FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 4L29N

Calculation Name: 4UZZ-A-Xray540

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 4UZZ

Chain ID: A

ChEMBL ID:

UniProt ID: Q23KH7

Base Structure: X-ray

Registration Date: 2025-07-10

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
Remarks
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 208
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -789230.729671
FMO2-HF: Nuclear repulsion 744646.471624
FMO2-HF: Total energy -44584.258047
FMO2-MP2: Total energy -44712.23869


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:233:ALA)


Summations of interaction energy for fragment #1(A:233:ALA)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-0.6152.207-0.011-1.673-1.1380.006
Interaction energy analysis for fragmet #1(A:233:ALA)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.170 / q_NPA : 0.032
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
4A234ALA0-0.0690.1044.3430.2470.5950.003-0.168-0.1830.000
5A235SER00.025-0.0943.872-2.0530.421-0.014-1.505-0.9550.006
6A235SER0-0.0280.0698.0360.1070.1070.0000.0000.0000.000
7A236PRO00.051-0.0637.2510.3400.3400.0000.0000.0000.000
8A237LYS00.1460.0239.1990.2100.2100.0000.0000.0000.000
9A237LYS10.7771.02912.3670.4270.4270.0000.0000.0000.000
10A238GLN00.068-0.1058.6170.2370.2370.0000.0000.0000.000
11A238GLN0-0.0400.1057.634-0.459-0.4590.0000.0000.0000.000
12A239ILE00.114-0.0627.9160.1730.1730.0000.0000.0000.000
13A239ILE0-0.0910.0934.8290.0270.0270.0000.0000.0000.000
14A240GLN00.116-0.1008.6050.1870.1870.0000.0000.0000.000
15A240GLN0-0.0820.09912.657-0.014-0.0140.0000.0000.0000.000
16A241MET00.071-0.09011.9960.1020.1020.0000.0000.0000.000
17A241MET0-0.0890.08712.3560.0000.0000.0000.0000.0000.000
18A242TRP00.111-0.06310.8900.0440.0440.0000.0000.0000.000
19A242TRP0-0.1000.07510.3470.0400.0400.0000.0000.0000.000
20A243ILE00.073-0.10612.2250.0710.0710.0000.0000.0000.000
21A243ILE0-0.0750.10311.5360.0050.0050.0000.0000.0000.000
22A244ASN00.093-0.06414.0100.0470.0470.0000.0000.0000.000
23A244ASN0-0.1240.06116.3220.0210.0210.0000.0000.0000.000
24A245ASN00.162-0.05115.9090.0240.0240.0000.0000.0000.000
25A245ASN0-0.1400.04615.503-0.022-0.0220.0000.0000.0000.000
26A246VAL00.102-0.07416.0650.0040.0040.0000.0000.0000.000
27A246VAL0-0.0870.09114.7680.0080.0080.0000.0000.0000.000
28A247ALA00.089-0.11417.5090.0270.0270.0000.0000.0000.000
29A247ALA0-0.0950.09318.548-0.004-0.0040.0000.0000.0000.000
30A248GLU00.084-0.10519.6930.0110.0110.0000.0000.0000.000
31A248GLU-1-1.006-0.84821.083-0.082-0.0820.0000.0000.0000.000
32A249ILE00.061-0.08621.382-0.001-0.0010.0000.0000.0000.000
33A249ILE0-0.0760.10021.0920.0050.0050.0000.0000.0000.000
34A250ARG00.069-0.10121.9590.0040.0040.0000.0000.0000.000
35A250ARG10.8281.02720.470-0.125-0.1250.0000.0000.0000.000
36A251LYS00.075-0.07923.4800.0090.0090.0000.0000.0000.000
37A251LYS10.8991.06820.8720.0190.0190.0000.0000.0000.000
38A252THR00.005-0.10925.3520.0000.0000.0000.0000.0000.000
39A252THR0-0.0730.04425.5500.0020.0020.0000.0000.0000.000
40A253LYS00.059-0.07326.945-0.004-0.0040.0000.0000.0000.000
41A253LYS10.8421.05526.032-0.043-0.0430.0000.0000.0000.000
42A254GLN0-0.072-0.10728.147-0.001-0.0010.0000.0000.0000.000
43A254GLN0-0.0780.08027.9350.0070.0070.0000.0000.0000.000
44A255PRO00.136-0.07329.5580.0020.0020.0000.0000.0000.000
45A256HIS00.0480.01630.642-0.006-0.0060.0000.0000.0000.000
46A256HIS0-0.0780.07732.671-0.003-0.0030.0000.0000.0000.000
47A257SER00.059-0.04430.0830.0010.0010.0000.0000.0000.000
48A257SER0-0.0720.03029.4100.0020.0020.0000.0000.0000.000
49A258VAL00.050-0.12726.441-0.008-0.0080.0000.0000.0000.000
50A258VAL0-0.0460.13925.410-0.001-0.0010.0000.0000.0000.000
51A259SER0-0.022-0.06423.6320.0060.0060.0000.0000.0000.000
52A259SER0-0.0580.03622.2650.0070.0070.0000.0000.0000.000
53A260TYR00.085-0.10321.590-0.010-0.0100.0000.0000.0000.000
54A260TYR0-0.0350.11321.4860.0040.0040.0000.0000.0000.000
55A261THR00.026-0.09517.0480.0300.0300.0000.0000.0000.000
56A261THR0-0.1520.01115.023-0.007-0.0070.0000.0000.0000.000
57A262LYS0-0.034-0.13416.3050.0530.0530.0000.0000.0000.000
58A262LYS10.7900.99612.857-0.212-0.2120.0000.0000.0000.000
59A263PRO00.010-0.10117.990-0.023-0.0230.0000.0000.0000.000
60A264MET00.062-0.00121.2410.0020.0020.0000.0000.0000.000
61A264MET0-0.0800.10422.8720.0020.0020.0000.0000.0000.000
62A265PRO00.014-0.08224.2030.0110.0110.0000.0000.0000.000
63A266GLU00.1000.00527.488-0.006-0.0060.0000.0000.0000.000
64A266GLU-1-1.009-0.85029.4370.0980.0980.0000.0000.0000.000
65A267ILE00.070-0.09230.373-0.005-0.0050.0000.0000.0000.000
66A267ILE0-0.0980.07830.852-0.001-0.0010.0000.0000.0000.000
67A268ASP00.103-0.10533.033-0.007-0.0070.0000.0000.0000.000
68A268ASP-1-0.956-0.85434.7460.0730.0730.0000.0000.0000.000
69A269GLU00.089-0.09132.733-0.006-0.0060.0000.0000.0000.000
70A269GLU-1-1.016-0.86429.9100.1000.1000.0000.0000.0000.000
71A270LEU00.029-0.11032.789-0.002-0.0020.0000.0000.0000.000
72A270LEU0-0.0990.07329.436-0.002-0.0020.0000.0000.0000.000
73A271MET00.048-0.09633.722-0.007-0.0070.0000.0000.0000.000
74A271MET0-0.1550.05536.5030.0000.0000.0000.0000.0000.000
75A272GLN00.136-0.08736.869-0.004-0.0040.0000.0000.0000.000
76A272GLN0-0.1380.08336.782-0.002-0.0020.0000.0000.0000.000
77A273GLU00.086-0.08738.536-0.002-0.0020.0000.0000.0000.000
78A273GLU-1-0.996-0.85942.5800.0220.0220.0000.0000.0000.000
79A274TRP0-0.003-0.14539.1170.0050.0050.0000.0000.0000.000
80A274TRP0-0.0750.10435.6320.0000.0000.0000.0000.0000.000
81A275PRO0-0.016-0.09037.5070.0000.0000.0000.0000.0000.000
82A276GLN00.2100.02440.746-0.003-0.0030.0000.0000.0000.000
83A276GLN0-0.1310.07444.7850.0020.0020.0000.0000.0000.000
84A277GLU00.025-0.13141.046-0.004-0.0040.0000.0000.0000.000
85A277GLU-1-0.953-0.83940.0990.0340.0340.0000.0000.0000.000
86A278ILE00.064-0.09938.089-0.004-0.0040.0000.0000.0000.000
87A278ILE0-0.0600.10935.1930.0000.0000.0000.0000.0000.000
88A279GLU00.099-0.09239.283-0.005-0.0050.0000.0000.0000.000
89A279GLU-1-0.960-0.83142.5400.0120.0120.0000.0000.0000.000
90A280GLU00.102-0.11042.173-0.004-0.0040.0000.0000.0000.000
91A280GLU-1-1.008-0.84843.9330.0120.0120.0000.0000.0000.000
92A281ILE00.048-0.11840.108-0.003-0.0030.0000.0000.0000.000
93A281ILE0-0.1030.09138.1940.0000.0000.0000.0000.0000.000
94A282LEU00.029-0.13340.358-0.005-0.0050.0000.0000.0000.000
95A282LEU0-0.0560.12437.028-0.001-0.0010.0000.0000.0000.000
96A283GLN00.073-0.12541.010-0.003-0.0030.0000.0000.0000.000
97A283GLN0-0.1350.07745.390-0.002-0.0020.0000.0000.0000.000
98A284HIS0-0.035-0.11243.364-0.003-0.0030.0000.0000.0000.000
99A284HIS0-0.0890.10243.636-0.002-0.0020.0000.0000.0000.000
100A285LEU00.151-0.09439.402-0.004-0.0040.0000.0000.0000.000
101A285LEU0-0.0650.11836.0890.0000.0000.0000.0000.0000.000
102A286LYS00.037-0.10640.6860.0010.0010.0000.0000.0000.000
103A286LYS10.7340.98343.1650.0130.0130.0000.0000.0000.000
104A287ILE00.022-0.10738.902-0.003-0.0030.0000.0000.0000.000
105A287ILE0-0.0610.10437.7230.0000.0000.0000.0000.0000.000
106A288PRO00.046-0.08136.858-0.001-0.0010.0000.0000.0000.000
107A289SER00.0730.01637.051-0.005-0.0050.0000.0000.0000.000
108A289SER0-0.0720.04838.8080.0020.0020.0000.0000.0000.000
109A290GLU0-0.049-0.11738.380-0.004-0.0040.0000.0000.0000.000
110A290GLU-1-0.937-0.85841.457-0.043-0.0430.0000.0000.0000.000
111A291GLU00.092-0.09836.871-0.001-0.0010.0000.0000.0000.000
112A291GLU-1-0.998-0.84936.025-0.064-0.0640.0000.0000.0000.000
113A292LEU00.056-0.09536.184-0.003-0.0030.0000.0000.0000.000
114A292LEU0-0.0890.07936.9570.0000.0000.0000.0000.0000.000
115A293ASP00.068-0.09832.529-0.001-0.0010.0000.0000.0000.000
116A293ASP-1-0.989-0.85831.522-0.115-0.1150.0000.0000.0000.000
117A294PHE00.046-0.10831.239-0.012-0.0120.0000.0000.0000.000
118A294PHE0-0.0650.10932.1890.0010.0010.0000.0000.0000.000
119A295ASN00.063-0.05930.6950.0080.0080.0000.0000.0000.000
120A295ASN0-0.1310.01028.007-0.003-0.0030.0000.0000.0000.000
121A296LEU00.179-0.08330.8710.0040.0040.0000.0000.0000.000
122A296LEU0-0.0990.10230.448-0.001-0.0010.0000.0000.0000.000
123A297SER00.078-0.04626.3620.0130.0130.0000.0000.0000.000
124A297SER0-0.0380.05424.833-0.005-0.0050.0000.0000.0000.000
125A298ASP00.004-0.10327.1930.0080.0080.0000.0000.0000.000
126A298ASP-1-0.824-0.76426.291-0.133-0.1330.0000.0000.0000.000
127A299PHE00.198-0.05928.2270.0080.0080.0000.0000.0000.000
128A299PHE0-0.0860.10232.3070.0010.0010.0000.0000.0000.000
129A300CYS00.065-0.12028.8090.0100.0100.0000.0000.0000.000
130A300CYS0-0.1710.06328.0940.0010.0010.0000.0000.0000.000
131A301LYS00.078-0.05926.1460.0130.0130.0000.0000.0000.000
132A301LYS10.7340.95923.3410.1330.1330.0000.0000.0000.000
133A302LEU00.123-0.06426.9740.0110.0110.0000.0000.0000.000
134A302LEU0-0.0970.09930.775-0.001-0.0010.0000.0000.0000.000
135A303ALA00.125-0.09430.1860.0080.0080.0000.0000.0000.000
136A303ALA0-0.0900.08931.462-0.001-0.0010.0000.0000.0000.000
137A304CYS00.071-0.09327.6040.0080.0080.0000.0000.0000.000
138A304CYS0-0.1880.03726.999-0.001-0.0010.0000.0000.0000.000
139A305ALA00.129-0.06428.1130.0120.0120.0000.0000.0000.000
140A305ALA0-0.1070.08227.432-0.002-0.0020.0000.0000.0000.000
141A306ILE00.059-0.07128.8030.0080.0080.0000.0000.0000.000
142A306ILE0-0.1130.05932.874-0.001-0.0010.0000.0000.0000.000
143A307LEU00.017-0.10931.2500.0030.0030.0000.0000.0000.000
144A307LEU0-0.0990.06931.377-0.001-0.0010.0000.0000.0000.000
145A308ASP00.117-0.07028.7770.0020.0020.0000.0000.0000.000
146A308ASP-1-0.980-0.84929.1630.0450.0450.0000.0000.0000.000
147A309ILE00.091-0.11027.1730.0160.0160.0000.0000.0000.000
148A309ILE0-0.1470.09626.173-0.001-0.0010.0000.0000.0000.000
149A310PRO0-0.011-0.10221.662-0.011-0.0110.0000.0000.0000.000
150A311VAL00.109-0.00221.7230.0020.0020.0000.0000.0000.000
151A311VAL0-0.0740.12020.695-0.005-0.0050.0000.0000.0000.000
152A312HIS00.098-0.10017.777-0.014-0.0140.0000.0000.0000.000
153A312HIS0-0.1100.09116.7110.0090.0090.0000.0000.0000.000
154A313ASP00.101-0.07014.086-0.039-0.0390.0000.0000.0000.000
155A313ASP-1-0.866-0.80212.5570.1110.1110.0000.0000.0000.000
156A314GLN0-0.021-0.13113.349-0.086-0.0860.0000.0000.0000.000
157A314GLN0-0.0350.09110.550-0.002-0.0020.0000.0000.0000.000
158A315PRO00.015-0.09514.4970.0380.0380.0000.0000.0000.000
159A316ASN00.1290.08013.8700.0280.0280.0000.0000.0000.000
160A316ASN0-0.1170.05213.015-0.077-0.0770.0000.0000.0000.000
161A317GLU00.048-0.09215.096-0.008-0.0080.0000.0000.0000.000
162A317GLU-1-0.887-0.81117.256-0.352-0.3520.0000.0000.0000.000
163A318SER0-0.002-0.10918.2080.0040.0040.0000.0000.0000.000
164A318SER0-0.0420.05820.0280.0030.0030.0000.0000.0000.000
165A319ASN00.081-0.07118.9010.0240.0240.0000.0000.0000.000
166A319ASN0-0.0570.08517.909-0.011-0.0110.0000.0000.0000.000
167A320VAL00.146-0.09019.8530.0250.0250.0000.0000.0000.000
168A320VAL0-0.0840.10422.296-0.002-0.0020.0000.0000.0000.000
169A321ILE00.068-0.09723.1560.0110.0110.0000.0000.0000.000
170A321ILE0-0.0950.08223.696-0.002-0.0020.0000.0000.0000.000
171A322GLU00.045-0.10222.3730.0050.0050.0000.0000.0000.000
172A322GLU-1-0.843-0.77420.0660.0350.0350.0000.0000.0000.000
173A323SER00.045-0.09023.5970.0160.0160.0000.0000.0000.000
174A323SER0-0.0180.04623.483-0.007-0.0070.0000.0000.0000.000
175A324LEU00.108-0.07925.2580.0100.0100.0000.0000.0000.000
176A324LEU0-0.1040.08627.682-0.002-0.0020.0000.0000.0000.000
177A325HIS00.095-0.04827.2320.0010.0010.0000.0000.0000.000
178A325HIS0-0.0550.09226.9270.0040.0040.0000.0000.0000.000
179A326VAL00.090-0.09227.5370.0010.0010.0000.0000.0000.000
180A326VAL0-0.0570.12626.2970.0010.0010.0000.0000.0000.000
181A327LEU00.189-0.05429.0330.0060.0060.0000.0000.0000.000
182A327LEU0-0.1160.08630.119-0.002-0.0020.0000.0000.0000.000
183A328PHE00.019-0.12131.4130.0020.0020.0000.0000.0000.000
184A328PHE0-0.1050.06931.487-0.002-0.0020.0000.0000.0000.000
185A329THR00.005-0.09332.213-0.002-0.0020.0000.0000.0000.000
186A329THR0-0.0520.04931.2320.0010.0010.0000.0000.0000.000
187A330LEU00.163-0.06933.0860.0020.0020.0000.0000.0000.000
188A330LEU0-0.0830.13432.999-0.001-0.0010.0000.0000.0000.000
189A331TYR00.116-0.08634.7890.0020.0020.0000.0000.0000.000
190A331TYR0-0.1350.06436.691-0.001-0.0010.0000.0000.0000.000
191A332SER00.013-0.09936.801-0.001-0.0010.0000.0000.0000.000
192A332SER0-0.0490.07436.957-0.001-0.0010.0000.0000.0000.000
193A333GLU00.054-0.10537.497-0.002-0.0020.0000.0000.0000.000
194A333GLU-1-0.910-0.81536.7770.0340.0340.0000.0000.0000.000
195A334PHE00.115-0.08939.0470.0030.0030.0000.0000.0000.000
196A334PHE0-0.0760.10837.453-0.001-0.0010.0000.0000.0000.000
197A335LYS00.050-0.12041.0300.0000.0000.0000.0000.0000.000
198A335LYS10.7891.02641.721-0.001-0.0010.0000.0000.0000.000
199A336SER00.043-0.09041.993-0.002-0.0020.0000.0000.0000.000
200A336SER0-0.1000.06941.5750.0000.0000.0000.0000.0000.000
201A337ASN00.099-0.07543.144-0.001-0.0010.0000.0000.0000.000
202A337ASN0-0.1360.06041.8090.0010.0010.0000.0000.0000.000
203A338GLN00.112-0.07045.0380.0010.0010.0000.0000.0000.000
204A338GLN0-0.1000.08645.811-0.002-0.0020.0000.0000.0000.000
205A339HIS00.044-0.09446.946-0.002-0.0020.0000.0000.0000.000
206A339HIS0-0.1460.06247.553-0.002-0.0020.0000.0000.0000.000
207A340PHE0-0.070-0.11248.7370.0010.0010.0000.0000.0000.000
208A340PHE0-0.002-0.01151.6740.0000.0000.0000.0000.0000.000