FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: 4J22N

Calculation Name: 3EQ2-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 3EQ2

Chain ID: A

ChEMBL ID:

UniProt ID: Q9I045

Base Structure: X-ray

Registration Date: 2023-09-24

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 387
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -5128315.331264
FMO2-HF: Nuclear repulsion 4979835.338561
FMO2-HF: Total energy -148479.992703
FMO2-MP2: Total energy -148917.187207


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:4:VAL)


Summations of interaction energy for fragment #1(A:4:VAL)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
1.1444.1350.006-1.395-1.6010.001
Interaction energy analysis for fragmet #1(A:4:VAL)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.052 / q_NPA : -0.043
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A6ALA00.0240.0263.806-0.6931.432-0.038-1.074-1.0130.001
4A7THR0-0.015-0.0066.9440.5310.5310.0000.0000.0000.000
5A8LEU0-0.049-0.0397.992-0.202-0.2020.0000.0000.0000.000
6A9LEU00.0090.00711.4020.0660.0660.0000.0000.0000.000
7A10ILE0-0.0170.01414.557-0.053-0.0530.0000.0000.0000.000
8A11ILE0-0.001-0.02617.1890.0020.0020.0000.0000.0000.000
9A12ASP-1-0.845-0.95020.7650.1440.1440.0000.0000.0000.000
10A13ASP-1-0.908-0.94823.2700.1430.1430.0000.0000.0000.000
11A14ASP-1-0.860-0.91725.7580.1410.1410.0000.0000.0000.000
12A15GLU-1-0.934-0.98923.4740.2190.2190.0000.0000.0000.000
13A16VAL00.0010.00823.1280.0160.0160.0000.0000.0000.000
14A17VAL0-0.008-0.01422.6380.0140.0140.0000.0000.0000.000
15A18ARG10.8950.95418.983-0.238-0.2380.0000.0000.0000.000
16A19GLU-1-0.909-0.95318.6380.3520.3520.0000.0000.0000.000
17A20SER0-0.069-0.02418.2910.0460.0460.0000.0000.0000.000
18A21LEU00.000-0.01917.4530.0300.0300.0000.0000.0000.000
19A22ALA00.0210.01714.4280.0500.0500.0000.0000.0000.000
20A23ALA00.0420.02712.9490.1330.1330.0000.0000.0000.000
21A24TYR0-0.004-0.00612.8360.0650.0650.0000.0000.0000.000
22A25LEU0-0.016-0.01311.5960.0250.0250.0000.0000.0000.000
23A26GLU-1-0.961-0.9858.5261.4401.4400.0000.0000.0000.000
24A27ASP-1-0.966-0.9748.0021.1491.1490.0000.0000.0000.000
25A28SER0-0.096-0.0458.681-0.083-0.0830.0000.0000.0000.000
26A29ASN0-0.078-0.0493.516-0.5240.3380.045-0.307-0.5990.000
27A30PHE0-0.049-0.0174.7230.7750.779-0.001-0.0140.0110.000
28A31LYS10.9780.9905.251-1.601-1.6010.0000.0000.0000.000
29A32VAL00.0580.0587.289-0.360-0.3600.0000.0000.0000.000
30A33LEU0-0.023-0.00311.078-0.018-0.0180.0000.0000.0000.000
31A34GLN00.018-0.00613.599-0.029-0.0290.0000.0000.0000.000
32A35ALA0-0.037-0.01216.970-0.015-0.0150.0000.0000.0000.000
33A36LEU0-0.036-0.01120.222-0.009-0.0090.0000.0000.0000.000
34A37ASN00.0360.01323.346-0.012-0.0120.0000.0000.0000.000
35A38GLY00.012-0.00824.3410.0070.0070.0000.0000.0000.000
36A39LEU00.0450.03324.7920.0020.0020.0000.0000.0000.000
37A40GLN00.0190.00122.292-0.002-0.0020.0000.0000.0000.000
38A41GLY00.0500.01720.2990.0100.0100.0000.0000.0000.000
39A42LEU0-0.008-0.00120.389-0.001-0.0010.0000.0000.0000.000
40A43GLN0-0.084-0.04422.233-0.007-0.0070.0000.0000.0000.000
41A44ILE00.001-0.00216.366-0.004-0.0040.0000.0000.0000.000
42A45PHE00.0050.01017.0100.0020.0020.0000.0000.0000.000
43A46GLU-1-0.949-0.96918.6860.0660.0660.0000.0000.0000.000
44A47SER0-0.073-0.04317.490-0.018-0.0180.0000.0000.0000.000
45A48GLU-1-0.916-0.94813.3450.2270.2270.0000.0000.0000.000
46A49GLN0-0.038-0.02914.593-0.006-0.0060.0000.0000.0000.000
47A50PRO0-0.051-0.02811.854-0.015-0.0150.0000.0000.0000.000
48A51ASP-1-0.845-0.9248.749-0.254-0.2540.0000.0000.0000.000
49A52LEU0-0.092-0.05412.257-0.043-0.0430.0000.0000.0000.000
50A53VAL00.0110.00914.4000.0550.0550.0000.0000.0000.000
51A54ILE0-0.019-0.01715.420-0.030-0.0300.0000.0000.0000.000
52A55CYS00.0040.00918.6660.0120.0120.0000.0000.0000.000
53A56ASP-1-0.747-0.86821.9230.1020.1020.0000.0000.0000.000
54A57LEU0-0.0830.06425.2360.0000.0000.0000.0000.0000.000
55A58ARG10.8570.90828.306-0.125-0.1250.0000.0000.0000.000
56A59MET00.0170.03330.413-0.002-0.0020.0000.0000.0000.000
57A60PRO0-0.040-0.05133.1740.0020.0020.0000.0000.0000.000
58A61GLN00.015-0.00629.1530.0030.0030.0000.0000.0000.000
59A62ILE0-0.038-0.00825.5380.0020.0020.0000.0000.0000.000
60A63ASP-1-0.820-0.91427.1650.0970.0970.0000.0000.0000.000
61A64GLY00.0090.00227.922-0.008-0.0080.0000.0000.0000.000
62A65LEU0-0.013-0.02728.0140.0000.0000.0000.0000.0000.000
63A66GLU-1-0.907-0.95929.8060.0520.0520.0000.0000.0000.000
64A67LEU00.0200.01122.457-0.005-0.0050.0000.0000.0000.000
65A68ILE0-0.006-0.00125.201-0.003-0.0030.0000.0000.0000.000
66A69ARG10.9320.96926.333-0.045-0.0450.0000.0000.0000.000
67A70ARG10.9470.98126.819-0.070-0.0700.0000.0000.0000.000
68A71ILE00.0240.01121.249-0.006-0.0060.0000.0000.0000.000
69A72ARG10.8150.90421.473-0.022-0.0220.0000.0000.0000.000
70A73GLN0-0.070-0.03326.155-0.007-0.0070.0000.0000.0000.000
71A74THR0-0.086-0.02623.512-0.002-0.0020.0000.0000.0000.000
72A75ALA0-0.028-0.01824.797-0.001-0.0010.0000.0000.0000.000
73A76SER0-0.0090.01220.038-0.007-0.0070.0000.0000.0000.000
74A77GLU-1-0.907-0.95020.610-0.002-0.0020.0000.0000.0000.000
75A78THR00.0280.01816.218-0.021-0.0210.0000.0000.0000.000
76A79PRO0-0.027-0.00516.0180.0120.0120.0000.0000.0000.000
77A80ILE00.0460.01418.1700.0190.0190.0000.0000.0000.000
78A81ILE0-0.0180.01118.030-0.015-0.0150.0000.0000.0000.000
79A82VAL00.0020.00021.0790.0170.0170.0000.0000.0000.000
80A83LEU00.0280.01121.396-0.008-0.0080.0000.0000.0000.000
81A84SER0-0.065-0.06425.185-0.009-0.0090.0000.0000.0000.000
82A85GLY00.0310.00328.585-0.008-0.0080.0000.0000.0000.000
83A86ALA0-0.082-0.05029.8050.0020.0020.0000.0000.0000.000
84A87GLY00.022-0.03331.653-0.005-0.0050.0000.0000.0000.000
85A88VAL0-0.029-0.01732.471-0.007-0.0070.0000.0000.0000.000
86A89MET00.030-0.00333.318-0.001-0.0010.0000.0000.0000.000
87A90SER0-0.028-0.00934.939-0.002-0.0020.0000.0000.0000.000
88A91ASP-1-0.781-0.89831.7770.0550.0550.0000.0000.0000.000
89A92ALA0-0.036-0.02130.1270.0010.0010.0000.0000.0000.000
90A93VAL0-0.046-0.03630.714-0.004-0.0040.0000.0000.0000.000
91A94GLU-1-0.868-0.93332.8580.0230.0230.0000.0000.0000.000
92A95ALA00.0090.01827.381-0.003-0.0030.0000.0000.0000.000
93A96LEU00.0340.00227.846-0.003-0.0030.0000.0000.0000.000
94A97ARG10.8420.93729.294-0.026-0.0260.0000.0000.0000.000
95A98LEU0-0.087-0.05229.293-0.004-0.0040.0000.0000.0000.000
96A99GLY00.0310.02526.813-0.003-0.0030.0000.0000.0000.000
97A100ALA0-0.051-0.01324.2160.0010.0010.0000.0000.0000.000
98A101ALA0-0.090-0.04621.145-0.010-0.0100.0000.0000.0000.000
99A102ASP-1-0.897-0.96123.1590.0200.0200.0000.0000.0000.000
100A103TYR0-0.041-0.01824.1540.0120.0120.0000.0000.0000.000
101A104LEU0-0.0060.00121.575-0.004-0.0040.0000.0000.0000.000
102A105ILE0-0.014-0.00525.9130.0040.0040.0000.0000.0000.000
103A106LYS10.8940.98726.245-0.123-0.1230.0000.0000.0000.000
104A107PRO0-0.030-0.03227.817-0.008-0.0080.0000.0000.0000.000
105A108LEU00.003-0.00522.032-0.010-0.0100.0000.0000.0000.000
106A109GLU-1-0.906-0.95925.1450.1240.1240.0000.0000.0000.000
107A110ASP-1-0.929-0.96722.2750.0990.0990.0000.0000.0000.000
108A111LEU00.0300.00118.445-0.002-0.0020.0000.0000.0000.000
109A112ALA00.0320.02217.9110.0160.0160.0000.0000.0000.000
110A113VAL0-0.052-0.02918.747-0.013-0.0130.0000.0000.0000.000
111A114LEU00.0320.02117.364-0.017-0.0170.0000.0000.0000.000
112A115GLU-1-0.729-0.86212.8820.3170.3170.0000.0000.0000.000
113A116HIS0-0.0040.01115.899-0.042-0.0420.0000.0000.0000.000
114A117SER0-0.027-0.02718.061-0.026-0.0260.0000.0000.0000.000
115A118VAL00.0440.01913.363-0.021-0.0210.0000.0000.0000.000
116A119ARG10.8930.94010.494-0.102-0.1020.0000.0000.0000.000
117A120ARG10.9010.95915.116-0.005-0.0050.0000.0000.0000.000
118A121ALA0-0.011-0.00617.025-0.021-0.0210.0000.0000.0000.000
119A122LEU00.0380.02110.797-0.020-0.0200.0000.0000.0000.000
120A123ASP-1-0.878-0.93114.115-0.301-0.3010.0000.0000.0000.000
121A124ARG10.8550.90715.5500.0700.0700.0000.0000.0000.000
122A125ALA00.0040.01515.0950.0180.0180.0000.0000.0000.000
123A126TYR0-0.001-0.02510.930-0.012-0.0120.0000.0000.0000.000
124A127LEU0-0.0170.00114.366-0.003-0.0030.0000.0000.0000.000
125A128ARG10.9070.93417.6670.0890.0890.0000.0000.0000.000
126A129VAL00.0190.02014.4720.0150.0150.0000.0000.0000.000
127A130GLU-1-0.822-0.90113.490-0.356-0.3560.0000.0000.0000.000
128A131ASN0-0.060-0.03717.1440.0170.0170.0000.0000.0000.000
129A132GLN00.0140.00020.4020.0180.0180.0000.0000.0000.000
130A133ARG10.9650.98413.9800.2720.2720.0000.0000.0000.000
131A134TYR00.0010.01117.7190.0050.0050.0000.0000.0000.000
132A135ARG10.8780.93922.2440.1050.1050.0000.0000.0000.000
133A136ASP-1-0.898-0.93922.762-0.104-0.1040.0000.0000.0000.000
134A137LYN00.0240.01219.155-0.001-0.0010.0000.0000.0000.000
135A138LEU0-0.0090.00223.6250.0050.0050.0000.0000.0000.000
136A139GLU-1-0.903-0.95326.428-0.074-0.0740.0000.0000.0000.000
137A140ALA00.002-0.00925.7050.0080.0080.0000.0000.0000.000
138A141ALA00.0420.03526.7740.0030.0030.0000.0000.0000.000
139A142ASN00.035-0.00228.5130.0030.0030.0000.0000.0000.000
140A143ARG10.7860.90030.3300.0850.0850.0000.0000.0000.000
141A144GLU-1-0.924-0.95328.314-0.100-0.1000.0000.0000.0000.000
142A145LEU0-0.0290.00132.3080.0020.0020.0000.0000.0000.000
143A146GLN0-0.003-0.01233.9790.0030.0030.0000.0000.0000.000
144A147ALA0-0.0030.00035.5930.0050.0050.0000.0000.0000.000
145A148SER0-0.024-0.02735.8510.0030.0030.0000.0000.0000.000
146A149LEU0-0.002-0.00237.5170.0020.0020.0000.0000.0000.000
147A150ASN00.009-0.01039.9360.0030.0030.0000.0000.0000.000
148A151LEU0-0.0160.01638.6480.0020.0020.0000.0000.0000.000
149A152LEU00.011-0.00339.8900.0020.0020.0000.0000.0000.000
150A153GLN0-0.0110.00443.2480.0020.0020.0000.0000.0000.000
151A154GLU-1-0.915-0.95945.491-0.038-0.0380.0000.0000.0000.000
152A155ASP-1-0.940-0.97845.215-0.046-0.0460.0000.0000.0000.000
153A156GLN0-0.003-0.01245.3060.0030.0030.0000.0000.0000.000
154A157ASN0-0.006-0.00649.1470.0020.0020.0000.0000.0000.000
155A158ALA0-0.022-0.00250.1390.0020.0020.0000.0000.0000.000
156A159GLY00.024-0.00751.0030.0010.0010.0000.0000.0000.000
157A160ARG10.9400.98252.4770.0380.0380.0000.0000.0000.000
158A161GLN0-0.027-0.00255.0960.0020.0020.0000.0000.0000.000
159A162VAL00.006-0.00654.7600.0010.0010.0000.0000.0000.000
160A163GLN00.0200.00856.3130.0010.0010.0000.0000.0000.000
161A164MET0-0.016-0.01058.2330.0000.0000.0000.0000.0000.000
162A165ASN0-0.062-0.04160.5460.0010.0010.0000.0000.0000.000
163A166MET0-0.099-0.01758.0590.0010.0010.0000.0000.0000.000
164A167LEU00.0100.02662.7620.0010.0010.0000.0000.0000.000
165A168PRO0-0.0030.03365.3140.0010.0010.0000.0000.0000.000
166A169VAL0-0.041-0.02469.0880.0000.0000.0000.0000.0000.000
167A170THR0-0.0180.02770.7380.0000.0000.0000.0000.0000.000
168A171PRO0-0.015-0.02672.7200.0000.0000.0000.0000.0000.000
169A172TRP0-0.019-0.00674.6420.0010.0010.0000.0000.0000.000
170A173SER00.0390.00976.3510.0000.0000.0000.0000.0000.000
171A174ILE0-0.049-0.01679.5850.0000.0000.0000.0000.0000.000
172A175GLU-1-0.834-0.90281.377-0.016-0.0160.0000.0000.0000.000
173A176GLY0-0.0040.00184.5600.0000.0000.0000.0000.0000.000
174A177LEU0-0.036-0.00880.2930.0000.0000.0000.0000.0000.000
175A178GLU-1-0.889-0.97076.911-0.020-0.0200.0000.0000.0000.000
176A179PHE0-0.0040.01173.8570.0000.0000.0000.0000.0000.000
177A180SER00.0230.00872.9230.0000.0000.0000.0000.0000.000
178A181HIS00.0340.02066.5810.0000.0000.0000.0000.0000.000
179A182ARG10.9220.96666.5030.0250.0250.0000.0000.0000.000
180A183ILE00.0350.01160.8450.0000.0000.0000.0000.0000.000
181A184ILE0-0.072-0.06461.2140.0010.0010.0000.0000.0000.000
182A185PRO00.0100.01658.1550.0000.0000.0000.0000.0000.000
183A186SER0-0.047-0.04954.4460.0000.0000.0000.0000.0000.000
184A187LEU00.1050.11450.093-0.002-0.0020.0000.0000.0000.000
185A188TYR0-0.081-0.05845.6090.0000.0000.0000.0000.0000.000
186A189LEU0-0.086-0.01349.9860.0010.0010.0000.0000.0000.000
187A190SER00.0600.04952.043-0.001-0.0010.0000.0000.0000.000
188A191GLY00.018-0.00654.7060.0010.0010.0000.0000.0000.000
189A192ASP-1-0.879-0.92355.226-0.033-0.0330.0000.0000.0000.000
190A193PHE0-0.008-0.01058.8780.0010.0010.0000.0000.0000.000
191A194VAL0-0.025-0.01061.4830.0000.0000.0000.0000.0000.000
192A195ASP-1-0.828-0.94065.259-0.025-0.0250.0000.0000.0000.000
193A196TYR0-0.043-0.04067.3900.0000.0000.0000.0000.0000.000
194A197PHE0-0.0270.00767.9920.0010.0010.0000.0000.0000.000
195A198ARG10.9380.96172.5170.0190.0190.0000.0000.0000.000
196A199VAL0-0.010-0.02074.3120.0000.0000.0000.0000.0000.000
197A200ASP-1-0.818-0.89976.867-0.018-0.0180.0000.0000.0000.000
198A201GLU-1-1.005-0.98879.509-0.016-0.0160.0000.0000.0000.000
199A202ARG10.7860.85781.3480.0160.0160.0000.0000.0000.000
200A203ARG10.8090.88878.6430.0170.0170.0000.0000.0000.000
201A204VAL00.0210.01476.0360.0000.0000.0000.0000.0000.000
202A205ALA0-0.0110.00472.3050.0000.0000.0000.0000.0000.000
203A206PHE0-0.014-0.01370.9720.0000.0000.0000.0000.0000.000
204A207TYR00.011-0.01162.9250.0000.0000.0000.0000.0000.000
205A208LEU00.006-0.00363.9210.0000.0000.0000.0000.0000.000
206A209ALA0-0.053-0.03260.6760.0000.0000.0000.0000.0000.000
207A210ASP-1-0.786-0.89559.007-0.035-0.0350.0000.0000.0000.000
208A211VAL0-0.095-0.05253.553-0.001-0.0010.0000.0000.0000.000
209A212SER00.0630.04752.600-0.001-0.0010.0000.0000.0000.000
210A213GLY0-0.022-0.02850.155-0.001-0.0010.0000.0000.0000.000
211A214HIS00.0530.02946.5130.0020.0020.0000.0000.0000.000
212A215GLY0-0.010-0.02748.245-0.002-0.0020.0000.0000.0000.000
213A216ALA00.0650.01147.3190.0020.0020.0000.0000.0000.000
214A217SER0-0.012-0.00146.2960.0010.0010.0000.0000.0000.000
215A218SER00.0370.02848.4070.0000.0000.0000.0000.0000.000
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