FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-25

All entries: 37426

Number of unique PDB entries: 7782

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FMODB ID: 4N54N

Calculation Name: 6A84-A-Docking63-cpd15a

Preferred Name:

Target Type:

Ligand Name: 2-(4-chloro-1,2-dihydro-1'h-spiro[indole-3,4'-piperidin]-1'-yl)-5,6,7,8-tetrahydroquinazolin-4(3h)-one

ligand 3-letter code: 9SU

PDB ID: 6A84

Chain ID: A

ChEMBL ID:

UniProt ID:

Base Structure: Docking

Registration Date: 2019-08-23

Reference:

DOI: 10.1021/acs.jmedchem.8b01888


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHL
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Manual calculation
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 212
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -2638364.053751
FMO2-HF: Nuclear repulsion 2552155.05473
FMO2-HF: Total energy -86208.999021
FMO2-MP2: Total energy -86457.093717


3D Structure
Snapshot
 
Ligand structure

056

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-122.314-74.39062.620-31.602-78.9440.017


Interactive mode: IFIE and PIEDA for fragment #212(A:1163:056 )


Summations of interaction energy for fragment #212(A:1163:056 )
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-122.314-74.3962.62-31.602-78.944-0.017
Interaction energy analysis for fragmet #212(A:1163:056 )
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.016 / q_NPA : 0.001
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1A952GLY 10.8180.88620.5940.2240.2240.0000.0000.0000.000
2A953THR 00.0680.01016.694-0.022-0.0220.0000.0000.0000.000
3A954ILE 00.0080.02619.798-0.009-0.0090.0000.0000.0000.000
4A955LEU 0-0.005-0.00116.5080.0190.0190.0000.0000.0000.000
5A956ILE 0-0.006-0.00120.472-0.028-0.0280.0000.0000.0000.000
6A957ASP -1-0.851-0.93420.9630.5480.5480.0000.0000.0000.000
7A958LEU 0-0.023-0.00519.039-0.042-0.0420.0000.0000.0000.000
8A959SER 00.0190.01222.5090.0310.0310.0000.0000.0000.000
9A960PRO 00.0640.01723.3480.0210.0210.0000.0000.0000.000
10A961ASP -1-0.905-0.94624.3690.4430.4430.0000.0000.0000.000
11A962ASP -1-0.931-0.95924.2060.4650.4650.0000.0000.0000.000
12A963LYS 10.9720.96624.183-0.379-0.3790.0000.0000.0000.000
13A964GLU -1-0.775-0.83220.0150.6550.6550.0000.0000.0000.000
14A965PHE 0-0.0080.00119.7100.1140.1140.0000.0000.0000.000
15A966GLN 00.000-0.01419.2160.1080.1080.0000.0000.0000.000
16A967SER 0-0.0060.00818.6860.0320.0320.0000.0000.0000.000
17A968VAL 0-0.017-0.00314.0230.1110.1110.0000.0000.0000.000
18A969GLU -1-0.894-0.94815.0041.2711.2710.0000.0000.0000.000
19A970GLU -1-0.881-0.95716.1201.1111.1110.0000.0000.0000.000
20A971GLU -1-0.934-0.94712.6591.3441.3440.0000.0000.0000.000
21A972MET 0-0.093-0.03510.3310.4920.4920.0000.0000.0000.000
22A973GLN 0-0.011-0.03012.3720.2690.2690.0000.0000.0000.000
23A974SER 0-0.0020.01514.9160.0200.0200.0000.0000.0000.000
24A975THR 0-0.0250.00210.2130.1480.1480.0000.0000.0000.000
25A976VAL 0-0.031-0.01110.0020.4300.4300.0000.0000.0000.000
26A977ARG 10.8410.9326.485-1.341-1.3410.0000.0000.0000.000
27A978GLU -1-0.858-0.91611.6790.8770.8770.0000.0000.0000.000
28A979HIS 0-0.051-0.0596.620-0.302-0.3020.0000.0000.0000.000
29A980ARG 10.9080.9159.188-0.227-0.2270.0000.0000.0000.000
30A981ASP -1-0.841-0.91310.2181.0811.0810.0000.0000.0000.000
31A982GLY 00.0190.01012.5070.0000.0000.0000.0000.0000.000
32A983GLY 00.0260.01512.697-0.011-0.0110.0000.0000.0000.000
33A984HIS 0-0.063-0.01512.4510.0850.0850.0000.0000.0000.000
34A985ALA 0-0.031-0.0268.6340.0400.0400.0000.0000.0000.000
35A986GLY 00.031-0.0069.6190.2100.2100.0000.0000.0000.000
36A987GLY 00.0250.01410.4220.0750.0750.0000.0000.0000.000
37A988ILE 0-0.0020.00513.4190.0810.0810.0000.0000.0000.000
38A989PHE 0-0.031-0.01610.1590.0270.0270.0000.0000.0000.000
39A990ASN 00.0630.03314.9830.0700.0700.0000.0000.0000.000
40A991ARG 10.9050.95315.789-0.757-0.7570.0000.0000.0000.000
41A992TYR 0-0.063-0.0679.8550.1470.1470.0000.0000.0000.000
42A993ASN 00.0160.01316.259-0.133-0.1330.0000.0000.0000.000
43A994ILE 00.0120.00114.7230.1210.1210.0000.0000.0000.000
44A995LEU 0-0.048-0.01717.259-0.123-0.1230.0000.0000.0000.000
45A996LYS 10.9280.95717.524-0.667-0.6670.0000.0000.0000.000
46A997ILE 00.0280.03615.6320.1740.1740.0000.0000.0000.000
47A998GLN 0-0.046-0.02316.272-0.072-0.0720.0000.0000.0000.000
48A999LYS 10.9070.94916.275-0.435-0.4350.0000.0000.0000.000
49A1000VAL 00.0110.00714.223-0.121-0.1210.0000.0000.0000.000
50A1001CYS 0-0.0200.01917.440-0.021-0.0210.0000.0000.0000.000
51A1002ASN 00.017-0.03418.467-0.076-0.0760.0000.0000.0000.000
52A1003LYS 10.9380.94820.4410.0860.0860.0000.0000.0000.000
53A1004LYS 10.9700.99019.7300.4620.4620.0000.0000.0000.000
54A1005LEU 0-0.036-0.02215.212-0.037-0.0370.0000.0000.0000.000
55A1006TRP 00.0650.03817.542-0.028-0.0280.0000.0000.0000.000
56A1007GLU -1-0.843-0.90520.026-0.138-0.1380.0000.0000.0000.000
57A1008ARG 10.9400.97115.6070.8010.8010.0000.0000.0000.000
58A1009TYR 0-0.041-0.01914.948-0.018-0.0180.0000.0000.0000.000
59A1010THR 0-0.070-0.04218.3730.0140.0140.0000.0000.0000.000
60A1011HIS 0-0.0080.00721.6930.0400.0400.0000.0000.0000.000
61A1012ARG 10.8900.94717.5240.5230.5230.0000.0000.0000.000
62A1013ARG 10.8850.93918.894-0.095-0.0950.0000.0000.0000.000
63A1014LYS 10.8820.93320.3700.1660.1660.0000.0000.0000.000
64A1015GLU -1-0.840-0.91722.543-0.420-0.4200.0000.0000.0000.000
65A1016VAL 0-0.0070.00117.7060.0100.0100.0000.0000.0000.000
66A1017SER 0-0.029-0.02820.9750.0270.0270.0000.0000.0000.000
67A1018GLU -1-0.890-0.93822.772-0.140-0.1400.0000.0000.0000.000
68A1019GLU -1-0.896-0.90522.370-0.376-0.3760.0000.0000.0000.000
69A1020ASN 0-0.087-0.05819.729-0.021-0.0210.0000.0000.0000.000
70A1021HIS 10.8730.93422.4360.0870.0870.0000.0000.0000.000
71A1022ASN 00.0080.00925.6680.0140.0140.0000.0000.0000.000
72A1023HIS 00.0600.03919.1200.0240.0240.0000.0000.0000.000
73A1024ALA 00.0520.02318.914-0.032-0.0320.0000.0000.0000.000
74A1025ASN 0-0.060-0.02315.2910.0630.0630.0000.0000.0000.000
75A1026GLU -1-0.725-0.84415.0500.2980.2980.0000.0000.0000.000
76A1027ARG 10.8680.93711.144-0.436-0.4360.0000.0000.0000.000
77A1028MET 00.0180.02511.630-0.156-0.1560.0000.0000.0000.000
78A1029LEU 0-0.0050.0016.2440.0140.0140.0000.0000.0000.000
79A1030PHE 00.0260.0185.228-0.088-0.0880.0000.0000.0000.000
80A1031HIS 0-0.026-0.0282.653-6.693-2.5301.758-1.916-4.0050.005
81A1032GLY 00.0400.0151.826-12.105-15.89310.898-3.731-3.3780.042
82A1033SER 00.002-0.0061.948-23.659-20.5387.770-4.760-6.132-0.060
83A1034PRO 00.0460.0352.539-2.5190.5181.639-1.171-3.5050.010
84A1035PHE 0-0.022-0.0182.808-3.479-0.5252.530-1.095-4.3890.010
85A1036VAL 00.0690.0446.205-0.290-0.2900.0000.0000.0000.000
86A1037ASN 00.0460.0128.0470.1620.1620.0000.0000.0000.000
87A1038ALA 0-0.014-0.0108.9690.0620.0620.0000.0000.0000.000
88A1039ILE 00.0270.0255.2580.1560.1560.0000.0000.0000.000
89A1040ILE 00.0430.0349.7750.1730.1730.0000.0000.0000.000
90A1041HIS 0-0.077-0.00112.9350.1350.1350.0000.0000.0000.000
91A1042LYS 10.8110.88912.8160.8520.8520.0000.0000.0000.000
92A1043GLY 00.0140.01912.6110.0120.0120.0000.0000.0000.000
93A1044PHE 00.009-0.0065.889-0.168-0.1680.0000.0000.0000.000
94A1045ASP -1-0.870-0.9468.135-2.519-2.5190.0000.0000.0000.000
95A1046GLU -1-0.868-0.9307.236-3.458-3.4580.0000.0000.0000.000
96A1047ARG 10.9120.9635.6841.8891.8890.0000.0000.0000.000
97A1048HIS 0-0.032-0.0213.458-1.821-1.2180.011-0.079-0.5350.000
98A1049ALA 00.0030.0092.875-5.510-3.2240.457-1.149-1.595-0.011
99A1050TYR 0-0.040-0.0152.100-15.263-7.7407.582-4.264-10.842-0.019
100A1051ILE 00.011-0.0123.0031.8121.6630.1250.954-0.9300.000
101A1052GLY 00.002-0.0035.5150.3420.3420.0000.0000.0000.000
102A1053GLY 0-0.0130.0075.5190.2900.2900.0000.0000.0000.000
103A1054MET 0-0.005-0.0215.7660.1650.1650.0000.0000.0000.000
104A1055PHE 00.0080.0125.3590.2420.2420.0000.0000.0000.000
105A1056GLY 00.0340.0428.6420.0500.0500.0000.0000.0000.000
106A1057ALA 00.0120.0077.100-0.203-0.2030.0000.0000.0000.000
107A1058GLY 00.0730.0306.6920.2820.2820.0000.0000.0000.000
108A1059ILE 0-0.002-0.0044.954-1.568-1.5680.0000.0000.0000.000
109A1060TYR 0-0.016-0.0072.230-2.3230.3825.419-1.982-6.1420.004
110A1061PHE 00.0060.0003.092-0.3641.8070.183-0.658-1.696-0.003
111A1062ALA 00.008-0.0032.209-5.002-3.6042.683-1.136-2.946-0.009
112A1063GLU -1-0.748-0.8523.7391.5151.5950.019-0.003-0.0960.000
113A1064ASN 00.0150.0065.847-0.320-0.3200.0000.0000.0000.000
114A1065SER 00.1030.0605.4531.4771.4770.0000.0000.0000.000
115A1066SER 00.0500.0326.4501.2461.2460.0000.0000.0000.000
116A1067LYS 10.8020.8922.356-2.451-1.3351.972-0.510-2.5790.002
117A1068SER 00.0350.0061.994-13.815-11.6195.951-3.497-4.6500.031
118A1069ASN 00.0100.0293.453-2.418-2.7780.0180.738-0.3960.002
119A1070GLN 00.0180.0195.025-1.310-1.3100.0000.0000.0000.000
120A1071TYR 0-0.002-0.0082.168-13.887-3.9898.656-3.505-15.049-0.015
121A1072VAL 0-0.0160.0033.742-0.906-0.1470.009-0.234-0.535-0.001
122A1073TYR 0-0.005-0.0095.945-0.365-0.3650.0000.0000.0000.000
123A1074GLY 00.0040.0052.771-1.797-0.6780.510-0.742-0.8880.005
124A1075ILE 0-0.015-0.0052.410-4.536-1.1432.799-1.104-5.0870.013
125A1076GLY 00.0100.0144.149-0.981-0.6530.003-0.059-0.2720.000
126A1077GLY 00.0650.0366.200-0.258-0.2580.0000.0000.0000.000
127A1078GLY 0-0.034-0.0126.337-0.134-0.1340.0000.0000.0000.000
128A1079THR 0-0.025-0.0276.975-0.277-0.2770.0000.0000.0000.000
129A1080GLY 00.0350.0179.244-0.150-0.1500.0000.0000.0000.000
130A1081CYS 0-0.098-0.00210.084-0.048-0.0480.0000.0000.0000.000
131A1082PRO 00.017-0.00910.621-0.092-0.0920.0000.0000.0000.000
132A1083VAL 0-0.010-0.00612.666-0.075-0.0750.0000.0000.0000.000
133A1084HIS 00.025-0.02715.978-0.065-0.0650.0000.0000.0000.000
134A1085LYS 10.8950.96112.143-0.477-0.4770.0000.0000.0000.000
135A1086ASP -1-0.768-0.89114.4280.8390.8390.0000.0000.0000.000
136A1087ARG 10.8580.92610.390-0.960-0.9600.0000.0000.0000.000
137A1088SER 0-0.004-0.00312.8360.2290.2290.0000.0000.0000.000
138A1089CYS 0-0.0830.03515.168-0.080-0.0800.0000.0000.0000.000
139A1090TYR 00.010-0.02316.6030.0600.0600.0000.0000.0000.000
140A1091ILE 00.001-0.01219.024-0.021-0.0210.0000.0000.0000.000
141A1092CYS 0-0.033-0.03315.424-0.045-0.0450.0000.0000.0000.000
142A1093HIS 00.0420.02716.3770.1490.1490.0000.0000.0000.000
143A1094ARG 10.7960.90610.922-1.966-1.9660.0000.0000.0000.000
144A1095GLN 0-0.012-0.02610.622-0.254-0.2540.0000.0000.0000.000
145A1096LEU 0-0.0300.0035.1510.4390.535-0.001-0.003-0.0920.000
146A1097LEU 0-0.030-0.0166.610-1.249-1.2490.0000.0000.0000.000
147A1098PHE 00.0430.0267.1641.5121.5120.0000.0000.0000.000
148A1099CYS 0-0.069-0.0387.738-0.879-0.8790.0000.0000.0000.000
149A1100ARG 10.8240.89510.358-0.446-0.4460.0000.0000.0000.000
150A1101VAL 0-0.010-0.0048.443-0.231-0.2310.0000.0000.0000.000
151A1102THR 0-0.006-0.01211.8960.0170.0170.0000.0000.0000.000
152A1103LEU 0-0.0070.0019.686-0.151-0.1510.0000.0000.0000.000
153A1104GLY 00.0520.04413.494-0.110-0.1100.0000.0000.0000.000
154A1105LYS 10.9080.97216.5800.2480.2480.0000.0000.0000.000
155A1106SER 0-0.0060.00712.029-0.069-0.0690.0000.0000.0000.000
156A1107PHE 0-0.023-0.01113.8920.0520.0520.0000.0000.0000.000
157A1108LEU 0-0.017-0.00112.859-0.040-0.0400.0000.0000.0000.000
158A1109GLN 00.0160.01011.027-0.030-0.0300.0000.0000.0000.000
159A1110PHE 00.006-0.00111.321-0.017-0.0170.0000.0000.0000.000
160A1111SER 00.0180.0188.801-0.081-0.0810.0000.0000.0000.000
161A1112ALA 00.0330.02711.0950.0570.0570.0000.0000.0000.000
162A1113MET 0-0.023-0.0147.1240.0600.0600.0000.0000.0000.000
163A1114NME 00.0630.0508.4600.0840.0840.0000.0000.0000.000
164A1114ACE 00.019-0.0189.9520.0960.0960.0000.0000.0000.000
165A1115MET 0-0.070-0.0308.290-0.811-0.8110.0000.0000.0000.000
166A1116ALA 0-0.0270.00610.3850.3430.3430.0000.0000.0000.000
167A1117HIS 00.017-0.00212.803-0.008-0.0080.0000.0000.0000.000
168A1118SER 0-0.017-0.00514.238-0.002-0.0020.0000.0000.0000.000
169A1119PRO 00.0180.00814.0500.0320.0320.0000.0000.0000.000
170A1120PRO 00.0740.02417.2920.0260.0260.0000.0000.0000.000
171A1121GLY 0-0.0010.01720.8800.0330.0330.0000.0000.0000.000
172A1122HIS 0-0.091-0.05516.1970.0930.0930.0000.0000.0000.000
173A1123HIS 00.005-0.02715.962-0.036-0.0360.0000.0000.0000.000
174A1124SER 0-0.031-0.03210.726-0.046-0.0460.0000.0000.0000.000
175A1125VAL 00.0030.0119.4420.0640.0640.0000.0000.0000.000
176A1126THR 0-0.012-0.0278.7520.0420.0420.0000.0000.0000.000
177A1127GLY 00.0310.0117.257-0.010-0.0100.0000.0000.0000.000
178A1128ARG 10.9830.9707.651-0.080-0.0800.0000.0000.0000.000
179A1129PRO 0-0.036-0.0257.705-0.046-0.0460.0000.0000.0000.000
180A1130SER 00.005-0.00110.3310.0760.0760.0000.0000.0000.000
181A1131VAL 0-0.0230.00412.9790.0180.0180.0000.0000.0000.000
182A1132ASN 0-0.015-0.02011.3320.0360.0360.0000.0000.0000.000
183A1133GLY 00.0410.02012.8510.0020.0020.0000.0000.0000.000
184A1134LEU 00.0210.00513.6630.0170.0170.0000.0000.0000.000
185A1135ALA 0-0.114-0.0488.4320.1460.1460.0000.0000.0000.000
186A1136LEU 00.0160.0158.056-0.148-0.1480.0000.0000.0000.000
187A1137ALA 0-0.058-0.0236.913-0.204-0.2040.0000.0000.0000.000
188A1138GLU -1-0.900-0.9572.339-6.245-3.2591.630-1.675-2.940-0.023
189A1139TYR 0-0.090-0.0844.109-0.278-0.1190.000-0.014-0.1440.000
190A1140VAL 0-0.0180.0034.753-0.269-0.139-0.001-0.007-0.1210.000
191A1141ILE 00.0120.0097.0940.2710.2710.0000.0000.0000.000
192A1142TYR 00.001-0.0309.667-0.406-0.4060.0000.0000.0000.000
193A1143ARG 10.9690.98811.6370.7610.7610.0000.0000.0000.000
194A1144GLY 00.0610.03610.7130.0530.0530.0000.0000.0000.000
195A1145GLU -1-0.930-0.98611.705-0.847-0.8470.0000.0000.0000.000
196A1146GLN 0-0.051-0.03413.5170.1280.1280.0000.0000.0000.000
197A1147ALA 00.0170.01110.5600.2150.2150.0000.0000.0000.000
198A1148TYR 0-0.037-0.04212.642-0.318-0.3180.0000.0000.0000.000
199A1149PRO 0-0.022-0.01510.5100.2980.2980.0000.0000.0000.000
200A1150GLU -1-0.804-0.88811.9410.5240.5240.0000.0000.0000.000
201A1151TYR 0-0.034-0.05712.638-0.143-0.1430.0000.0000.0000.000
202A1152LEU 0-0.032-0.01611.6200.3020.3020.0000.0000.0000.000
203A1153ILE 00.0270.01210.654-0.182-0.1820.0000.0000.0000.000
204A1154THR 0-0.020-0.01512.0720.1590.1590.0000.0000.0000.000
205A1155TYR 0-0.011-0.0309.2130.1260.1260.0000.0000.0000.000
206A1156GLN 00.0270.01914.8160.0030.0030.0000.0000.0000.000
207A1157ILE 0-0.0160.00512.9000.0770.0770.0000.0000.0000.000
208A1158MET 00.003-0.00415.624-0.132-0.1320.0000.0000.0000.000
209A1159ARG 10.9280.95718.593-0.605-0.6050.0000.0000.0000.000
210A1160PRO 0-0.060-0.02819.180-0.019-0.0190.0000.0000.0000.000
211A1161GLU -2-1.787-1.87021.7481.1851.1850.0000.0000.0000.000