FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-04-23

All entries: 37539

Number of unique PDB entries: 7791

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FMODB ID: 4JRQN

Calculation Name: 2AH5-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 2AH5

Chain ID: A

ChEMBL ID:

UniProt ID: A0A0H2

Base Structure: X-ray

Registration Date: 2023-09-20

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 210
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 22 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2466741.626477
FMO2-HF: Nuclear repulsion 2385201.659494
FMO2-HF: Total energy -81539.966983
FMO2-MP2: Total energy -81780.206093


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:MET)


Summations of interaction energy for fragment #1(A:1:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-27.554-14.828.738-7.681-13.785-0.067
Interaction energy analysis for fragmet #1(A:1:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.001 / q_NPA : 0.001
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3SER0-0.058-0.0333.421-3.016-0.6930.009-0.998-1.3340.002
4A4ILE0-0.050-0.0012.395-0.9300.0841.071-0.780-1.304-0.001
5A5THR0-0.013-0.0215.6860.1080.1080.0000.0000.0000.000
6A6ALA0-0.0050.0068.5180.1950.1950.0000.0000.0000.000
7A7ILE0-0.0070.0107.410-0.262-0.2620.0000.0000.0000.000
8A8PHE0-0.019-0.0129.9250.2410.2410.0000.0000.0000.000
9A9PHE00.0570.01812.203-0.129-0.1290.0000.0000.0000.000
10A10ASP-1-0.699-0.80914.961-0.388-0.3880.0000.0000.0000.000
11A11LEU0-0.029-0.02118.204-0.028-0.0280.0000.0000.0000.000
12A12ASP-1-0.756-0.84921.061-0.340-0.3400.0000.0000.0000.000
13A13GLY00.0260.03921.494-0.023-0.0230.0000.0000.0000.000
14A14THR0-0.058-0.05215.756-0.032-0.0320.0000.0000.0000.000
15A15LEU00.0070.00216.592-0.022-0.0220.0000.0000.0000.000
16A16VAL0-0.008-0.02919.8520.0270.0270.0000.0000.0000.000
17A17ASP-1-0.777-0.84023.645-0.276-0.2760.0000.0000.0000.000
18A18SER0-0.034-0.06526.0810.0210.0210.0000.0000.0000.000
19A19SER0-0.036-0.05628.5270.0280.0280.0000.0000.0000.000
20A20ILE0-0.006-0.00230.0450.0190.0190.0000.0000.0000.000
21A21GLY00.0480.02532.7560.0140.0140.0000.0000.0000.000
22A22ILE0-0.042-0.01628.4830.0140.0140.0000.0000.0000.000
23A23HIS00.0250.00532.9540.0090.0090.0000.0000.0000.000
24A24ASN0-0.047-0.02635.2320.0170.0170.0000.0000.0000.000
25A25ALA00.0170.02135.6560.0100.0100.0000.0000.0000.000
26A26PHE00.0090.00632.6090.0100.0100.0000.0000.0000.000
27A27THR0-0.026-0.02838.0440.0110.0110.0000.0000.0000.000
28A28TYR0-0.081-0.05340.7950.0080.0080.0000.0000.0000.000
29A29THR0-0.001-0.02040.0030.0060.0060.0000.0000.0000.000
30A30PHE00.017-0.01238.8590.0050.0050.0000.0000.0000.000
31A31LYS10.7970.89744.0010.1110.1110.0000.0000.0000.000
32A32GLU-1-0.797-0.86645.814-0.100-0.1000.0000.0000.0000.000
33A33LEU0-0.036-0.01743.7040.0040.0040.0000.0000.0000.000
34A34GLY0-0.0330.00047.7170.0040.0040.0000.0000.0000.000
35A35VAL0-0.045-0.02445.2810.0040.0040.0000.0000.0000.000
36A36PRO0-0.029-0.03146.315-0.003-0.0030.0000.0000.0000.000
37A37SER00.0100.00340.698-0.004-0.0040.0000.0000.0000.000
38A38PRO0-0.0100.00638.4330.0040.0040.0000.0000.0000.000
39A39ASP-1-0.781-0.86937.157-0.135-0.1350.0000.0000.0000.000
40A40ALA00.0530.01535.414-0.006-0.0060.0000.0000.0000.000
41A41LYS10.8690.94032.4340.1210.1210.0000.0000.0000.000
42A42THR0-0.021-0.03932.435-0.008-0.0080.0000.0000.0000.000
43A43ILE0-0.0050.00333.447-0.007-0.0070.0000.0000.0000.000
44A44ARG10.9530.96229.0410.1840.1840.0000.0000.0000.000
45A45GLY00.0070.02029.034-0.016-0.0160.0000.0000.0000.000
46A46PHE0-0.011-0.02129.276-0.002-0.0020.0000.0000.0000.000
47A47MET0-0.116-0.01927.481-0.007-0.0070.0000.0000.0000.000
48A48GLY00.0630.02125.144-0.026-0.0260.0000.0000.0000.000
49A49PRO0-0.045-0.00925.655-0.005-0.0050.0000.0000.0000.000
50A50PRO00.0380.02327.555-0.001-0.0010.0000.0000.0000.000
51A51LEU00.0190.03529.9610.0090.0090.0000.0000.0000.000
52A52GLU-1-0.862-0.95432.993-0.163-0.1630.0000.0000.0000.000
53A53SER0-0.004-0.01331.8160.0110.0110.0000.0000.0000.000
54A54SER0-0.018-0.00531.7320.0050.0050.0000.0000.0000.000
55A55PHE00.0260.00634.0520.0080.0080.0000.0000.0000.000
56A56ALA0-0.015-0.01036.6530.0080.0080.0000.0000.0000.000
57A57THR0-0.084-0.04634.8230.0080.0080.0000.0000.0000.000
58A58CYS0-0.103-0.04638.0090.0040.0040.0000.0000.0000.000
59A59LEU00.0110.01641.0840.0030.0030.0000.0000.0000.000
60A60SER00.0250.01942.7220.0000.0000.0000.0000.0000.000
61A61LYS10.9590.97442.1390.0730.0730.0000.0000.0000.000
62A62ASP-1-0.915-0.97743.391-0.084-0.0840.0000.0000.0000.000
63A63GLN0-0.003-0.00445.2180.0010.0010.0000.0000.0000.000
64A64ILE0-0.0260.01138.472-0.005-0.0050.0000.0000.0000.000
65A65SER00.018-0.00340.447-0.007-0.0070.0000.0000.0000.000
66A66GLU-1-0.909-0.93941.851-0.098-0.0980.0000.0000.0000.000
67A67ALA00.0430.01240.615-0.003-0.0030.0000.0000.0000.000
68A68VAL00.0060.00236.564-0.007-0.0070.0000.0000.0000.000
69A69GLN0-0.028-0.00838.789-0.008-0.0080.0000.0000.0000.000
70A70ILE00.0040.00741.257-0.004-0.0040.0000.0000.0000.000
71A71TYR00.0610.03932.546-0.007-0.0070.0000.0000.0000.000
72A72ARG10.8680.89731.7910.1940.1940.0000.0000.0000.000
73A73SER0-0.105-0.04937.577-0.004-0.0040.0000.0000.0000.000
74A74TYR0-0.018-0.03837.5590.0030.0030.0000.0000.0000.000
75A75TYR00.0460.01430.049-0.010-0.0100.0000.0000.0000.000
76A76LYS10.8270.91132.9360.2170.2170.0000.0000.0000.000
77A77ALA0-0.0140.00936.621-0.002-0.0020.0000.0000.0000.000
78A78LYS10.8350.90938.1660.1590.1590.0000.0000.0000.000
79A79GLY00.0280.01135.097-0.007-0.0070.0000.0000.0000.000
80A80ILE0-0.049-0.02130.861-0.012-0.0120.0000.0000.0000.000
81A81TYR0-0.003-0.00731.579-0.016-0.0160.0000.0000.0000.000
82A82GLU-1-0.825-0.85633.699-0.174-0.1740.0000.0000.0000.000
83A83ALA0-0.016-0.01828.710-0.001-0.0010.0000.0000.0000.000
84A84GLN0-0.049-0.02227.6730.0140.0140.0000.0000.0000.000
85A85LEU00.0560.02822.718-0.015-0.0150.0000.0000.0000.000
86A86PHE00.0140.01321.1670.0340.0340.0000.0000.0000.000
87A87PRO0-0.010-0.02822.204-0.021-0.0210.0000.0000.0000.000
88A88GLN0-0.075-0.05718.3760.0050.0050.0000.0000.0000.000
89A89ILE00.0150.02817.571-0.074-0.0740.0000.0000.0000.000
90A90ILE0-0.0090.00117.915-0.057-0.0570.0000.0000.0000.000
91A91ASP-1-0.806-0.89817.064-0.642-0.6420.0000.0000.0000.000
92A92LEU0-0.024-0.00811.502-0.068-0.0680.0000.0000.0000.000
93A93LEU0-0.0030.00113.474-0.150-0.1500.0000.0000.0000.000
94A94GLU-1-0.940-0.95215.156-0.592-0.5920.0000.0000.0000.000
95A95GLU-1-0.913-0.95911.226-1.015-1.0150.0000.0000.0000.000
96A96LEU0-0.037-0.0078.350-0.187-0.1870.0000.0000.0000.000
97A97SER0-0.015-0.03511.073-0.062-0.0620.0000.0000.0000.000
98A98SER0-0.089-0.04411.3600.0520.0520.0000.0000.0000.000
99A99SER0-0.075-0.0448.0340.0570.0570.0000.0000.0000.000
100A100TYR0-0.054-0.0274.242-0.796-0.628-0.001-0.014-0.1530.000
101A101PRO00.0040.03310.9040.1170.1170.0000.0000.0000.000
102A102LEU0-0.013-0.01011.906-0.172-0.1720.0000.0000.0000.000
103A103TYR0-0.068-0.06713.5600.1480.1480.0000.0000.0000.000
104A104ILE0-0.047-0.01615.509-0.053-0.0530.0000.0000.0000.000
105A105THR00.014-0.00316.4660.0180.0180.0000.0000.0000.000
106A106THR0-0.033-0.03118.6920.0090.0090.0000.0000.0000.000
107A107THR00.032-0.00521.3990.0090.0090.0000.0000.0000.000
108A108LYS10.7450.86124.3940.3530.3530.0000.0000.0000.000
109A109ASP-1-0.755-0.83726.179-0.246-0.2460.0000.0000.0000.000
110A110THR00.0150.01025.692-0.014-0.0140.0000.0000.0000.000
111A111SER0-0.010-0.00427.303-0.016-0.0160.0000.0000.0000.000
112A112THR00.002-0.03429.678-0.001-0.0010.0000.0000.0000.000
113A113ALA00.0270.01424.199-0.005-0.0050.0000.0000.0000.000
114A114GLN00.0090.01625.277-0.015-0.0150.0000.0000.0000.000
115A115ASP-1-0.859-0.94126.952-0.250-0.2500.0000.0000.0000.000
116A116MET0-0.0060.02826.158-0.003-0.0030.0000.0000.0000.000
117A117ALA00.0410.02023.724-0.006-0.0060.0000.0000.0000.000
118A118LYS10.8380.91425.3810.3130.3130.0000.0000.0000.000
119A119ASN0-0.035-0.03128.3630.0100.0100.0000.0000.0000.000
120A120LEU0-0.035-0.00526.2120.0130.0130.0000.0000.0000.000
121A121GLU-1-0.963-0.97625.941-0.328-0.3280.0000.0000.0000.000
122A122ILE00.0400.01721.205-0.024-0.0240.0000.0000.0000.000
123A123HIS0-0.037-0.02821.808-0.037-0.0370.0000.0000.0000.000
124A124HIS0-0.031-0.01421.8830.0120.0120.0000.0000.0000.000
125A125PHE00.0010.00917.9520.0010.0010.0000.0000.0000.000
126A126PHE0-0.020-0.02016.120-0.083-0.0830.0000.0000.0000.000
127A127ASP-1-0.827-0.88117.238-0.635-0.6350.0000.0000.0000.000
128A128GLY0-0.039-0.02519.1330.0670.0670.0000.0000.0000.000
129A129ILE0-0.049-0.02519.397-0.049-0.0490.0000.0000.0000.000
130A130TYR0-0.018-0.02819.5150.0650.0650.0000.0000.0000.000
131A131GLY00.0450.00621.848-0.033-0.0330.0000.0000.0000.000
132A132SER0-0.010-0.00524.2930.0170.0170.0000.0000.0000.000
133A133SER0-0.038-0.03826.6190.0120.0120.0000.0000.0000.000
134A134PRO0-0.039-0.04229.0610.0030.0030.0000.0000.0000.000
135A135GLU-1-0.919-0.92925.855-0.229-0.2290.0000.0000.0000.000
136A136ALA00.0220.01323.6980.0020.0020.0000.0000.0000.000
137A137PRO0-0.037-0.00825.724-0.014-0.0140.0000.0000.0000.000
138A138HIS0-0.014-0.01823.863-0.013-0.0130.0000.0000.0000.000
139A139LYS10.8210.88118.3950.4620.4620.0000.0000.0000.000
140A140ALA00.0530.02818.190-0.037-0.0370.0000.0000.0000.000
141A141ASP-1-0.844-0.91419.142-0.245-0.2450.0000.0000.0000.000
142A142VAL0-0.0120.00120.099-0.008-0.0080.0000.0000.0000.000
143A143ILE0-0.0160.00314.403-0.029-0.0290.0000.0000.0000.000
144A144HIS00.0240.00216.799-0.037-0.0370.0000.0000.0000.000
145A145GLN0-0.043-0.03018.685-0.017-0.0170.0000.0000.0000.000
146A146ALA00.0160.02117.0000.0110.0110.0000.0000.0000.000
147A147LEU0-0.022-0.01312.394-0.025-0.0250.0000.0000.0000.000
148A148GLN0-0.038-0.01816.2480.0390.0390.0000.0000.0000.000
149A149THR0-0.065-0.03919.5370.0360.0360.0000.0000.0000.000
150A150HIS0-0.0060.01716.9900.0240.0240.0000.0000.0000.000
151A151GLN0-0.084-0.03817.3470.0030.0030.0000.0000.0000.000
152A152LEU0-0.0250.00712.2400.0100.0100.0000.0000.0000.000
153A153ALA00.0160.00412.4570.0400.0400.0000.0000.0000.000
154A154PRO00.009-0.00411.460-0.121-0.1210.0000.0000.0000.000
155A155GLU-1-0.857-0.9447.859-0.273-0.2730.0000.0000.0000.000
156A156GLN0-0.032-0.0026.500-0.081-0.0810.0000.0000.0000.000
157A157ALA00.0320.0238.249-0.319-0.3190.0000.0000.0000.000
158A158ILE00.0020.0004.837-0.143-0.1430.0000.0000.0000.000
159A159ILE0-0.0220.0047.9940.1200.1200.0000.0000.0000.000
160A160ILE0-0.0030.0089.569-0.028-0.0280.0000.0000.0000.000
161A161GLY00.0400.00611.9940.1140.1140.0000.0000.0000.000
162A162ASP-1-0.766-0.87115.386-0.480-0.4800.0000.0000.0000.000
163A163THR0-0.008-0.03218.1970.0840.0840.0000.0000.0000.000
164A164LYS10.8500.89818.3190.1770.1770.0000.0000.0000.000
165A165PHE00.033-0.00518.9880.0090.0090.0000.0000.0000.000
166A166ASP-1-0.758-0.83215.379-0.539-0.5390.0000.0000.0000.000
167A167MET0-0.0150.00913.298-0.038-0.0380.0000.0000.0000.000
168A168LEU0-0.068-0.02715.0090.0270.0270.0000.0000.0000.000
169A169GLY00.0740.03716.9500.0190.0190.0000.0000.0000.000
170A170ALA0-0.0030.01611.4320.0060.0060.0000.0000.0000.000
171A171ARG10.9330.96513.3470.1450.1450.0000.0000.0000.000
172A172GLU-1-0.966-1.00014.755-0.192-0.1920.0000.0000.0000.000
173A173THR0-0.064-0.05414.4120.0040.0040.0000.0000.0000.000
174A174GLY0-0.021-0.00612.4540.0380.0380.0000.0000.0000.000
175A175ILE0-0.0530.0069.2390.0270.0270.0000.0000.0000.000
176A176GLN00.0540.0292.635-3.956-2.1290.395-1.029-1.192-0.011
177A177LYS10.7960.8847.2550.5500.5500.0000.0000.0000.000
178A178LEU0-0.018-0.0046.7760.0250.0250.0000.0000.0000.000
179A179ALA00.0360.0099.9530.1100.1100.0000.0000.0000.000
180A180ILE0-0.031-0.00713.172-0.055-0.0550.0000.0000.0000.000
181A181THR0-0.013-0.03215.6500.0650.0650.0000.0000.0000.000
182A182TRP0-0.057-0.02714.4640.0410.0410.0000.0000.0000.000
183A183GLY00.0240.02820.6890.0140.0140.0000.0000.0000.000
184A184PHE0-0.090-0.05721.9150.0360.0360.0000.0000.0000.000
185A185GLY0-0.0220.00922.0220.0330.0330.0000.0000.0000.000
186A186GLU-1-0.936-0.97021.983-0.219-0.2190.0000.0000.0000.000
187A187GLN00.0390.00918.162-0.025-0.0250.0000.0000.0000.000
188A188ALA0-0.026-0.02419.6210.0050.0050.0000.0000.0000.000
189A189ASP-1-0.848-0.90621.964-0.197-0.1970.0000.0000.0000.000
190A190LEU00.0410.01116.3060.0150.0150.0000.0000.0000.000
191A191LEU00.0300.00515.250-0.012-0.0120.0000.0000.0000.000
192A192ASN0-0.102-0.03817.0900.0560.0560.0000.0000.0000.000
193A193TYR0-0.019-0.00916.3200.0380.0380.0000.0000.0000.000
194A194GLN0-0.086-0.03513.051-0.019-0.0190.0000.0000.0000.000
195A195PRO00.0230.01911.151-0.003-0.0030.0000.0000.0000.000
196A196ASP-1-0.831-0.9105.788-0.611-0.6110.0000.0000.0000.000
197A197TYR0-0.045-0.0326.333-0.002-0.0020.0000.0000.0000.000
198A198ILE0-0.029-0.0208.2840.0580.0580.0000.0000.0000.000
199A199ALA00.0040.02111.8520.0160.0160.0000.0000.0000.000
200A200HIS0-0.026-0.03013.7950.0830.0830.0000.0000.0000.000
201A201LYS10.8610.90816.1320.3940.3940.0000.0000.0000.000
202A202PRO00.0460.02914.949-0.073-0.0730.0000.0000.0000.000
203A203LEU00.0540.01413.183-0.121-0.1210.0000.0000.0000.000
204A204GLU-1-0.850-0.89911.916-0.556-0.5560.0000.0000.0000.000
205A205VAL00.0180.0089.012-0.049-0.0490.0000.0000.0000.000
206A206LEU00.0310.0187.667-0.456-0.4560.0000.0000.0000.000
207A207ALA0-0.023-0.0076.357-0.516-0.5160.0000.0000.0000.000
208A208TYR0-0.054-0.0252.474-2.738-0.2631.954-1.518-2.910-0.012
209A209PHE00.0160.0012.313-6.515-3.5752.598-2.259-3.278-0.025
210A210GLN0-0.064-0.0232.652-2.679-0.6922.712-1.083-3.614-0.020