FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: 4LJLN

Calculation Name: 1WLH-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1WLH

Chain ID: A

ChEMBL ID:

UniProt ID: P13466

Base Structure: X-ray

Registration Date: 2023-09-27

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHSide
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 311
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -3091272.273592
FMO2-HF: Nuclear repulsion 2977139.239894
FMO2-HF: Total energy -114133.033698
FMO2-MP2: Total energy -114469.609426


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:547:PRO)


Summations of interaction energy for fragment #1(A:547:PRO)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-12.82-7.8087.049-4.634-7.426-0.023
Interaction energy analysis for fragmet #1(A:547:PRO)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.055 / q_NPA : -0.043
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A549ALA00.0360.0123.749-3.004-0.570-0.011-1.175-1.2490.003
4A550ASP-1-0.761-0.8666.3360.4250.4250.0000.0000.0000.000
5A551PRO00.0580.0538.369-0.060-0.0600.0000.0000.0000.000
6A552GLU-1-0.924-0.97611.485-0.163-0.1630.0000.0000.0000.000
7A553LYS10.6650.7979.4730.1980.1980.0000.0000.0000.000
8A554SER0-0.079-0.0409.997-0.080-0.0800.0000.0000.0000.000
9A555TYR0-0.009-0.00212.0040.0660.0660.0000.0000.0000.000
10A556ALA00.0310.00515.217-0.069-0.0690.0000.0000.0000.000
11A557GLU-1-0.922-0.95118.012-0.348-0.3480.0000.0000.0000.000
12A558GLY00.0960.05221.095-0.023-0.0230.0000.0000.0000.000
13A559PRO0-0.018-0.02224.0040.0180.0180.0000.0000.0000.000
14A560GLY00.0370.02827.058-0.009-0.0090.0000.0000.0000.000
15A561LEU0-0.0180.00022.6870.0060.0060.0000.0000.0000.000
16A562ASP-1-0.898-0.96626.934-0.206-0.2060.0000.0000.0000.000
17A563GLY0-0.031-0.01629.7170.0140.0140.0000.0000.0000.000
18A564GLY00.0550.02131.828-0.011-0.0110.0000.0000.0000.000
19A565GLU-1-0.752-0.85734.308-0.114-0.1140.0000.0000.0000.000
20A566CYS0-0.1140.01836.575-0.006-0.0060.0000.0000.0000.000
21A567PHE00.0050.00937.9500.0040.0040.0000.0000.0000.000
22A568GLN0-0.070-0.01935.231-0.008-0.0080.0000.0000.0000.000
23A569PRO0-0.034-0.01430.526-0.001-0.0010.0000.0000.0000.000
24A570SER0-0.023-0.02029.2840.0040.0040.0000.0000.0000.000
25A571LYS10.8940.95725.2230.2360.2360.0000.0000.0000.000
26A572PHE0-0.043-0.02320.6530.0100.0100.0000.0000.0000.000
27A573LYS10.8810.93817.2160.5320.5320.0000.0000.0000.000
28A574ILE0-0.022-0.01313.8310.0260.0260.0000.0000.0000.000
29A575HIS0-0.032-0.03313.024-0.096-0.0960.0000.0000.0000.000
30A576ALA00.0400.0218.6140.0510.0510.0000.0000.0000.000
31A577VAL0-0.0400.0127.417-0.076-0.0760.0000.0000.0000.000
32A578ASP-1-0.693-0.8492.775-7.903-5.6631.335-1.638-1.937-0.018
33A579PRO0-0.152-0.0884.7240.4480.500-0.001-0.006-0.0440.000
34A580ASP-1-0.874-0.9636.658-0.813-0.8130.0000.0000.0000.000
35A581GLY0-0.015-0.0095.977-0.440-0.4400.0000.0000.0000.000
36A582VAL00.0150.0145.4650.2870.2870.0000.0000.0000.000
37A583HIS00.0680.0634.351-0.807-0.617-0.001-0.029-0.1610.000
38A584ARG10.7290.8462.0183.3133.1115.715-1.994-3.518-0.007
39A585THR0-0.079-0.0643.3470.4120.7100.0120.208-0.517-0.001
40A586ASP-1-0.945-0.9815.846-1.695-1.6950.0000.0000.0000.000
41A587GLY00.0740.0438.2550.3090.3090.0000.0000.0000.000
42A588GLY0-0.034-0.0138.2520.2160.2160.0000.0000.0000.000
43A589ASP-1-0.926-0.9629.162-0.562-0.5620.0000.0000.0000.000
44A590GLY00.0710.04711.4920.1220.1220.0000.0000.0000.000
45A591PHE0-0.036-0.02610.9960.1120.1120.0000.0000.0000.000
46A592VAL00.0090.00515.3470.0290.0290.0000.0000.0000.000
47A593VAL00.0020.00419.1290.0200.0200.0000.0000.0000.000
48A594THR0-0.078-0.04922.1970.0130.0130.0000.0000.0000.000
49A595ILE00.017-0.00125.677-0.004-0.0040.0000.0000.0000.000
50A596GLU-1-0.843-0.89928.614-0.134-0.1340.0000.0000.0000.000
51A597GLY00.0730.01331.988-0.004-0.0040.0000.0000.0000.000
52A598PRO0-0.091-0.03035.0720.0040.0040.0000.0000.0000.000
53A599ALA0-0.043-0.02336.8880.0040.0040.0000.0000.0000.000
54A600PRO0-0.0210.00334.842-0.001-0.0010.0000.0000.0000.000
55A601VAL00.010-0.02130.2020.0010.0010.0000.0000.0000.000
56A602ASP-1-0.934-0.95129.410-0.159-0.1590.0000.0000.0000.000
57A603PRO0-0.057-0.01225.1250.0010.0010.0000.0000.0000.000
58A604VAL0-0.029-0.02524.209-0.006-0.0060.0000.0000.0000.000
59A605MET00.0060.00816.7000.0150.0150.0000.0000.0000.000
60A606VAL0-0.0030.01220.000-0.019-0.0190.0000.0000.0000.000
61A607ASP-1-0.800-0.92316.080-0.580-0.5800.0000.0000.0000.000
62A608ASN0-0.042-0.01313.1850.0310.0310.0000.0000.0000.000
63A609GLY0-0.014-0.01113.5560.1110.1110.0000.0000.0000.000
64A610ASP-1-0.927-0.95811.172-0.973-0.9730.0000.0000.0000.000
65A611GLY00.0100.0169.2470.0120.0120.0000.0000.0000.000
66A612THR0-0.122-0.07210.0890.0680.0680.0000.0000.0000.000
67A613TYR00.012-0.03310.577-0.115-0.1150.0000.0000.0000.000
68A614ASP-1-0.952-0.95416.229-0.440-0.4400.0000.0000.0000.000
69A615VAL00.0270.01420.0180.0200.0200.0000.0000.0000.000
70A616GLU-1-0.937-0.98822.280-0.221-0.2210.0000.0000.0000.000
71A617PHE00.0300.01626.0370.0060.0060.0000.0000.0000.000
72A618GLU-1-0.793-0.89628.976-0.144-0.1440.0000.0000.0000.000
73A619PRO0-0.0340.00432.3090.0070.0070.0000.0000.0000.000
74A620LYS10.8430.90134.6710.1390.1390.0000.0000.0000.000
75A621GLU-1-0.866-0.96438.155-0.085-0.0850.0000.0000.0000.000
76A622ALA00.013-0.01438.1710.0060.0060.0000.0000.0000.000
77A623GLY00.0700.03538.235-0.004-0.0040.0000.0000.0000.000
78A624ASP-1-0.915-0.95835.478-0.110-0.1100.0000.0000.0000.000
79A625TYR0-0.016-0.01731.5220.0040.0040.0000.0000.0000.000
80A626VAL0-0.047-0.01728.141-0.004-0.0040.0000.0000.0000.000
81A627ILE00.0160.00924.060-0.005-0.0050.0000.0000.0000.000
82A628ASN0-0.069-0.04123.4960.0050.0050.0000.0000.0000.000
83A629LEU00.0390.02317.075-0.010-0.0100.0000.0000.0000.000
84A630THR0-0.040-0.01417.6690.0210.0210.0000.0000.0000.000
85A631LEU0-0.006-0.0049.792-0.066-0.0660.0000.0000.0000.000
86A632ASP-1-0.938-0.97811.036-0.503-0.5030.0000.0000.0000.000
87A633GLY0-0.093-0.03814.3190.0840.0840.0000.0000.0000.000
88A634ASP-1-0.900-0.96114.522-0.001-0.0010.0000.0000.0000.000
89A635ASN0-0.076-0.03016.501-0.063-0.0630.0000.0000.0000.000
90A636VAL00.0890.05414.5280.0070.0070.0000.0000.0000.000
91A637ASN0-0.048-0.00415.5910.0780.0780.0000.0000.0000.000
92A638GLY0-0.106-0.04117.4720.0140.0140.0000.0000.0000.000
93A639PHE0-0.072-0.02619.4610.0240.0240.0000.0000.0000.000
94A640PRO00.025-0.01321.9900.0120.0120.0000.0000.0000.000
95A641LYS10.8630.94224.5250.2180.2180.0000.0000.0000.000
96A642THR0-0.021-0.00926.473-0.001-0.0010.0000.0000.0000.000
97A643VAL0-0.0170.02128.6890.0010.0010.0000.0000.0000.000
98A644THR0-0.040-0.02031.3560.0070.0070.0000.0000.0000.000
99A645VAL0-0.065-0.02433.733-0.006-0.0060.0000.0000.0000.000
100A646LYS10.8360.93136.2320.1150.1150.0000.0000.0000.000
101A647PRO00.029-0.03439.548-0.005-0.0050.0000.0000.0000.000
102A648ALA00.0550.01741.413-0.003-0.0030.0000.0000.0000.000
103A649PRO00.0040.00742.8400.0050.0050.0000.0000.0000.000
104A650SER0-0.007-0.00845.892-0.004-0.0040.0000.0000.0000.000
105A651ALA00.0120.01848.6340.0030.0030.0000.0000.0000.000
106A652GLU-1-0.820-0.92150.189-0.060-0.0600.0000.0000.0000.000
107A653HIS0-0.145-0.08451.6480.0030.0030.0000.0000.0000.000
108A654SER00.0320.02350.7900.0010.0010.0000.0000.0000.000
109A655TYR0-0.013-0.01153.489-0.001-0.0010.0000.0000.0000.000
110A656ALA00.0320.01856.024-0.001-0.0010.0000.0000.0000.000
111A657GLU-1-0.935-0.96158.169-0.048-0.0480.0000.0000.0000.000
112A658GLY00.0630.00760.723-0.001-0.0010.0000.0000.0000.000
113A659GLU-1-0.920-0.96463.298-0.041-0.0410.0000.0000.0000.000
114A660GLY00.0410.02762.8780.0010.0010.0000.0000.0000.000
115A661LEU0-0.034-0.01559.707-0.001-0.0010.0000.0000.0000.000
116A662VAL0-0.038-0.00364.0870.0010.0010.0000.0000.0000.000
117A663LYS10.7780.86767.8130.0410.0410.0000.0000.0000.000
118A664VAL00.0430.03865.6510.0000.0000.0000.0000.0000.000
119A665PHE0-0.026-0.00868.9460.0010.0010.0000.0000.0000.000
120A666ASP-1-0.800-0.90769.077-0.039-0.0390.0000.0000.0000.000
121A667ASN0-0.044-0.03270.286-0.001-0.0010.0000.0000.0000.000
122A668ALA0-0.046-0.02768.1800.0010.0010.0000.0000.0000.000
123A669PRO00.0010.02062.8990.0000.0000.0000.0000.0000.000
124A670ALA0-0.0170.00163.1230.0010.0010.0000.0000.0000.000
125A671GLU-1-0.919-0.97060.874-0.051-0.0510.0000.0000.0000.000
126A672PHE0-0.044-0.03657.0390.0010.0010.0000.0000.0000.000
127A673THR0-0.042-0.00955.458-0.001-0.0010.0000.0000.0000.000
128A674ILE0-0.0040.00551.8780.0010.0010.0000.0000.0000.000
129A675PHE0-0.009-0.02053.7210.0000.0000.0000.0000.0000.000
130A676ALA00.0100.01348.539-0.001-0.0010.0000.0000.0000.000
131A677VAL0-0.0250.00250.6530.0010.0010.0000.0000.0000.000
132A678ASP-1-0.801-0.92846.192-0.081-0.0810.0000.0000.0000.000
133A679THR0-0.058-0.01044.4510.0030.0030.0000.0000.0000.000
134A680LYS10.8240.90344.4980.0850.0850.0000.0000.0000.000
135A681GLY0-0.007-0.00649.4370.0030.0030.0000.0000.0000.000
136A682VAL0-0.057-0.02049.7530.0030.0030.0000.0000.0000.000
137A683ALA00.0230.01751.126-0.001-0.0010.0000.0000.0000.000
138A684ARG10.7310.81043.5120.0910.0910.0000.0000.0000.000
139A685THR0-0.040-0.02445.8110.0020.0020.0000.0000.0000.000
140A686ASP-1-0.834-0.85341.987-0.095-0.0950.0000.0000.0000.000
141A687GLY00.0260.02644.5560.0010.0010.0000.0000.0000.000
142A688GLY0-0.028-0.02841.060-0.004-0.0040.0000.0000.0000.000
143A689ASP-1-0.825-0.88540.966-0.103-0.1030.0000.0000.0000.000
144A690PRO0-0.043-0.02341.1150.0030.0030.0000.0000.0000.000
145A691PHE0-0.004-0.01043.8090.0010.0010.0000.0000.0000.000
146A692GLU-1-0.883-0.92846.597-0.095-0.0950.0000.0000.0000.000
147A693VAL00.004-0.01549.3400.0030.0030.0000.0000.0000.000
148A694ALA0-0.0160.01552.9700.0000.0000.0000.0000.0000.000
149A695ILE00.0180.00254.7070.0020.0020.0000.0000.0000.000
150A696ASN0-0.059-0.02757.908-0.002-0.0020.0000.0000.0000.000
151A697GLY00.0750.03060.7090.0010.0010.0000.0000.0000.000
152A698PRO0-0.026-0.01164.2670.0000.0000.0000.0000.0000.000
153A699ASP-1-0.971-0.99565.876-0.048-0.0480.0000.0000.0000.000
154A700GLY00.0000.02663.763-0.001-0.0010.0000.0000.0000.000
155A701LEU0-0.049-0.03461.604-0.002-0.0020.0000.0000.0000.000
156A702VAL0-0.027-0.01755.5290.0000.0000.0000.0000.0000.000
157A703VAL0-0.014-0.01058.6360.0010.0010.0000.0000.0000.000
158A704ASP-1-0.919-0.95954.687-0.068-0.0680.0000.0000.0000.000
159A705ALA00.0050.01455.0490.0020.0020.0000.0000.0000.000
160A706LYS10.8390.92150.6570.0680.0680.0000.0000.0000.000
161A707VAL00.0490.01849.8230.0020.0020.0000.0000.0000.000
162A708THR0-0.088-0.05950.037-0.003-0.0030.0000.0000.0000.000
163A709ASP-1-0.775-0.90245.057-0.086-0.0860.0000.0000.0000.000
164A710ASN0-0.040-0.01448.3270.0000.0000.0000.0000.0000.000
165A711ASN00.000-0.00644.452-0.004-0.0040.0000.0000.0000.000
166A712ASP-1-0.877-0.96647.672-0.065-0.0650.0000.0000.0000.000
167A713GLY00.0850.07448.532-0.001-0.0010.0000.0000.0000.000
168A714THR0-0.106-0.08749.3090.0020.0020.0000.0000.0000.000
169A715TYR00.0410.02046.043-0.003-0.0030.0000.0000.0000.000
170A716GLY00.0290.03151.8870.0020.0020.0000.0000.0000.000
171A717VAL0-0.032-0.02153.845-0.003-0.0030.0000.0000.0000.000
172A718VAL00.001-0.00156.1510.0030.0030.0000.0000.0000.000
173A719TYR0-0.012-0.02057.579-0.002-0.0020.0000.0000.0000.000
174A720ASP-1-0.864-0.92260.152-0.049-0.0490.0000.0000.0000.000
175A721ALA00.001-0.01763.036-0.001-0.0010.0000.0000.0000.000
176A722PRO00.003-0.01064.9100.0020.0020.0000.0000.0000.000
177A723VAL0-0.0150.01067.9780.0010.0010.0000.0000.0000.000
178A724GLU-1-0.861-0.91169.511-0.037-0.0370.0000.0000.0000.000
179A725GLY0-0.029-0.03570.1420.0000.0000.0000.0000.0000.000
180A726ASN0-0.104-0.06466.6820.0010.0010.0000.0000.0000.000
181A727TYR0-0.016-0.02163.270-0.001-0.0010.0000.0000.0000.000
182A728ASN0-0.071-0.04460.631-0.002-0.0020.0000.0000.0000.000
183A729VAL00.0240.01858.217-0.002-0.0020.0000.0000.0000.000
184A730ASN00.0430.00353.8980.0010.0010.0000.0000.0000.000
185A731VAL00.0350.00352.389-0.002-0.0020.0000.0000.0000.000
186A732THR0-0.049-0.03748.9130.0010.0010.0000.0000.0000.000
187A733LEU00.0220.01145.155-0.002-0.0020.0000.0000.0000.000
188A734ARG10.7700.83939.2940.1170.1170.0000.0000.0000.000
189A735GLY00.0420.04344.806-0.001-0.0010.0000.0000.0000.000
190A736ASN0-0.114-0.08146.6900.0050.0050.0000.0000.0000.000
191A737PRO0-0.043-0.02049.8090.0000.0000.0000.0000.0000.000
192A738ILE00.0490.04050.7700.0010.0010.0000.0000.0000.000
193A739LYS10.8570.94453.4330.0620.0620.0000.0000.0000.000
194A740ASN0-0.090-0.04956.5850.0010.0010.0000.0000.0000.000
195A741MET0-0.0100.06255.8170.0010.0010.0000.0000.0000.000
196A742PRO0-0.055-0.04457.281-0.001-0.0010.0000.0000.0000.000
197A743ILE00.011-0.00259.2440.0010.0010.0000.0000.0000.000
198A744ASP-1-0.867-0.90662.683-0.050-0.0500.0000.0000.0000.000
199A745VAL0-0.0020.00763.8470.0010.0010.0000.0000.0000.000
200A746LYS10.8920.94666.7450.0380.0380.0000.0000.0000.000
201A747CYS00.0020.01968.4580.0000.0000.0000.0000.0000.000
202A748ILE0-0.090-0.04870.4990.0010.0010.0000.0000.0000.000
203A749GLU-1-0.865-0.93873.405-0.033-0.0330.0000.0000.0000.000
204A750GLY0-0.002-0.00574.2270.0000.0000.0000.0000.0000.000
205A751ALA0-0.066-0.02475.2590.0000.0000.0000.0000.0000.000
206A752ASN00.0510.02575.198-0.001-0.0010.0000.0000.0000.000
207A753GLY00.007-0.00477.0950.0010.0010.0000.0000.0000.000
208A754GLU-1-0.968-0.99174.730-0.032-0.0320.0000.0000.0000.000
209A755ASP-1-0.920-0.93478.269-0.030-0.0300.0000.0000.0000.000
210A756SER0-0.085-0.04280.8260.0000.0000.0000.0000.0000.000
211A757SER0-0.049-0.02783.1910.0000.0000.0000.0000.0000.000
212A758PHE0-0.036-0.03486.8890.0000.0000.0000.0000.0000.000
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