FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: 4LJMN

Calculation Name: 3E7Q-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 3E7Q

Chain ID: A

ChEMBL ID:

UniProt ID: Q9HUI1

Base Structure: X-ray

Registration Date: 2023-09-27

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHSide
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 208
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2147159.576981
FMO2-HF: Nuclear repulsion 2068671.06554
FMO2-HF: Total energy -78488.511441
FMO2-MP2: Total energy -78720.721811


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:2:ASN)


Summations of interaction energy for fragment #1(A:2:ASN)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-16.875-11.5652.672-2.846-5.1370.019
Interaction energy analysis for fragmet #1(A:2:ASN)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.042 / q_NPA : -0.001
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A4GLU-1-0.929-0.9703.207-4.310-2.231-0.006-0.837-1.2370.001
4A5VAL00.0090.0052.408-0.3430.3730.994-0.615-1.0950.000
5A6ARG10.8950.9592.425-15.321-12.9311.685-1.388-2.6870.018
6A7PHE00.0440.0165.700-0.0720.053-0.001-0.006-0.1180.000
7A8SER0-0.029-0.0327.869-0.190-0.1900.0000.0000.0000.000
8A9ARG10.9410.9676.6452.0082.0080.0000.0000.0000.000
9A10LEU0-0.0270.0149.9970.0380.0380.0000.0000.0000.000
10A11GLU-1-0.818-0.91212.181-0.109-0.1090.0000.0000.0000.000
11A12PRO0-0.028-0.01115.8640.0880.0880.0000.0000.0000.000
12A13GLU-1-0.913-0.96917.9660.2310.2310.0000.0000.0000.000
13A14GLN00.0250.01814.042-0.022-0.0220.0000.0000.0000.000
14A15ARG10.8650.93012.7920.0030.0030.0000.0000.0000.000
15A16LYS10.8720.91915.364-0.174-0.1740.0000.0000.0000.000
16A17ALA00.0190.00518.8180.0170.0170.0000.0000.0000.000
17A18LEU00.0410.02812.2260.0210.0210.0000.0000.0000.000
18A19LEU0-0.029-0.01215.2350.0320.0320.0000.0000.0000.000
19A20ILE0-0.022-0.00818.051-0.020-0.0200.0000.0000.0000.000
20A21GLU-1-0.904-0.94918.9350.6830.6830.0000.0000.0000.000
21A22ALA00.0180.00717.473-0.006-0.0060.0000.0000.0000.000
22A23THR0-0.053-0.04419.625-0.039-0.0390.0000.0000.0000.000
23A24LEU00.0000.00022.646-0.032-0.0320.0000.0000.0000.000
24A25ALA00.0210.03021.587-0.030-0.0300.0000.0000.0000.000
25A26CYS0-0.070-0.05421.606-0.026-0.0260.0000.0000.0000.000
26A27LEU0-0.048-0.00824.215-0.034-0.0340.0000.0000.0000.000
27A28LYS10.8700.92927.054-0.368-0.3680.0000.0000.0000.000
28A29ARG10.9240.97324.101-0.503-0.5030.0000.0000.0000.000
29A30HIS0-0.040-0.02823.421-0.047-0.0470.0000.0000.0000.000
30A31GLY00.1040.07228.526-0.024-0.0240.0000.0000.0000.000
31A32PHE00.0760.01529.2050.0200.0200.0000.0000.0000.000
32A33GLN00.0150.00129.5060.0190.0190.0000.0000.0000.000
33A34GLY00.0210.02628.755-0.003-0.0030.0000.0000.0000.000
34A35ALA00.0410.03825.2310.0360.0360.0000.0000.0000.000
35A36SER0-0.005-0.00922.624-0.024-0.0240.0000.0000.0000.000
36A37VAL00.1340.05118.9250.0390.0390.0000.0000.0000.000
37A38ARG10.9560.97717.705-0.412-0.4120.0000.0000.0000.000
38A39LYS10.7570.87717.904-0.329-0.3290.0000.0000.0000.000
39A40ILE00.0720.04218.6320.0740.0740.0000.0000.0000.000
40A41CYS0-0.024-0.01214.1060.0330.0330.0000.0000.0000.000
41A42ALA0-0.040-0.01813.8530.1940.1940.0000.0000.0000.000
42A43GLU-1-0.934-0.95014.8240.8780.8780.0000.0000.0000.000
43A44ALA00.0350.01414.3260.0740.0740.0000.0000.0000.000
44A45GLY00.0040.02511.0660.2020.2020.0000.0000.0000.000
45A46VAL0-0.087-0.0529.4800.5340.5340.0000.0000.0000.000
46A47SER00.000-0.0038.385-0.142-0.1420.0000.0000.0000.000
47A48VAL00.0730.00310.451-0.110-0.1100.0000.0000.0000.000
48A49GLY0-0.0050.00812.292-0.075-0.0750.0000.0000.0000.000
49A50LEU00.011-0.0037.824-0.075-0.0750.0000.0000.0000.000
50A51ILE0-0.001-0.00111.705-0.060-0.0600.0000.0000.0000.000
51A52ASN0-0.009-0.01715.088-0.003-0.0030.0000.0000.0000.000
52A53HIS0-0.0240.00115.182-0.065-0.0650.0000.0000.0000.000
53A54HIS0-0.106-0.04713.696-0.070-0.0700.0000.0000.0000.000
54A55TYR00.009-0.00318.1320.0120.0120.0000.0000.0000.000
55A56ASP-1-0.848-0.91120.5270.0980.0980.0000.0000.0000.000
56A57GLY0-0.012-0.02322.3360.0010.0010.0000.0000.0000.000
57A58LYS10.7830.88623.200-0.248-0.2480.0000.0000.0000.000
58A59ASP-1-0.853-0.94124.5670.1950.1950.0000.0000.0000.000
59A60ALA00.0270.01923.9740.0030.0030.0000.0000.0000.000
60A61LEU0-0.018-0.00519.4090.0050.0050.0000.0000.0000.000
61A62VAL0-0.017-0.01723.5960.0140.0140.0000.0000.0000.000
62A63ALA00.0320.01526.8290.0000.0000.0000.0000.0000.000
63A64GLU-1-0.826-0.89124.2550.1710.1710.0000.0000.0000.000
64A65ALA0-0.019-0.01624.8140.0030.0030.0000.0000.0000.000
65A66TYR0-0.0150.00026.282-0.003-0.0030.0000.0000.0000.000
66A67LEU00.0490.03328.689-0.008-0.0080.0000.0000.0000.000
67A68ALA0-0.024-0.00626.284-0.011-0.0110.0000.0000.0000.000
68A69VAL0-0.039-0.01527.896-0.002-0.0020.0000.0000.0000.000
69A70THR00.004-0.01530.033-0.013-0.0130.0000.0000.0000.000
70A71GLY00.0180.00831.756-0.012-0.0120.0000.0000.0000.000
71A72ARG10.8190.91029.244-0.252-0.2520.0000.0000.0000.000
72A73VAL00.0200.00831.860-0.006-0.0060.0000.0000.0000.000
73A74MET00.0350.03535.219-0.007-0.0070.0000.0000.0000.000
74A75ARG10.9220.95929.140-0.184-0.1840.0000.0000.0000.000
75A76LEU0-0.016-0.00233.337-0.006-0.0060.0000.0000.0000.000
76A77LEU00.0090.01136.879-0.007-0.0070.0000.0000.0000.000
77A78ARG10.8270.89538.041-0.101-0.1010.0000.0000.0000.000
78A79GLY00.0400.02338.999-0.007-0.0070.0000.0000.0000.000
79A80ALA00.0030.01239.924-0.005-0.0050.0000.0000.0000.000
80A81ILE0-0.006-0.01242.499-0.005-0.0050.0000.0000.0000.000
81A82ASP-1-0.939-0.97142.0720.0730.0730.0000.0000.0000.000
82A83THR0-0.114-0.06341.799-0.004-0.0040.0000.0000.0000.000
83A84ALA0-0.0200.00644.864-0.001-0.0010.0000.0000.0000.000
84A85PRO0-0.006-0.02147.987-0.004-0.0040.0000.0000.0000.000
85A86GLY0-0.036-0.00551.431-0.002-0.0020.0000.0000.0000.000
86A87GLY00.020-0.00953.778-0.001-0.0010.0000.0000.0000.000
87A88ALA00.0120.00153.2760.0040.0040.0000.0000.0000.000
88A89ARG10.8060.85252.936-0.067-0.0670.0000.0000.0000.000
89A90PRO00.0040.00952.5020.0040.0040.0000.0000.0000.000
90A91ARG10.9050.96548.890-0.059-0.0590.0000.0000.0000.000
91A92LEU0-0.012-0.00448.2860.0050.0050.0000.0000.0000.000
92A93SER00.016-0.01648.6830.0040.0040.0000.0000.0000.000
93A94ALA0-0.0280.00145.7820.0060.0060.0000.0000.0000.000
94A95PHE00.0380.00743.7430.0080.0080.0000.0000.0000.000
95A96PHE0-0.005-0.01544.2520.0080.0080.0000.0000.0000.000
96A97GLU-1-0.913-0.96944.9660.1210.1210.0000.0000.0000.000
97A98ALA00.0140.01140.3830.0080.0080.0000.0000.0000.000
98A99SER0-0.070-0.03540.2380.0120.0120.0000.0000.0000.000
99A100PHE0-0.033-0.01841.2200.0070.0070.0000.0000.0000.000
100A101SER0-0.013-0.00938.7780.0050.0050.0000.0000.0000.000
101A102ALA00.022-0.00636.3490.0050.0050.0000.0000.0000.000
102A103GLU-1-0.912-0.96833.9300.1990.1990.0000.0000.0000.000
103A104LEU0-0.030-0.01734.3090.0140.0140.0000.0000.0000.000
104A105LEU00.0190.02536.6730.0010.0010.0000.0000.0000.000
105A106ASP-1-0.839-0.90432.2320.2870.2870.0000.0000.0000.000
106A107PRO00.0120.00634.5260.0080.0080.0000.0000.0000.000
107A108GLN0-0.082-0.02727.6500.0410.0410.0000.0000.0000.000
108A109LEU00.006-0.02627.5510.0150.0150.0000.0000.0000.000
109A110LEU00.0270.04431.183-0.004-0.0040.0000.0000.0000.000
110A111ASP-1-0.788-0.89531.3630.2820.2820.0000.0000.0000.000
111A112ALA0-0.051-0.01829.322-0.003-0.0030.0000.0000.0000.000
112A113TRP00.0550.01431.083-0.013-0.0130.0000.0000.0000.000
113A114LEU00.0220.02034.266-0.013-0.0130.0000.0000.0000.000
114A115ALA0-0.066-0.03531.482-0.011-0.0110.0000.0000.0000.000
115A116PHE0-0.047-0.04428.556-0.004-0.0040.0000.0000.0000.000
116A117TRP00.0520.01133.786-0.007-0.0070.0000.0000.0000.000
117A118GLY0-0.0090.00636.844-0.011-0.0110.0000.0000.0000.000
118A119ALA0-0.041-0.02233.418-0.008-0.0080.0000.0000.0000.000
119A120VAL00.0120.00535.396-0.009-0.0090.0000.0000.0000.000
120A121GLY0-0.0210.00237.655-0.009-0.0090.0000.0000.0000.000
121A122SER0-0.097-0.04336.356-0.004-0.0040.0000.0000.0000.000
122A123ILE00.0070.01431.521-0.007-0.0070.0000.0000.0000.000
123A124GLU-1-0.766-0.86934.9520.0780.0780.0000.0000.0000.000
124A125ALA0-0.010-0.01430.749-0.003-0.0030.0000.0000.0000.000
125A126ILE0-0.010-0.01130.0700.0040.0040.0000.0000.0000.000
126A127GLY00.0490.02033.8200.0010.0010.0000.0000.0000.000
127A128ARG10.8420.90535.639-0.083-0.0830.0000.0000.0000.000
128A129VAL00.0060.01331.911-0.005-0.0050.0000.0000.0000.000
129A130HIS0-0.0190.00935.3620.0030.0030.0000.0000.0000.000
130A131ASP-1-0.890-0.93138.1250.0960.0960.0000.0000.0000.000
131A132HIS0-0.069-0.03536.661-0.009-0.0090.0000.0000.0000.000
132A133SER0-0.028-0.04336.274-0.001-0.0010.0000.0000.0000.000
133A134TYR00.0540.01338.402-0.005-0.0050.0000.0000.0000.000
134A135GLY0-0.015-0.01941.593-0.004-0.0040.0000.0000.0000.000
135A136GLU-1-0.825-0.89337.7970.0970.0970.0000.0000.0000.000
136A137TYR0-0.009-0.02640.758-0.004-0.0040.0000.0000.0000.000
137A138ARG10.9270.98342.458-0.090-0.0900.0000.0000.0000.000
138A139ALA0-0.018-0.00244.812-0.004-0.0040.0000.0000.0000.000
139A140LEU0-0.028-0.00342.190-0.004-0.0040.0000.0000.0000.000
140A141LEU00.0400.02045.805-0.004-0.0040.0000.0000.0000.000
141A142VAL0-0.042-0.03148.367-0.004-0.0040.0000.0000.0000.000
142A143GLY0-0.021-0.00649.393-0.004-0.0040.0000.0000.0000.000
143A144VAL00.0340.01949.596-0.004-0.0040.0000.0000.0000.000
144A145LEU0-0.018-0.01251.653-0.002-0.0020.0000.0000.0000.000
145A146ARG10.8350.90152.673-0.055-0.0550.0000.0000.0000.000
146A147GLN0-0.0130.01853.108-0.001-0.0010.0000.0000.0000.000
147A148LEU00.0200.00655.731-0.001-0.0010.0000.0000.0000.000
148A149ALA0-0.040-0.02357.586-0.002-0.0020.0000.0000.0000.000
149A150GLU-1-0.970-0.96658.9020.0380.0380.0000.0000.0000.000
150A151GLU-1-0.851-0.94157.3930.0530.0530.0000.0000.0000.000
151A152GLY0-0.0220.01061.765-0.001-0.0010.0000.0000.0000.000
152A153GLY00.0060.00463.836-0.001-0.0010.0000.0000.0000.000
153A154TRP0-0.131-0.09058.889-0.001-0.0010.0000.0000.0000.000
154A155ALA00.0200.00864.0140.0000.0000.0000.0000.0000.000
155A156ASP-1-0.842-0.91463.6820.0390.0390.0000.0000.0000.000
156A157PHE00.0340.02156.7230.0010.0010.0000.0000.0000.000
157A158ASP-1-0.860-0.94357.1270.0540.0540.0000.0000.0000.000
158A159ALA00.012-0.00954.6110.0030.0030.0000.0000.0000.000
159A160GLU-1-0.817-0.89151.4290.0640.0640.0000.0000.0000.000
160A161LEU0-0.006-0.00552.6260.0040.0040.0000.0000.0000.000
161A162ALA0-0.028-0.01554.3760.0040.0040.0000.0000.0000.000
162A163ALA00.0550.02049.7000.0030.0030.0000.0000.0000.000
163A164ILE0-0.0120.01049.6680.0060.0060.0000.0000.0000.000
164A165SER0-0.052-0.01350.4160.0040.0040.0000.0000.0000.000
165A166LEU00.0290.01849.2360.0040.0040.0000.0000.0000.000
166A167SER00.014-0.02346.0460.0050.0050.0000.0000.0000.000
167A168ALA0-0.0070.01046.4170.0060.0060.0000.0000.0000.000
168A169LEU0-0.045-0.01448.1020.0040.0040.0000.0000.0000.000
169A170LEU00.0230.00244.9020.0040.0040.0000.0000.0000.000
170A171ASP-1-0.874-0.92743.3760.1370.1370.0000.0000.0000.000
171A172GLY0-0.017-0.00543.8920.0080.0080.0000.0000.0000.000
172A173LEU0-0.045-0.03346.1760.0040.0040.0000.0000.0000.000
173A174TRP0-0.014-0.01236.0050.0060.0060.0000.0000.0000.000
174A175LEU0-0.013-0.01940.8530.0090.0090.0000.0000.0000.000
175A176GLU-1-0.875-0.94142.4280.1510.1510.0000.0000.0000.000
176A177SER0-0.0180.00242.4640.0020.0020.0000.0000.0000.000
177A178GLY0-0.027-0.02639.5310.0070.0070.0000.0000.0000.000
178A179LEU0-0.075-0.02939.9210.0090.0090.0000.0000.0000.000
179A180ASN0-0.021-0.02341.9920.0080.0080.0000.0000.0000.000
180A181PRO00.0250.02040.376-0.007-0.0070.0000.0000.0000.000
181A182ALA0-0.065-0.02543.358-0.005-0.0050.0000.0000.0000.000
182A183THR0-0.072-0.03246.641-0.007-0.0070.0000.0000.0000.000
183A184PHE0-0.071-0.03546.133-0.009-0.0090.0000.0000.0000.000
184A185THR0-0.003-0.00946.7830.0060.0060.0000.0000.0000.000
185A186PRO00.0820.02143.329-0.005-0.0050.0000.0000.0000.000
186A187ARG10.9870.99445.804-0.118-0.1180.0000.0000.0000.000
187A188GLN00.0370.03548.980-0.001-0.0010.0000.0000.0000.000
188A189GLY00.0620.04747.732-0.004-0.0040.0000.0000.0000.000
189A190VAL00.0180.01247.240-0.004-0.0040.0000.0000.0000.000
190A191GLN0-0.043-0.01749.553-0.002-0.0020.0000.0000.0000.000
191A192ILE00.008-0.00251.308-0.005-0.0050.0000.0000.0000.000
192A193CYS0-0.043-0.00649.444-0.002-0.0020.0000.0000.0000.000
193A194GLU-1-0.775-0.86752.0070.0800.0800.0000.0000.0000.000
194A195ALA00.0010.01054.436-0.004-0.0040.0000.0000.0000.000
195A196TRP0-0.024-0.01654.182-0.004-0.0040.0000.0000.0000.000
196A197VAL0-0.012-0.00553.808-0.003-0.0030.0000.0000.0000.000
197A198ASP-1-0.822-0.89656.6860.0670.0670.0000.0000.0000.000
198A199GLY00.0000.00059.522-0.003-0.0030.0000.0000.0000.000
199A200LEU0-0.031-0.01556.851-0.004-0.0040.0000.0000.0000.000
200A201GLU-1-0.868-0.92759.9170.0560.0560.0000.0000.0000.000
201A202ALA0-0.0360.00562.497-0.003-0.0030.0000.0000.0000.000
202A203GLY0-0.072-0.05264.331-0.002-0.0020.0000.0000.0000.000
203A204ALA0-0.0080.00361.775-0.001-0.0010.0000.0000.0000.000
204A205HIS10.9100.95261.570-0.051-0.0510.0000.0000.0000.000
205A206ARG10.9420.97062.588-0.048-0.0480.0000.0000.0000.000
206A207ARG10.9360.96662.821-0.056-0.0560.0000.0000.0000.000
207A208PHE0-0.0210.02656.9610.0010.0010.0000.0000.0000.000
208A209ARG10.7990.89460.000-0.048-0.0480.0000.0000.0000.000