FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-07-23

All entries: 44592

Number of unique PDB entries: 7794

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FMODB ID: 4QJMN

Calculation Name: 5TUV-B-Xray540

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 5TUV

Chain ID: B

ChEMBL ID:

UniProt ID: Q15329

Base Structure: X-ray

Registration Date: 2025-07-14

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 205
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -630425.307882
FMO2-HF: Nuclear repulsion 586875.223221
FMO2-HF: Total energy -43550.084661
FMO2-MP2: Total energy -43675.611135


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(B:124:LYS)


Summations of interaction energy for fragment #1(B:124:LYS)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-0.7222.350.198-0.874-2.3950
Interaction energy analysis for fragmet #1(B:124:LYS)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.146 / q_NPA : 0.029
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
4B125GLU-1-0.949-0.8173.297-3.153-1.3500.112-1.058-0.857-0.006
5B126VAL00.074-0.1013.332-0.0641.643-0.005-0.870-0.8310.005
6B126VAL0-0.0590.1063.3490.178-0.0780.0140.374-0.1320.000
7B127ILE00.094-0.0853.3601.2491.340-0.0020.055-0.1440.000
8B127ILE0-0.0890.0713.1470.7770.3450.0820.654-0.3040.001
9B128ASP0-0.003-0.1574.4911.3491.490-0.002-0.011-0.1280.000
10B128ASP-1-0.883-0.7974.615-4.641-4.623-0.001-0.0180.0010.000
11B129ARG00.127-0.0556.0740.5430.5430.0000.0000.0000.000
12B129ARG10.8381.0497.2222.1442.1440.0000.0000.0000.000
13B130LEU00.012-0.1307.9490.3860.3860.0000.0000.0000.000
14B130LEU0-0.1060.0947.9090.0470.0470.0000.0000.0000.000
15B131ARG00.127-0.0728.5830.2450.2450.0000.0000.0000.000
16B131ARG10.8161.0388.6940.4430.4430.0000.0000.0000.000
17B132TYR00.108-0.0789.9470.2220.2220.0000.0000.0000.000
18B132TYR0-0.0590.11610.650-0.036-0.0360.0000.0000.0000.000
19B133LEU00.181-0.04811.8250.1410.1410.0000.0000.0000.000
20B133LEU0-0.0870.09912.964-0.024-0.0240.0000.0000.0000.000
21B134LYS0-0.012-0.13713.0420.0900.0900.0000.0000.0000.000
22B134LYS10.7000.96813.0160.3480.3480.0000.0000.0000.000
23B135ALA00.114-0.09014.6060.0800.0800.0000.0000.0000.000
24B135ALA0-0.0730.08814.445-0.003-0.0030.0000.0000.0000.000
25B136GLU00.075-0.12115.9590.0620.0620.0000.0000.0000.000
26B136GLU-1-1.011-0.83217.113-0.513-0.5130.0000.0000.0000.000
27B137ILE00.052-0.09318.0860.0390.0390.0000.0000.0000.000
28B137ILE0-0.0890.07517.950-0.001-0.0010.0000.0000.0000.000
29B138GLU00.075-0.09819.9210.0280.0280.0000.0000.0000.000
30B138GLU-1-0.796-0.78318.698-0.330-0.3300.0000.0000.0000.000
31B139ASP00.029-0.10021.4420.0360.0360.0000.0000.0000.000
32B139ASP-1-0.951-0.85122.057-0.244-0.2440.0000.0000.0000.000
33B140LEU00.047-0.12822.4760.0290.0290.0000.0000.0000.000
34B140LEU0-0.0910.10420.851-0.002-0.0020.0000.0000.0000.000
35B141GLU00.096-0.06023.7720.0140.0140.0000.0000.0000.000
36B141GLU-1-1.005-0.87124.140-0.176-0.1760.0000.0000.0000.000
37B142LEU00.081-0.12825.5350.0180.0180.0000.0000.0000.000
38B142LEU0-0.0900.11625.8850.0030.0030.0000.0000.0000.000
39B143LYS00.090-0.10927.0880.0210.0210.0000.0000.0000.000
40B143LYS10.8241.04727.4470.1580.1580.0000.0000.0000.000
41B144GLU00.084-0.13328.4210.0140.0140.0000.0000.0000.000
42B144GLU-1-0.973-0.80628.523-0.191-0.1910.0000.0000.0000.000
43B145ARG00.046-0.10329.9250.0110.0110.0000.0000.0000.000
44B145ARG10.7781.01228.9430.1360.1360.0000.0000.0000.000
45B146GLU00.081-0.12331.6320.0130.0130.0000.0000.0000.000
46B146GLU-1-0.974-0.80732.250-0.137-0.1370.0000.0000.0000.000
47B147LEU00.030-0.15532.8250.0130.0130.0000.0000.0000.000
48B147LEU0-0.0860.12031.800-0.001-0.0010.0000.0000.0000.000
49B148ASP00.093-0.13034.1860.0060.0060.0000.0000.0000.000
50B148ASP-1-1.007-0.81833.655-0.132-0.1320.0000.0000.0000.000
51B149GLN00.032-0.14935.9520.0080.0080.0000.0000.0000.000
52B149GLN0-0.1260.10236.2830.0080.0080.0000.0000.0000.000
53B150GLN00.009-0.14337.4800.0080.0080.0000.0000.0000.000
54B150GLN0-0.0520.10936.059-0.006-0.0060.0000.0000.0000.000
55B151LYS00.122-0.09238.6340.0060.0060.0000.0000.0000.000
56B151LYS10.8991.10838.5800.1020.1020.0000.0000.0000.000
57B152LEU00.043-0.14140.3020.0040.0040.0000.0000.0000.000
58B152LEU0-0.0730.13340.6780.0000.0000.0000.0000.0000.000
59B153TRP00.050-0.11642.1680.0050.0050.0000.0000.0000.000
60B153TRP0-0.0420.12742.2420.0030.0030.0000.0000.0000.000
61B154LEU00.140-0.12443.4320.0040.0040.0000.0000.0000.000
62B154LEU0-0.0670.14042.954-0.001-0.0010.0000.0000.0000.000
63B155GLN00.062-0.10444.4730.0030.0030.0000.0000.0000.000
64B155GLN0-0.0850.08843.760-0.002-0.0020.0000.0000.0000.000
65B156GLN00.068-0.11846.3280.0030.0030.0000.0000.0000.000
66B156GLN0-0.0420.13747.177-0.002-0.0020.0000.0000.0000.000
67B157SER0-0.045-0.11047.8900.0040.0040.0000.0000.0000.000
68B157SER0-0.0230.08647.9740.0000.0000.0000.0000.0000.000
69B158ILE00.113-0.08849.0640.0030.0030.0000.0000.0000.000
70B158ILE0-0.0950.09547.1230.0000.0000.0000.0000.0000.000
71B159LYS00.040-0.09250.6140.0020.0020.0000.0000.0000.000
72B159LYS10.8060.99849.1970.0620.0620.0000.0000.0000.000
73B160ASN00.110-0.04952.4880.0020.0020.0000.0000.0000.000
74B160ASN0-0.0910.06052.9250.0000.0000.0000.0000.0000.000
75B161VAL00.040-0.08853.9210.0030.0030.0000.0000.0000.000
76B161VAL0-0.0710.09853.3620.0000.0000.0000.0000.0000.000
77B162MET00.070-0.08555.2210.0020.0020.0000.0000.0000.000
78B162MET0-0.1030.07352.757-0.001-0.0010.0000.0000.0000.000
79B163ASP00.034-0.08057.0200.0010.0010.0000.0000.0000.000
80B163ASP-1-1.025-0.88857.879-0.044-0.0440.0000.0000.0000.000
81B164ASP00.210-0.04759.0400.0000.0000.0000.0000.0000.000
82B164ASP-1-0.974-0.84259.916-0.042-0.0420.0000.0000.0000.000
83B165SER0-0.018-0.13661.072-0.001-0.0010.0000.0000.0000.000
84B165SER0-0.0360.08865.2830.0010.0010.0000.0000.0000.000
85B166ILE00.066-0.13864.4040.0010.0010.0000.0000.0000.000
86B166ILE0-0.0730.11464.2950.0000.0000.0000.0000.0000.000
87B167ASN00.084-0.10260.7160.0010.0010.0000.0000.0000.000
88B167ASN0-0.1230.07858.8480.0010.0010.0000.0000.0000.000
89B168ASN00.105-0.06462.091-0.001-0.0010.0000.0000.0000.000
90B168ASN0-0.0620.08962.160-0.001-0.0010.0000.0000.0000.000
91B169ARG00.036-0.10062.9030.0000.0000.0000.0000.0000.000
92B169ARG10.8151.05166.7570.0370.0370.0000.0000.0000.000
93B170PHE0-0.009-0.12964.4070.0010.0010.0000.0000.0000.000
94B170PHE0-0.0920.08064.1190.0010.0010.0000.0000.0000.000
95B171SER00.100-0.06061.034-0.001-0.0010.0000.0000.0000.000
96B171SER0-0.0610.06860.0780.0000.0000.0000.0000.0000.000
97B172TYR00.038-0.08461.922-0.001-0.0010.0000.0000.0000.000
98B172TYR0-0.1010.08264.9690.0010.0010.0000.0000.0000.000
99B173VAL00.045-0.12062.4010.0000.0000.0000.0000.0000.000
100B173VAL0-0.0270.12760.3040.0000.0000.0000.0000.0000.000
101B174THR0-0.008-0.08463.6540.0010.0010.0000.0000.0000.000
102B174THR0-0.0840.00366.0760.0010.0010.0000.0000.0000.000
103B175HIS00.118-0.09165.344-0.002-0.0020.0000.0000.0000.000
104B175HIS0-0.0470.09368.9830.0000.0000.0000.0000.0000.000
105B176GLU00.129-0.05566.311-0.001-0.0010.0000.0000.0000.000
106B176GLU-1-0.974-0.86867.392-0.041-0.0410.0000.0000.0000.000
107B177ASP00.056-0.10263.198-0.001-0.0010.0000.0000.0000.000
108B177ASP-1-0.892-0.78462.140-0.048-0.0480.0000.0000.0000.000
109B178ILE00.076-0.09961.595-0.002-0.0020.0000.0000.0000.000
110B178ILE0-0.0780.09560.9690.0000.0000.0000.0000.0000.000
111B179CYS00.090-0.12462.110-0.002-0.0020.0000.0000.0000.000
112B179CYS0-0.1340.09466.1850.0010.0010.0000.0000.0000.000
113B180ASN00.100-0.06662.9960.0000.0000.0000.0000.0000.000
114B180ASN0-0.1150.07262.4610.0010.0010.0000.0000.0000.000
115B181CYS00.011-0.13458.747-0.001-0.0010.0000.0000.0000.000
116B181CYS0-0.1430.08357.677-0.001-0.0010.0000.0000.0000.000
117B182PHE0-0.011-0.12358.237-0.003-0.0030.0000.0000.0000.000
118B182PHE0-0.1090.08356.4930.0000.0000.0000.0000.0000.000
119B183ASN00.196-0.06160.4390.0020.0020.0000.0000.0000.000
120B183ASN0-0.1290.06960.9770.0010.0010.0000.0000.0000.000
121B184GLY0-0.024-0.10062.335-0.001-0.0010.0000.0000.0000.000
122B185ASP00.096-0.01163.5260.0000.0000.0000.0000.0000.000
123B185ASP-1-1.009-0.85461.740-0.051-0.0510.0000.0000.0000.000
124B186THR00.029-0.08264.7350.0010.0010.0000.0000.0000.000
125B186THR0-0.0620.05365.6280.0010.0010.0000.0000.0000.000
126B187LEU00.039-0.11163.044-0.001-0.0010.0000.0000.0000.000
127B187LEU0-0.0410.15061.2830.0000.0000.0000.0000.0000.000
128B188LEU00.142-0.11762.6030.0020.0020.0000.0000.0000.000
129B188LEU0-0.1320.10562.6280.0000.0000.0000.0000.0000.000
130B189ALA00.105-0.10061.809-0.002-0.0020.0000.0000.0000.000
131B189ALA0-0.0870.12163.3000.0000.0000.0000.0000.0000.000
132B190ILE00.071-0.12861.2290.0020.0020.0000.0000.0000.000
133B190ILE0-0.0870.10660.1290.0000.0000.0000.0000.0000.000
134B191GLN00.078-0.10960.538-0.002-0.0020.0000.0000.0000.000
135B191GLN0-0.0600.12062.0920.0010.0010.0000.0000.0000.000
136B192ALA00.057-0.11560.4210.0020.0020.0000.0000.0000.000
137B192ALA0-0.0320.12059.3820.0000.0000.0000.0000.0000.000
138B193PRO00.028-0.06859.777-0.001-0.0010.0000.0000.0000.000
139B194SER00.0500.07056.141-0.001-0.0010.0000.0000.0000.000
140B194SER00.0020.08755.0660.0000.0000.0000.0000.0000.000
141B195GLY0-0.002-0.10253.3790.0010.0010.0000.0000.0000.000
142B196THR00.028-0.00554.4660.0000.0000.0000.0000.0000.000
143B196THR0-0.0930.01556.9770.0010.0010.0000.0000.0000.000
144B197GLN00.089-0.08653.335-0.002-0.0020.0000.0000.0000.000
145B197GLN0-0.0770.11550.1640.0020.0020.0000.0000.0000.000
146B198LEU00.128-0.11652.9560.0030.0030.0000.0000.0000.000
147B198LEU0-0.0910.12052.7980.0000.0000.0000.0000.0000.000
148B199GLU00.075-0.12852.099-0.004-0.0040.0000.0000.0000.000
149B199GLU-1-0.984-0.81151.899-0.056-0.0560.0000.0000.0000.000
150B200VAL00.036-0.14851.7830.0030.0030.0000.0000.0000.000
151B200VAL0-0.0650.13851.7450.0000.0000.0000.0000.0000.000
152B201PRO0-0.025-0.09051.253-0.003-0.0030.0000.0000.0000.000
153B202ILE00.093-0.02550.6470.0000.0000.0000.0000.0000.000
154B202ILE0-0.0470.14348.5390.0000.0000.0000.0000.0000.000
155B203PRO0-0.006-0.10351.3510.0030.0030.0000.0000.0000.000
156B204GLU00.031-0.03354.222-0.001-0.0010.0000.0000.0000.000
157B204GLU-1-1.016-0.85652.554-0.055-0.0550.0000.0000.0000.000
158B205MET00.086-0.12554.9970.0010.0010.0000.0000.0000.000
159B205MET0-0.1090.10857.689-0.001-0.0010.0000.0000.0000.000
160B206GLY0-0.003-0.09558.3320.0000.0000.0000.0000.0000.000
161B207GLN00.0790.02361.1760.0010.0010.0000.0000.0000.000
162B207GLN0-0.1000.06463.676-0.001-0.0010.0000.0000.0000.000
163B208ASN00.093-0.04864.324-0.001-0.0010.0000.0000.0000.000
164B208ASN0-0.0500.05668.3730.0000.0000.0000.0000.0000.000
165B209GLY0-0.014-0.11065.8840.0000.0000.0000.0000.0000.000
166B210GLN00.1610.04462.677-0.001-0.0010.0000.0000.0000.000
167B210GLN0-0.1410.06662.8890.0020.0020.0000.0000.0000.000
168B211LYS00.083-0.11558.6560.0000.0000.0000.0000.0000.000
169B211LYS10.8811.08154.8250.0560.0560.0000.0000.0000.000
170B212LYS00.040-0.06758.1280.0020.0020.0000.0000.0000.000
171B212LYS10.8751.06356.2730.0500.0500.0000.0000.0000.000
172B213TYR00.064-0.10957.221-0.002-0.0020.0000.0000.0000.000
173B213TYR0-0.0440.11655.503-0.001-0.0010.0000.0000.0000.000
174B214GLN00.080-0.08557.3030.0020.0020.0000.0000.0000.000
175B214GLN0-0.0670.08257.5850.0000.0000.0000.0000.0000.000
176B215ILE00.115-0.10456.733-0.002-0.0020.0000.0000.0000.000
177B215ILE0-0.0490.11656.3990.0000.0000.0000.0000.0000.000
178B216ASN00.080-0.08856.6090.0020.0020.0000.0000.0000.000
179B216ASN0-0.1140.07856.398-0.001-0.0010.0000.0000.0000.000
180B217LEU00.084-0.11656.640-0.002-0.0020.0000.0000.0000.000
181B217LEU0-0.0660.13157.1900.0000.0000.0000.0000.0000.000
182B218LYS00.068-0.09957.6790.0020.0020.0000.0000.0000.000
183B218LYS10.7490.98553.9440.0540.0540.0000.0000.0000.000
184B219SER00.113-0.07157.994-0.002-0.0020.0000.0000.0000.000
185B219SER0-0.0470.08160.8700.0000.0000.0000.0000.0000.000
186B220HIS00.034-0.10059.6230.0020.0020.0000.0000.0000.000
187B220HIS0-0.0570.10056.4710.0000.0000.0000.0000.0000.000
188B221SER00.029-0.10660.8150.0020.0020.0000.0000.0000.000
189B221SER0-0.0180.10659.4780.0000.0000.0000.0000.0000.000
190B222GLY0-0.027-0.09862.0450.0010.0010.0000.0000.0000.000
191B223PRO0-0.0210.00064.456-0.001-0.0010.0000.0000.0000.000
192B224ILE00.0860.01164.141-0.001-0.0010.0000.0000.0000.000
193B224ILE0-0.0590.09462.3080.0000.0000.0000.0000.0000.000
194B225HIS00.077-0.09964.9520.0010.0010.0000.0000.0000.000
195B225HIS0-0.0730.10866.2630.0000.0000.0000.0000.0000.000
196B226VAL00.041-0.12165.135-0.002-0.0020.0000.0000.0000.000
197B226VAL0-0.0870.10064.7380.0000.0000.0000.0000.0000.000
198B227LEU00.132-0.09866.0980.0020.0020.0000.0000.0000.000
199B227LEU0-0.1050.10566.6490.0000.0000.0000.0000.0000.000
200B228LEU00.099-0.10766.522-0.002-0.0020.0000.0000.0000.000
201B228LEU0-0.1210.10167.7110.0000.0000.0000.0000.0000.000
202B229ILE0-0.011-0.14766.5490.0020.0020.0000.0000.0000.000
203B229ILE0-0.0460.11664.7660.0000.0000.0000.0000.0000.000
204B230ASN0-0.003-0.07167.9460.0000.0000.0000.0000.0000.000
205B230ASN00.011-0.00371.6640.0000.0000.0000.0000.0000.000