FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 4QR5N

Calculation Name: 4ZWS-E-Xray540

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 4ZWS

Chain ID: E

ChEMBL ID:

UniProt ID: P04537

Base Structure: X-ray

Registration Date: 2025-07-11

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
Remarks
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 189
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -675717.917068
FMO2-HF: Nuclear repulsion 635965.65536
FMO2-HF: Total energy -39752.261708
FMO2-MP2: Total energy -39866.265211


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(E:1:MET)


Summations of interaction energy for fragment #1(E:1:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-1.5330.5540.2380.0060000000000002-2.330.006
Interaction energy analysis for fragmet #1(E:1:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.130 / q_NPA : 0.010
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
4E2ARG10.7621.0204.2770.9571.3160.002-0.161-0.1990.000
5E3LEU00.139-0.1323.786-1.9950.183-0.019-1.228-0.9300.007
6E3LEU0-0.0830.1347.0780.0260.0260.0000.0000.0000.000
7E4GLU00.072-0.1396.2380.3160.3160.0000.0000.0000.000
8E4GLU-1-0.945-0.8088.296-1.818-1.8180.0000.0000.0000.000
9E5ASP00.084-0.1025.6080.3150.3150.0000.0000.0000.000
10E5ASP-1-0.938-0.8074.722-0.085-0.017-0.001-0.007-0.0590.000
11E6LEU00.074-0.0955.9970.6290.6290.0000.0000.0000.000
12E6LEU0-0.0880.0893.865-0.0050.1220.008-0.034-0.1020.000
13E7GLN00.060-0.1227.0360.3490.3490.0000.0000.0000.000
14E7GLN0-0.0800.1049.3800.1020.1020.0000.0000.0000.000
15E8GLU00.183-0.08410.2950.1320.1320.0000.0000.0000.000
16E8GLU-1-1.050-0.86010.875-0.420-0.4200.0000.0000.0000.000
17E9GLU00.019-0.1579.9260.1720.1720.0000.0000.0000.000
18E9GLU-1-0.922-0.8128.197-0.163-0.1630.0000.0000.0000.000
19E10LEU00.115-0.10710.9260.1450.1450.0000.0000.0000.000
20E10LEU0-0.0810.11711.415-0.016-0.0160.0000.0000.0000.000
21E11LYS00.082-0.10812.7120.0770.0770.0000.0000.0000.000
22E11LYS10.8621.08514.9530.3330.3330.0000.0000.0000.000
23E12LYS00.032-0.09714.6040.0360.0360.0000.0000.0000.000
24E12LYS10.8421.04011.6320.1920.1920.0000.0000.0000.000
25E13ASP00.118-0.07114.9310.0510.0510.0000.0000.0000.000
26E13ASP-1-0.957-0.84013.284-0.177-0.1770.0000.0000.0000.000
27E14VAL00.038-0.13916.3030.0450.0450.0000.0000.0000.000
28E14VAL0-0.0690.10516.325-0.004-0.0040.0000.0000.0000.000
29E15PHE00.079-0.08218.6250.0060.0060.0000.0000.0000.000
30E15PHE0-0.0520.11120.6830.0020.0020.0000.0000.0000.000
31E16ILE00.040-0.10521.3000.0120.0120.0000.0000.0000.000
32E16ILE0-0.1000.09823.3950.0020.0020.0000.0000.0000.000
33E17ASP00.183-0.10224.469-0.006-0.0060.0000.0000.0000.000
34E17ASP-1-0.869-0.70825.730-0.032-0.0320.0000.0000.0000.000
35E18SER00.030-0.08126.9000.0070.0070.0000.0000.0000.000
36E18SER0-0.0210.06930.405-0.003-0.0030.0000.0000.0000.000
37E19THR00.021-0.07030.2950.0030.0030.0000.0000.0000.000
38E19THR0-0.1040.00830.1290.0040.0040.0000.0000.0000.000
39E20LYS00.018-0.08029.0320.0070.0070.0000.0000.0000.000
40E20LYS10.7930.99327.8170.0160.0160.0000.0000.0000.000
41E21LEU00.197-0.09228.4290.0030.0030.0000.0000.0000.000
42E21LEU0-0.0740.13528.4230.0010.0010.0000.0000.0000.000
43E22GLN00.093-0.12028.782-0.007-0.0070.0000.0000.0000.000
44E22GLN0-0.0550.12131.6430.0060.0060.0000.0000.0000.000
45E23TYR00.085-0.08927.4020.0020.0020.0000.0000.0000.000
46E23TYR0-0.0840.09221.8820.0080.0080.0000.0000.0000.000
47E24GLU00.052-0.12524.3740.0100.0100.0000.0000.0000.000
48E24GLU-1-0.886-0.77323.423-0.063-0.0630.0000.0000.0000.000
49E25ALA00.140-0.11124.141-0.012-0.0120.0000.0000.0000.000
50E25ALA0-0.0810.12228.0020.0000.0000.0000.0000.0000.000
51E26ALA00.064-0.13425.338-0.009-0.0090.0000.0000.0000.000
52E26ALA0-0.0820.13226.4990.0030.0030.0000.0000.0000.000
53E27ASN00.064-0.10322.2920.0080.0080.0000.0000.0000.000
54E27ASN0-0.0800.09319.4650.0260.0260.0000.0000.0000.000
55E28ASN00.094-0.08120.3370.0030.0030.0000.0000.0000.000
56E28ASN0-0.0520.10521.128-0.014-0.0140.0000.0000.0000.000
57E29VAL00.050-0.13919.747-0.028-0.0280.0000.0000.0000.000
58E29VAL0-0.0440.13021.8910.0010.0010.0000.0000.0000.000
59E30MET00.068-0.11519.191-0.005-0.0050.0000.0000.0000.000
60E30MET0-0.0650.13818.4220.0120.0120.0000.0000.0000.000
61E31LEU00.050-0.14615.7990.0400.0400.0000.0000.0000.000
62E31LEU0-0.0560.13615.475-0.005-0.0050.0000.0000.0000.000
63E32TYR00.136-0.08614.865-0.044-0.0440.0000.0000.0000.000
64E32TYR0-0.1030.09818.090-0.008-0.0080.0000.0000.0000.000
65E33SER00.032-0.07715.446-0.041-0.0410.0000.0000.0000.000
66E33SER0-0.0660.05716.9180.0170.0170.0000.0000.0000.000
67E34LYS00.115-0.08813.0670.0320.0320.0000.0000.0000.000
68E34LYS10.7131.02010.9090.0840.0840.0000.0000.0000.000
69E35TRP00.028-0.14610.4220.0650.0650.0000.0000.0000.000
70E35TRP0-0.0760.1208.133-0.062-0.0620.0000.0000.0000.000
71E36LEU00.131-0.11110.920-0.141-0.1410.0000.0000.0000.000
72E36LEU0-0.0830.13814.6770.0020.0020.0000.0000.0000.000
73E37ASN00.108-0.08811.807-0.040-0.0400.0000.0000.0000.000
74E37ASN0-0.1170.08211.589-0.016-0.0160.0000.0000.0000.000
75E38LYS00.028-0.1057.6260.2750.2750.0000.0000.0000.000
76E38LYS10.8391.0656.1310.0140.0140.0000.0000.0000.000
77E39HIS00.159-0.0757.873-0.094-0.0940.0000.0000.0000.000
78E39HIS0-0.0620.10111.0430.0980.0980.0000.0000.0000.000
79E40SER00.014-0.0959.976-0.058-0.0580.0000.0000.0000.000
80E40SER0-0.0640.06112.4650.0170.0170.0000.0000.0000.000
81E41SER0-0.004-0.1208.876-0.078-0.0780.0000.0000.0000.000
82E41SER0-0.0620.0808.2100.1730.1730.0000.0000.0000.000
83E42ILE00.078-0.1027.4120.4230.4230.0000.0000.0000.000
84E42ILE0-0.0580.1285.155-0.097-0.076-0.001-0.004-0.0160.000
85E43LYS00.096-0.1198.0360.0070.0070.0000.0000.0000.000
86E43LYS10.8551.08612.3030.2310.2310.0000.0000.0000.000
87E44LYS00.107-0.06211.569-0.033-0.0330.0000.0000.0000.000
88E44LYS10.8581.06711.544-0.563-0.5630.0000.0000.0000.000
89E45GLU00.070-0.1288.038-0.020-0.0200.0000.0000.0000.000
90E45GLU-1-0.880-0.7556.3331.1591.1590.0000.0000.0000.000
91E46MET00.044-0.1359.5600.0250.0250.0000.0000.0000.000
92E46MET0-0.0670.1219.384-0.076-0.0760.0000.0000.0000.000
93E47LEU00.129-0.09111.002-0.026-0.0260.0000.0000.0000.000
94E47LEU0-0.1040.11114.5080.0040.0040.0000.0000.0000.000
95E48ARG00.080-0.12012.826-0.047-0.0470.0000.0000.0000.000
96E48ARG10.7220.9989.528-0.657-0.6570.0000.0000.0000.000
97E49ILE00.073-0.10311.8010.0430.0430.0000.0000.0000.000
98E49ILE0-0.0860.1058.385-0.023-0.0230.0000.0000.0000.000
99E50GLU00.086-0.13212.932-0.008-0.0080.0000.0000.0000.000
100E50GLU-1-1.021-0.85715.287-0.181-0.1810.0000.0000.0000.000
101E51ALA00.030-0.13716.013-0.027-0.0270.0000.0000.0000.000
102E51ALA0-0.0790.10716.9400.0080.0080.0000.0000.0000.000
103E52GLN00.105-0.07716.088-0.010-0.0100.0000.0000.0000.000
104E52GLN0-0.1120.08414.2960.0550.0550.0000.0000.0000.000
105E53LYS00.068-0.08716.9270.0080.0080.0000.0000.0000.000
106E53LYS10.7720.99316.5490.1350.1350.0000.0000.0000.000
107E54LYS0-0.118-0.12518.4540.0010.0010.0000.0000.0000.000
108E54LYS10.9541.00619.1590.0400.0400.0000.0000.0000.000
109E94LEU00.2120.05118.5990.0100.0100.0000.0000.0000.000
110E94LEU0-0.1090.08219.4150.0040.0040.0000.0000.0000.000
111E95LYS00.002-0.13615.843-0.051-0.0510.0000.0000.0000.000
112E95LYS10.9391.08014.8790.1950.1950.0000.0000.0000.000
113E96VAL00.070-0.08613.003-0.091-0.0910.0000.0000.0000.000
114E96VAL0-0.0390.12512.8890.0100.0100.0000.0000.0000.000
115E97ASP00.069-0.10812.768-0.054-0.0540.0000.0000.0000.000
116E97ASP-1-0.821-0.80016.474-0.189-0.1890.0000.0000.0000.000
117E98THR0-0.007-0.09613.157-0.043-0.0430.0000.0000.0000.000
118E98THR0-0.0170.09011.9010.0090.0090.0000.0000.0000.000
119E99SER00.081-0.0338.993-0.198-0.1980.0000.0000.0000.000
120E99SER0-0.0640.0558.399-0.057-0.0570.0000.0000.0000.000
121E100LEU00.113-0.0978.660-0.292-0.2920.0000.0000.0000.000
122E100LEU0-0.1000.11411.2070.0190.0190.0000.0000.0000.000
123E101GLN00.068-0.09410.711-0.093-0.0930.0000.0000.0000.000
124E101GLN0-0.1110.07312.8820.0140.0140.0000.0000.0000.000
125E102TYR00.112-0.0948.0140.0340.0340.0000.0000.0000.000
126E102TYR0-0.0760.0964.270-0.246-0.148-0.001-0.025-0.0720.000
127E103TRP00.049-0.1216.286-0.635-0.6350.0000.0000.0000.000
128E103TRP0-0.0370.1123.006-1.867-0.9980.240-0.415-0.693-0.002
129E104GLY00.069-0.0677.224-0.094-0.0940.0000.0000.0000.000
130E105ILE00.1590.01710.0040.1350.1350.0000.0000.0000.000
131E105ILE0-0.1080.1059.203-0.001-0.0010.0000.0000.0000.000
132E106LEU00.042-0.1075.5480.3590.373-0.002-0.001-0.0120.000
133E106LEU0-0.1070.1003.0251.173-0.4740.0121.881-0.2470.001
134E107LEU00.085-0.1066.9050.0750.0750.0000.0000.0000.000
135E107LEU0-0.0930.0959.6120.0500.0500.0000.0000.0000.000
136E108ASP00.069-0.1539.3180.1450.1450.0000.0000.0000.000
137E108ASP-1-0.981-0.81512.080-0.826-0.8260.0000.0000.0000.000
138E109PHE00.102-0.0919.3910.2650.2650.0000.0000.0000.000
139E109PHE0-0.1040.0908.407-0.074-0.0740.0000.0000.0000.000
140E110CYS00.049-0.1299.2600.1590.1590.0000.0000.0000.000
141E110CYS0-0.1490.0857.1920.0390.0390.0000.0000.0000.000
142E111SER0-0.016-0.08110.1210.1740.1740.0000.0000.0000.000
143E111SER0-0.0040.08013.8530.0250.0250.0000.0000.0000.000
144E112GLY00.069-0.05913.4140.0990.0990.0000.0000.0000.000
145E113ALA00.1220.00212.2200.1160.1160.0000.0000.0000.000
146E113ALA0-0.0610.11311.591-0.019-0.0190.0000.0000.0000.000
147E114LEU00.034-0.12713.5990.0860.0860.0000.0000.0000.000
148E114LEU0-0.0900.10913.4600.0150.0150.0000.0000.0000.000
149E115ASP00.115-0.11915.5540.0750.0750.0000.0000.0000.000
150E115ASP-1-1.013-0.83317.756-0.369-0.3690.0000.0000.0000.000
151E116ALA00.097-0.12316.9800.0680.0680.0000.0000.0000.000
152E116ALA0-0.0880.11916.322-0.010-0.0100.0000.0000.0000.000
153E117ILE00.045-0.11717.0950.0400.0400.0000.0000.0000.000
154E117ILE0-0.0920.10315.4930.0060.0060.0000.0000.0000.000
155E118LYS00.104-0.06718.3960.0440.0440.0000.0000.0000.000
156E118LYS10.8791.07020.2570.1620.1620.0000.0000.0000.000
157E119SER00.010-0.11321.0210.0350.0350.0000.0000.0000.000
158E119SER0-0.0570.07221.3510.0050.0050.0000.0000.0000.000
159E120ARG00.076-0.12621.2440.0190.0190.0000.0000.0000.000
160E120ARG10.7041.02719.8770.1250.1250.0000.0000.0000.000
161E121GLY00.005-0.10422.5520.0210.0210.0000.0000.0000.000
162E122PHE00.072-0.01624.5110.0190.0190.0000.0000.0000.000
163E122PHE0-0.0910.09525.1390.0020.0020.0000.0000.0000.000
164E123ALA00.139-0.09426.0370.0140.0140.0000.0000.0000.000
165E123ALA0-0.0710.13625.744-0.003-0.0030.0000.0000.0000.000
166E124ILE00.077-0.09626.7100.0060.0060.0000.0000.0000.000
167E124ILE0-0.1050.10424.4010.0020.0020.0000.0000.0000.000
168E125LYS00.115-0.07028.3200.0100.0100.0000.0000.0000.000
169E125LYS10.7600.99430.2160.0810.0810.0000.0000.0000.000
170E126HIS0-0.024-0.11730.4290.0100.0100.0000.0000.0000.000
171E126HIS0-0.0260.08729.6530.0060.0060.0000.0000.0000.000
172E127ILE00.152-0.06931.0650.0040.0040.0000.0000.0000.000
173E127ILE0-0.1110.08928.6450.0000.0000.0000.0000.0000.000
174E128GLN00.067-0.09332.5740.0040.0040.0000.0000.0000.000
175E128GLN0-0.0700.09633.4400.0000.0000.0000.0000.0000.000
176E129ASP00.144-0.10634.5910.0060.0060.0000.0000.0000.000
177E129ASP-1-0.970-0.82835.706-0.064-0.0640.0000.0000.0000.000
178E130MET00.064-0.10335.9080.0050.0050.0000.0000.0000.000
179E130MET0-0.1220.08533.331-0.002-0.0020.0000.0000.0000.000
180E131ARG00.081-0.06836.8160.0010.0010.0000.0000.0000.000
181E131ARG10.7480.97232.7160.0510.0510.0000.0000.0000.000
182E132ALA00.120-0.07538.4250.0030.0030.0000.0000.0000.000
183E132ALA0-0.1100.09039.7090.0000.0000.0000.0000.0000.000
184E133PHE00.065-0.08440.3740.0050.0050.0000.0000.0000.000
185E133PHE0-0.1180.06040.729-0.001-0.0010.0000.0000.0000.000
186E134GLU00.045-0.12341.3240.0020.0020.0000.0000.0000.000
187E134GLU-1-1.060-0.88040.547-0.056-0.0560.0000.0000.0000.000
188E135ALA0-0.105-0.13543.0010.0020.0020.0000.0000.0000.000
189E135ALA00.0150.02643.6400.0010.0010.0000.0000.0000.000