclear repulsion | 472410.060479 |
| FMO2-HF: Total energy | -37255.031823 |
| FMO2-MP2: Total energy | -37361.293564 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
| IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
|---|---|---|---|---|---|
| IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
| N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(C:488:ALA)
Summations of interaction energy for
fragment #1(C:488:ALA)
| IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
|---|---|---|---|---|---|
| IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
| 0.82899999999999 | 2.403 | -0.011 | -0.762 | -0.801 | -0.002 |
Interaction energy analysis for fragmet #1(C:488:ALA)
| frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3 | C | 490 | ALA | 0 | 0.009 | 0.001 | 3.827 | 1.855 | 3.429 | -0.011 | -0.762 | -0.801 | -0.002 |
| 4 | C | 491 | SER | 0 | -0.027 | -0.022 | 6.493 | 1.513 | 1.513 | 0.000 | 0.000 | 0.000 | 0.000 |
| 5 | C | 492 | ALA | 0 | -0.002 | -0.002 | 10.289 | 0.414 | 0.414 | 0.000 | 0.000 | 0.000 | 0.000 |
| 6 | C | 493 | ASP | -1 | -0.832 | -0.877 | 13.531 | -17.253 | -17.253 | 0.000 | 0.000 | 0.000 | 0.000 |
| 7 | C | 494 | LEU | 0 | -0.041 | -0.027 | 16.887 | 0.324 | 0.324 | 0.000 | 0.000 | 0.000 | 0.000 |
| 8 | C | 495 | ARG | 1 | 0.856 | 0.911 | 19.620 | 15.077 | 15.077 | 0.000 | 0.000 | 0.000 | 0.000 |
| 9 | C | 496 | ALA | 0 | -0.002 | 0.000 | 23.219 | -0.172 | -0.172 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10 | C | 497 | ASP | -1 | -0.882 | -0.943 | 23.179 | -12.398 | -12.398 | 0.000 | 0.000 | 0.000 | 0.000 |
| 11 | C | 498 | ALA | 0 | -0.048 | -0.027 | 26.424 | 0.086 | 0.086 | 0.000 | 0.000 | 0.000 | 0.000 |
| 12 | C | 499 | MET | 0 | 0.030 | 0.015 | 27.459 | 0.303 | 0.303 | 0.000 | 0.000 | 0.000 | 0.000 |
| 13 | C | 500 | ALA | 0 | -0.030 | -0.003 | 30.906 | 0.238 | 0.238 | 0.000 | 0.000 | 0.000 | 0.000 |
| 14 | C | 501 | LYS | 1 | 0.922 | 0.938 | 34.537 | 7.816 | 7.816 | 0.000 | 0.000 | 0.000 | 0.000 |
| 15 | C | 502 | ASP | -1 | -0.853 | -0.921 | 37.511 | -7.086 | -7.086 | 0.000 | 0.000 | 0.000 | 0.000 |
| 16 | C | 503 | ARG | 1 | 0.869 | 0.901 | 41.300 | 6.617 | 6.617 | 0.000 | 0.000 | 0.000 | 0.000 |
| 17 | C | 504 | SER | 0 | -0.020 | -0.003 | 38.449 | 0.029 | 0.029 | 0.000 | 0.000 | 0.000 | 0.000 |
| 18 | C | 505 | GLU | -1 | -0.838 | -0.923 | 40.373 | -7.108 | -7.108 | 0.000 | 0.000 | 0.000 | 0.000 |
| 19 | C | 506 | GLU | -1 | -0.786 | -0.864 | 42.818 | -6.641 | -6.641 | 0.000 | 0.000 | 0.000 | 0.000 |
| 20 | C | 507 | GLU | -1 | -0.860 | -0.918 | 39.366 | -7.312 | -7.312 | 0.000 | 0.000 | 0.000 | 0.000 |
| 21 | C | 508 | ARG | 1 | 0.866 | 0.959 | 39.650 | 7.268 | 7.268 | 0.000 | 0.000 | 0.000 | 0.000 |
| 22 | C | 509 | THR | 0 | 0.079 | 0.051 | 38.128 | 0.139 | 0.139 | 0.000 | 0.000 | 0.000 | 0.000 |
| 23 | C | 510 | THR | 0 | -0.053 | -0.043 | 41.072 | -0.021 | -0.021 | 0.000 | 0.000 | 0.000 | 0.000 |
| 24 | C | 511 | GLU | -1 | -0.840 | -0.923 | 39.287 | -8.048 | -8.048 | 0.000 | 0.000 | 0.000 | 0.000 |
| 25 | C | 512 | ALA | 0 | -0.031 | -0.035 | 40.868 | -0.126 | -0.126 | 0.000 | 0.000 | 0.000 | 0.000 |
| 26 | C | 513 | GLU | -1 | -0.845 | -0.916 | 40.582 | -7.308 | -7.308 | 0.000 | 0.000 | 0.000 | 0.000 |
| 27 | C | 514 | LYS | 1 | 0.867 | 0.940 | 36.224 | 7.856 | 7.856 | 0.000 | 0.000 | 0.000 | 0.000 |
| 28 | C | 515 | ASN | 0 | -0.049 | -0.026 | 36.674 | -0.185 | -0.185 | 0.000 | 0.000 | 0.000 | 0.000 |
| 29 | C | 516 | GLU | -1 | -0.840 | -0.924 | 38.247 | -7.765 | -7.765 | 0.000 | 0.000 | 0.000 | 0.000 |
| 30 | C | 517 | ARG | 1 | 0.961 | 0.982 | 39.581 | 7.705 | 7.705 | 0.000 | 0.000 | 0.000 | 0.000 |
| 31 | C | 518 | VAL | 0 | -0.013 | -0.006 | 41.311 | 0.209 | 0.209 | 0.000 | 0.000 | 0.000 | 0.000 |
| 32 | C | 519 | GLN | 0 | 0.035 | 0.024 | 41.859 | 0.097 | 0.097 | 0.000 | 0.000 | 0.000 | 0.000 |
| 33 | C | 520 | LYS | 1 | 0.916 | 0.958 | 43.773 | 6.814 | 6.814 | 0.000 | 0.000 | 0.000 | 0.000 |
| 34 | C | 521 | HIS | 0 | 0.001 | -0.009 | 44.609 | 0.215 | 0.215 | 0.000 | 0.000 | 0.000 | 0.000 |
| 35 | C | 522 | LEU | 0 | 0.037 | 0.025 | 46.961 | 0.157 | 0.157 | 0.000 | 0.000 | 0.000 | 0.000 |
| 36 | C | 523 | LYS | 1 | 0.918 | 0.976 | 48.216 | 6.269 | 6.269 | 0.000 | 0.000 | 0.000 | 0.000 |
| 37 | C | 524 | ALA | 0 | -0.010 | 0.011 | 49.650 | 0.112 | 0.112 | 0.000 | 0.000 | 0.000 | 0.000 |
| 38 | C | 525 | LEU | 0 | 0.078 | 0.030 | 50.735 | 0.120 | 0.120 | 0.000 | 0.000 | 0.000 | 0.000 |
| 39 | C | 526 | THR | 0 | -0.075 | -0.060 | 52.689 | 0.105 | 0.105 | 0.000 | 0.000 | 0.000 | 0.000 |
| 40 | C | 527 | SER | 0 | -0.035 | -0.022 | 53.648 | 0.119 | 0.119 | 0.000 | 0.000 | 0.000 | 0.000 |
| 41 | C | 528 | GLU | -1 | -0.950 | -0.982 | 53.184 | -5.759 | -5.759 | 0.000 | 0.000 | 0.000 | 0.000 |
| 42 | C | 529 | LEU | 0 | -0.009 | -0.007 | 56.593 | 0.106 | 0.106 | 0.000 | 0.000 | 0.000 | 0.000 |
| 43 | C | 530 | ALA | 0 | -0.008 | 0.005 | 58.944 | 0.102 | 0.102 | 0.000 | 0.000 | 0.000 | 0.000 |
| 44 | C | 531 | ASN | 0 | -0.049 | -0.030 | 60.780 | 0.060 | 0.060 | 0.000 | 0.000 | 0.000 | 0.000 |
| 45 | C | 532 | ALA | 0 | 0.009 | 0.008 | 62.582 | 0.079 | 0.079 | 0.000 | 0.000 | 0.000 | 0.000 |
| 46 | C | 533 | ARG | 1 | 0.784 | 0.894 | 61.778 | 5.031 | 5.031 | 0.000 | 0.000 | 0.000 | 0.000 |
| 47 | C | 534 | ASP | -1 | -0.738 | -0.829 | 64.599 | -4.421 | -4.421 | 0.000 | 0.000 | 0.000 | 0.000 |
| 48 | C | 535 | GLU | -1 | -0.825 | -0.915 | 64.415 | -4.896 | -4.896 | 0.000 | 0.000 | 0.000 | 0.000 |
| 49 | C | 536 | SER | 0 | -0.073 | -0.051 | 67.820 | 0.019 | 0.019 | 0.000 | 0.000 | 0.000 | 0.000 |
| 50 | C | 537 | LYS | 1 | 0.839 | 0.915 | 68.145 | 4.443 | 4.443 | 0.000 | 0.000 | 0.000 | 0.000 |
| 51 | C | 538 | LYS | 1 | 0.838 | 0.906 | 65.060 | 4.660 | 4.660 | 0.000 | 0.000 | 0.000 | 0.000 |
| 52 | C | 539 | THR | 0 | -0.005 | -0.026 | 64.214 | 0.055 | 0.055 | 0.000 | 0.000 | 0.000 | 0.000 |
| 53 | C | 540 | ALA | 0 | 0.061 | 0.012 | 65.584 | -0.029 | -0.029 | 0.000 | 0.000 | 0.000 | 0.000 |
| 54 | C | 541 | ASN | 0 | 0.031 | 0.008 | 60.932 | -0.021 | -0.021 | 0.000 | 0.000 | 0.000 | 0.000 |
| 55 | C | 542 | ASP | -1 | -0.792 | -0.854 | 60.686 | -5.117 | -5.117 | 0.000 | 0.000 | 0.000 | 0.000 |
| 56 | C | 543 | MET | 0 | -0.004 | -0.001 | 60.986 | -0.056 | -0.056 | 0.000 | 0.000 | 0.000 | 0.000 |
| 57 | C | 544 | ILE | 0 | 0.022 | 0.018 | 59.373 | -0.048 | -0.048 | 0.000 | 0.000 | 0.000 | 0.000 |
| 58 | C | 545 | HIS | 0 | -0.019 | -0.007 | 53.220 | -0.073 | -0.073 | 0.000 | 0.000 | 0.000 | 0.000 |
| 59 | C | 546 | ALA | 0 | 0.004 | -0.004 | 56.886 | -0.092 | -0.092 | 0.000 | 0.000 | 0.000 | 0.000 |
| 60 | C | 547 | GLU | -1 | -0.755 | -0.843 | 58.073 | -5.220 | -5.220 | 0.000 | 0.000 | 0.000 | 0.000 |
| 61 | C | 548 | ASN | 0 | 0.005 | -0.007 | 54.936 | -0.038 | -0.038 | 0.000 | 0.000 | 0.000 | 0.000 |
| 62 | C | 549 | MET | 0 | -0.015 | -0.005 | 50.569 | -0.135 | -0.135 | 0.000 | 0.000 | 0.000 | 0.000 |
| 63 | C | 550 | ARG | 1 | 0.794 | 0.868 | 53.776 | 5.137 | 5.137 | 0.000 | 0.000 | 0.000 | 0.000 |
| 64 | C | 551 | LEU | 0 | -0.062 | -0.024 | 55.584 | -0.015 | -0.015 | 0.000 | 0.000 | 0.000 | 0.000 |
| 65 | C | 552 | GLY | 0 | -0.011 | 0.007 | 51.344 | -0.061 | -0.061 | 0.000 | 0.000 | 0.000 | 0.000 |
| 66 | C | 553 | ARG | 1 | 0.843 | 0.921 | 50.300 | 5.420 | 5.420 | 0.000 | 0.000 | 0.000 | 0.000 |
| 67 | C | 554 | ASP | -1 | -0.771 | -0.882 | 46.787 | -6.676 | -6.676 | 0.000 | 0.000 | 0.000 | 0.000 |
| 68 | C | 555 | LYS | 1 | 0.962 | 0.972 | 47.938 | 6.443 | 6.443 | 0.000 | 0.000 | 0.000 | 0.000 |
| 69 | C | 556 | TYR | 0 | -0.033 | -0.009 | 44.380 | 0.065 | 0.065 | 0.000 | 0.000 | 0.000 | 0.000 |
| 70 | C | 557 | LYS | 1 | 1.018 | 1.010 | 46.754 | 6.529 | 6.529 | 0.000 | 0.000 | 0.000 | 0.000 |
| 71 | C | 558 | THR | 0 | -0.033 | -0.033 | 47.949 | 0.114 | 0.114 | 0.000 | 0.000 | 0.000 | 0.000 |
| 72 | C | 559 | LEU | 0 | -0.020 | -0.011 | 47.190 | 0.075 | 0.075 | 0.000 | 0.000 | 0.000 | 0.000 |
| 73 | C | 560 | ARG | 1 | 0.873 | 0.930 | 43.867 | 6.994 | 6.994 | 0.000 | 0.000 | 0.000 | 0.000 |
| 74 | C | 561 | GLN | 0 | -0.011 | -0.004 | 48.660 | -0.003 | -0.003 | 0.000 | 0.000 | 0.000 | 0.000 |
| 75 | C | 562 | ILE | 0 | 0.004 | -0.005 | 51.867 | 0.055 | 0.055 | 0.000 | 0.000 | 0.000 | 0.000 |
| 76 | C | 563 | ARG | 1 | 0.779 | 0.866 | 46.675 | 6.615 | 6.615 | 0.000 | 0.000 | 0.000 | 0.000 |
| 77 | C | 564 | GLN | 0 | -0.060 | -0.013 | 50.133 | -0.163 | -0.163 | 0.000 | 0.000 | 0.000 | 0.000 |
| 78 | C | 565 | GLY | 0 | 0.068 | 0.043 | 52.611 | 0.105 | 0.105 | 0.000 | 0.000 | 0.000 | 0.000 |
| 79 | C | 566 | ASN | 0 | -0.012 | -0.007 | 54.316 | -0.043 | -0.043 | 0.000 | 0.000 | 0.000 | 0.000 |
| 80 | C | 567 | THR | 0 | 0.038 | -0.014 | 55.636 | 0.009 | 0.009 | 0.000 | 0.000 | 0.000 | 0.000 |
| 81 | C | 568 | LYS | 1 | 0.869 | 0.928 | 57.705 | 4.933 | 4.933 | 0.000 | 0.000 | 0.000 | 0.000 |
| 82 | C | 569 | GLN | 0 | 0.013 | 0.009 | 58.098 | -0.031 | -0.031 | 0.000 | 0.000 | 0.000 | 0.000 |
| 83 | C | 570 | ARG | 1 | 0.920 | 0.949 | 54.262 | 5.808 | 5.808 | 0.000 | 0.000 | 0.000 | 0.000 |
| 84 | C | 571 | ILE | 0 | -0.029 | 0.001 | 59.953 | 0.011 | 0.011 | 0.000 | 0.000 | 0.000 | 0.000 |
| 85 | C | 572 | ASP | -1 | -0.834 | -0.907 | 62.836 | -4.837 | -4.837 | 0.000 | 0.000 | 0.000 | 0.000 |
| 86 | C | 573 | GLU | -1 | -0.964 | -0.970 | 60.392 | -5.196 | -5.196 | 0.000 | 0.000 | 0.000 | 0.000 |
| 87 | C | 574 | PHE | 0 | -0.038 | -0.007 | 62.712 | 0.041 | 0.041 | 0.000 | 0.000 | 0.000 | 0.000 |
| 88 | C | 575 | GLU | -1 | -0.939 | -0.981 | 64.547 | -4.653 | -4.653 | 0.000 | 0.000 | 0.000 | 0.000 |
| 89 | C | 576 | SER | 0 | -0.158 | -0.084 | 66.755 | 0.079 | 0.079 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90 | C | 577 | MET | -1 | -0.983 | -0.973 | 63.201 | -4.610 | -4.610 | 0.000 | 0.000 | 0.000 | 0.000 |