FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 4GVNN

Calculation Name: 1EF1-C-Xray549

Preferred Name: Moesin

Target Type: SINGLE PROTEIN

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 1EF1

Chain ID: C

ChEMBL ID: CHEMBL4295733

UniProt ID: P26038

Base Structure: X-ray

Registration Date: 2025-10-11

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement ac.sh, 23 2024 Oct
Water No
Procedure Manual calculation
Remarks
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 90
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -509665.092303
FMO2-HF: Nuclear repulsion 472410.060479
FMO2-HF: Total energy -37255.031823
FMO2-MP2: Total energy -37361.293564


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(C:488:ALA)


Summations of interaction energy for fragment #1(C:488:ALA)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
0.828999999999992.403-0.011-0.762-0.801-0.002
Interaction energy analysis for fragmet #1(C:488:ALA)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.825 / q_NPA : 0.903
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3C490ALA00.0090.0013.8271.8553.429-0.011-0.762-0.801-0.002
4C491SER0-0.027-0.0226.4931.5131.5130.0000.0000.0000.000
5C492ALA0-0.002-0.00210.2890.4140.4140.0000.0000.0000.000
6C493ASP-1-0.832-0.87713.531-17.253-17.2530.0000.0000.0000.000
7C494LEU0-0.041-0.02716.8870.3240.3240.0000.0000.0000.000
8C495ARG10.8560.91119.62015.07715.0770.0000.0000.0000.000
9C496ALA0-0.0020.00023.219-0.172-0.1720.0000.0000.0000.000
10C497ASP-1-0.882-0.94323.179-12.398-12.3980.0000.0000.0000.000
11C498ALA0-0.048-0.02726.4240.0860.0860.0000.0000.0000.000
12C499MET00.0300.01527.4590.3030.3030.0000.0000.0000.000
13C500ALA0-0.030-0.00330.9060.2380.2380.0000.0000.0000.000
14C501LYS10.9220.93834.5377.8167.8160.0000.0000.0000.000
15C502ASP-1-0.853-0.92137.511-7.086-7.0860.0000.0000.0000.000
16C503ARG10.8690.90141.3006.6176.6170.0000.0000.0000.000
17C504SER0-0.020-0.00338.4490.0290.0290.0000.0000.0000.000
18C505GLU-1-0.838-0.92340.373-7.108-7.1080.0000.0000.0000.000
19C506GLU-1-0.786-0.86442.818-6.641-6.6410.0000.0000.0000.000
20C507GLU-1-0.860-0.91839.366-7.312-7.3120.0000.0000.0000.000
21C508ARG10.8660.95939.6507.2687.2680.0000.0000.0000.000
22C509THR00.0790.05138.1280.1390.1390.0000.0000.0000.000
23C510THR0-0.053-0.04341.072-0.021-0.0210.0000.0000.0000.000
24C511GLU-1-0.840-0.92339.287-8.048-8.0480.0000.0000.0000.000
25C512ALA0-0.031-0.03540.868-0.126-0.1260.0000.0000.0000.000
26C513GLU-1-0.845-0.91640.582-7.308-7.3080.0000.0000.0000.000
27C514LYS10.8670.94036.2247.8567.8560.0000.0000.0000.000
28C515ASN0-0.049-0.02636.674-0.185-0.1850.0000.0000.0000.000
29C516GLU-1-0.840-0.92438.247-7.765-7.7650.0000.0000.0000.000
30C517ARG10.9610.98239.5817.7057.7050.0000.0000.0000.000
31C518VAL0-0.013-0.00641.3110.2090.2090.0000.0000.0000.000
32C519GLN00.0350.02441.8590.0970.0970.0000.0000.0000.000
33C520LYS10.9160.95843.7736.8146.8140.0000.0000.0000.000
34C521HIS00.001-0.00944.6090.2150.2150.0000.0000.0000.000
35C522LEU00.0370.02546.9610.1570.1570.0000.0000.0000.000
36C523LYS10.9180.97648.2166.2696.2690.0000.0000.0000.000
37C524ALA0-0.0100.01149.6500.1120.1120.0000.0000.0000.000
38C525LEU00.0780.03050.7350.1200.1200.0000.0000.0000.000
39C526THR0-0.075-0.06052.6890.1050.1050.0000.0000.0000.000
40C527SER0-0.035-0.02253.6480.1190.1190.0000.0000.0000.000
41C528GLU-1-0.950-0.98253.184-5.759-5.7590.0000.0000.0000.000
42C529LEU0-0.009-0.00756.5930.1060.1060.0000.0000.0000.000
43C530ALA0-0.0080.00558.9440.1020.1020.0000.0000.0000.000
44C531ASN0-0.049-0.03060.7800.0600.0600.0000.0000.0000.000
45C532ALA00.0090.00862.5820.0790.0790.0000.0000.0000.000
46C533ARG10.7840.89461.7785.0315.0310.0000.0000.0000.000
47C534ASP-1-0.738-0.82964.599-4.421-4.4210.0000.0000.0000.000
48C535GLU-1-0.825-0.91564.415-4.896-4.8960.0000.0000.0000.000
49C536SER0-0.073-0.05167.8200.0190.0190.0000.0000.0000.000
50C537LYS10.8390.91568.1454.4434.4430.0000.0000.0000.000
51C538LYS10.8380.90665.0604.6604.6600.0000.0000.0000.000
52C539THR0-0.005-0.02664.2140.0550.0550.0000.0000.0000.000
53C540ALA00.0610.01265.584-0.029-0.0290.0000.0000.0000.000
54C541ASN00.0310.00860.932-0.021-0.0210.0000.0000.0000.000
55C542ASP-1-0.792-0.85460.686-5.117-5.1170.0000.0000.0000.000
56C543MET0-0.004-0.00160.986-0.056-0.0560.0000.0000.0000.000
57C544ILE00.0220.01859.373-0.048-0.0480.0000.0000.0000.000
58C545HIS0-0.019-0.00753.220-0.073-0.0730.0000.0000.0000.000
59C546ALA00.004-0.00456.886-0.092-0.0920.0000.0000.0000.000
60C547GLU-1-0.755-0.84358.073-5.220-5.2200.0000.0000.0000.000
61C548ASN00.005-0.00754.936-0.038-0.0380.0000.0000.0000.000
62C549MET0-0.015-0.00550.569-0.135-0.1350.0000.0000.0000.000
63C550ARG10.7940.86853.7765.1375.1370.0000.0000.0000.000
64C551LEU0-0.062-0.02455.584-0.015-0.0150.0000.0000.0000.000
65C552GLY0-0.0110.00751.344-0.061-0.0610.0000.0000.0000.000
66C553ARG10.8430.92150.3005.4205.4200.0000.0000.0000.000
67C554ASP-1-0.771-0.88246.787-6.676-6.6760.0000.0000.0000.000
68C555LYS10.9620.97247.9386.4436.4430.0000.0000.0000.000
69C556TYR0-0.033-0.00944.3800.0650.0650.0000.0000.0000.000
70C557LYS11.0181.01046.7546.5296.5290.0000.0000.0000.000
71C558THR0-0.033-0.03347.9490.1140.1140.0000.0000.0000.000
72C559LEU0-0.020-0.01147.1900.0750.0750.0000.0000.0000.000
73C560ARG10.8730.93043.8676.9946.9940.0000.0000.0000.000
74C561GLN0-0.011-0.00448.660-0.003-0.0030.0000.0000.0000.000
75C562ILE00.004-0.00551.8670.0550.0550.0000.0000.0000.000
76C563ARG10.7790.86646.6756.6156.6150.0000.0000.0000.000
77C564GLN0-0.060-0.01350.133-0.163-0.1630.0000.0000.0000.000
78C565GLY00.0680.04352.6110.1050.1050.0000.0000.0000.000
79C566ASN0-0.012-0.00754.316-0.043-0.0430.0000.0000.0000.000
80C567THR00.038-0.01455.6360.0090.0090.0000.0000.0000.000
81C568LYS10.8690.92857.7054.9334.9330.0000.0000.0000.000
82C569GLN00.0130.00958.098-0.031-0.0310.0000.0000.0000.000
83C570ARG10.9200.94954.2625.8085.8080.0000.0000.0000.000
84C571ILE0-0.0290.00159.9530.0110.0110.0000.0000.0000.000
85C572ASP-1-0.834-0.90762.836-4.837-4.8370.0000.0000.0000.000
86C573GLU-1-0.964-0.97060.392-5.196-5.1960.0000.0000.0000.000
87C574PHE0-0.038-0.00762.7120.0410.0410.0000.0000.0000.000
88C575GLU-1-0.939-0.98164.547-4.653-4.6530.0000.0000.0000.000
89C576SER0-0.158-0.08466.7550.0790.0790.0000.0000.0000.000
90C577MET-1-0.983-0.97363.201-4.610-4.6100.0000.0000.0000.000