FMODB ID: 4N64N
Calculation Name: 1L2Y-A-MD57-56700ps
Preferred Name:
Target Type:
Ligand Name:
ligand 3-letter code:
PDB ID: 2OTU
Chain ID: A
UniProt ID: A2NN81
Base Structure: MD
Registration Date: 2019-08-13
Reference:
Modeling method
Optimization | BaseStructure_original |
---|---|
Restraint | BaseStructure_original |
Protonation | BaseStructure_original |
Complement | No |
Water | No |
Procedure | Manual calculation |
FMO calculation
FMO method | FMO2-MP2/6-31G(d) |
---|---|
Fragmentation | Auto |
Number of fragment | 10 |
LigandCharge | |
Software | MIZUHO/ABINIT-MP 3.0 |
Total energy (hartree)
FMO2-HF: Electronic energy | -25023.228643 |
---|---|
FMO2-HF: Nuclear repulsion | 20420.895173 |
FMO2-HF: Total energy | -4602.33347 |
FMO2-MP2: Total energy | -4615.795704 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
"IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(:1:GLN )
Summations of interaction energy for
fragment #1(:1:GLN )
IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
-162.257 | -156.563 | 31.545 | -14.391 | -22.85 | -0.169 |
Interaction energy analysis for fragmet #1(:1:GLN )
frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | 3 | GLN | 0 | 0.022 | 0.009 | 2.082 | -12.817 | -14.611 | 10.182 | -1.448 | -6.940 | -0.016 | |
4 | 4 | GLN | 0 | 0.026 | 0.005 | 4.023 | 2.263 | 2.470 | 0.005 | -0.011 | -0.201 | 0.000 | |
5 | 5 | GLN | 0 | -0.080 | -0.066 | 5.711 | -3.531 | -3.531 | 0.000 | 0.000 | 0.000 | 0.000 | |
6 | 6 | GLN | 0 | 0.032 | 0.045 | 1.959 | -15.512 | -15.798 | 6.355 | -2.709 | -3.361 | -0.033 | |
7 | 7 | GLN | 0 | 0.035 | 0.041 | 3.367 | 2.006 | 3.071 | 0.081 | -0.283 | -0.863 | -0.002 | |
8 | 8 | GLN | 0 | 0.060 | -0.001 | 2.269 | -19.862 | -17.484 | 5.301 | -3.852 | -3.828 | -0.044 | |
9 | 9 | GLN | 0 | -0.016 | -0.016 | 2.554 | -19.351 | -16.391 | 1.893 | -2.331 | -2.522 | -0.023 | |
10 | 10 | GLN | -1 | -0.889 | -0.924 | 2.052 | -95.453 | -94.289 | 7.728 | -3.757 | -5.135 | -0.051 |