FMODB ID: 4NJJN
Calculation Name: 1L2Y-A-MD56-8700ps
Preferred Name:
Target Type:
Ligand Name:
ligand 3-letter code:
PDB ID: 2OTU
Chain ID: A
UniProt ID: A2NN81
Base Structure: MD
Registration Date: 2019-08-13
Reference:
Modeling method
Optimization | BaseStructure_original |
---|---|
Restraint | BaseStructure_original |
Protonation | BaseStructure_original |
Complement | No |
Water | No |
Procedure | Manual calculation |
FMO calculation
FMO method | FMO2-MP2/6-31G(d) |
---|---|
Fragmentation | Auto |
Number of fragment | 10 |
LigandResidueName | |
LigandFragmentNumber | 0 |
LigandCharge | |
Software | MIZUHO/ABINIT-MP 3.0 |
Total energy (hartree)
FMO2-HF: Electronic energy | -23180.934295 |
---|---|
FMO2-HF: Nuclear repulsion | 18578.749924 |
FMO2-HF: Total energy | -4602.184371 |
FMO2-MP2: Total energy | -4615.607346 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
"IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(:1:GLN )
Summations of interaction energy for
fragment #1(:1:GLN )
IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
-63.913 | -57.576 | 13.08 | -8.086 | -11.329 | -0.069 |
Interaction energy analysis for fragmet #1(:1:GLN )
frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | 3 | GLN | 0 | 0.051 | 0.018 | 2.699 | -5.422 | -3.014 | 0.517 | -1.294 | -1.631 | -0.010 | |
4 | 4 | GLN | 0 | -0.020 | -0.020 | 5.171 | 1.936 | 2.080 | -0.001 | -0.004 | -0.139 | 0.000 | |
5 | 5 | GLN | 0 | 0.011 | 0.027 | 2.619 | -10.133 | -7.205 | 0.823 | -1.565 | -2.186 | -0.013 | |
6 | 6 | GLN | 0 | 0.031 | -0.004 | 1.792 | -17.577 | -21.526 | 10.143 | -3.435 | -2.759 | -0.043 | |
7 | 7 | GLN | 0 | 0.045 | 0.039 | 3.096 | 2.924 | 4.022 | 0.221 | -0.416 | -0.902 | 0.001 | |
8 | 8 | GLN | 0 | -0.086 | -0.055 | 2.620 | -11.515 | -8.064 | 1.335 | -1.380 | -3.405 | -0.003 | |
9 | 9 | GLN | 0 | -0.015 | -0.007 | 3.503 | 7.530 | 7.787 | 0.042 | 0.008 | -0.307 | -0.001 | |
10 | 10 | GLN | -1 | -0.916 | -0.938 | 6.527 | -31.656 | -31.656 | 0.000 | 0.000 | 0.000 | 0.000 |