Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-05-02

All entries: 37386

Number of unique PDB entries: 7781

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FMODB ID: 527GZ

Calculation Name: 4UOS-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 4UOS

Chain ID: A

ChEMBL ID:

UniProt ID:

Base Structure: X-ray

Registration Date: 2023-09-20

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHSide
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 188
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 22 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2050687.337385
FMO2-HF: Nuclear repulsion 1971120.647067
FMO2-HF: Total energy -79566.690318
FMO2-MP2: Total energy -79787.242837


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:0:GLY)


Summations of interaction energy for fragment #1(A:0:GLY)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
5.2758.3840.253-1.425-1.9370.003
Interaction energy analysis for fragmet #1(A:0:GLY)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.065 / q_NPA : 0.028
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A2ASN00.010-0.0123.599-0.0451.6620.000-0.910-0.7960.003
4A3GLU-1-0.816-0.9052.515-1.072-0.1930.253-0.393-0.7400.000
5A4GLU-1-0.838-0.9173.756-3.013-2.4900.000-0.122-0.4010.000
6A5VAL00.0020.0025.8101.1761.1760.0000.0000.0000.000
7A6LYS10.8580.9287.6271.2471.2470.0000.0000.0000.000
8A7LYS10.8660.9176.6381.4771.4770.0000.0000.0000.000
9A8MET00.0380.0129.0970.3750.3750.0000.0000.0000.000
10A9LEU0-0.024-0.00311.8760.2390.2390.0000.0000.0000.000
11A10GLU-1-0.858-0.91211.323-0.654-0.6540.0000.0000.0000.000
12A11LYS10.8640.91312.2330.8240.8240.0000.0000.0000.000
13A12MET0-0.045-0.00215.6100.0640.0640.0000.0000.0000.000
14A13ILE0-0.006-0.00917.4190.0600.0600.0000.0000.0000.000
15A14GLU-1-0.814-0.88818.336-0.241-0.2410.0000.0000.0000.000
16A15GLU-1-0.821-0.89319.847-0.270-0.2700.0000.0000.0000.000
17A16ILE0-0.019-0.02021.6230.0350.0350.0000.0000.0000.000
18A17LYS10.8490.92422.7720.2470.2470.0000.0000.0000.000
19A18LYS10.9130.94523.4230.3050.3050.0000.0000.0000.000
20A19MET0-0.137-0.07325.8330.0180.0180.0000.0000.0000.000
21A20LEU00.0340.02126.8330.0160.0160.0000.0000.0000.000
22A21GLU-1-0.835-0.91427.063-0.175-0.1750.0000.0000.0000.000
23A22LYS10.8460.91827.5090.2160.2160.0000.0000.0000.000
24A23ALA0-0.019-0.00631.9480.0100.0100.0000.0000.0000.000
25A24ILE00.0500.02232.0180.0090.0090.0000.0000.0000.000
26A25LYS10.8630.91734.5960.1150.1150.0000.0000.0000.000
27A26LYS10.9000.93635.5140.1450.1450.0000.0000.0000.000
28A27VAL0-0.002-0.00537.9220.0070.0070.0000.0000.0000.000
29A28LYS10.8650.92839.2470.0870.0870.0000.0000.0000.000
30A29GLU-1-0.818-0.89539.447-0.094-0.0940.0000.0000.0000.000
31A30MET0-0.089-0.04442.2640.0030.0030.0000.0000.0000.000
32A31LEU00.0430.02542.7940.0040.0040.0000.0000.0000.000
33A32GLU-1-0.816-0.89143.837-0.072-0.0720.0000.0000.0000.000
34A33LYS10.9040.95443.8920.0860.0860.0000.0000.0000.000
35A34MET0-0.0160.00048.3740.0020.0020.0000.0000.0000.000
36A35ILE00.009-0.00348.6590.0030.0030.0000.0000.0000.000
37A36LYS10.9510.97851.1190.0600.0600.0000.0000.0000.000
38A37GLU-1-0.888-0.95652.778-0.053-0.0530.0000.0000.0000.000
39A38ILE0-0.019-0.00853.5480.0020.0020.0000.0000.0000.000
40A39LYS10.8490.91955.5790.0460.0460.0000.0000.0000.000
41A40LYS10.9360.97357.1080.0500.0500.0000.0000.0000.000
42A41MET0-0.045-0.01157.2440.0010.0010.0000.0000.0000.000
43A42LEU00.003-0.00259.1370.0010.0010.0000.0000.0000.000
44A43GLU-1-0.888-0.93459.858-0.041-0.0410.0000.0000.0000.000
45A44ASN0-0.106-0.06263.3430.0020.0020.0000.0000.0000.000
46A45GLY00.0160.02365.4200.0010.0010.0000.0000.0000.000
47A46GLU-1-0.814-0.87762.668-0.045-0.0450.0000.0000.0000.000
48A47ASP-1-0.821-0.90265.614-0.041-0.0410.0000.0000.0000.000
49A48SER00.0610.00963.518-0.002-0.0020.0000.0000.0000.000
50A49GLU-1-0.889-0.95162.454-0.044-0.0440.0000.0000.0000.000
51A50LYS10.7860.87661.0260.0440.0440.0000.0000.0000.000
52A51ILE00.008-0.00658.752-0.003-0.0030.0000.0000.0000.000
53A52LEU00.006-0.00857.980-0.003-0.0030.0000.0000.0000.000
54A53LYS10.9430.98457.0730.0520.0520.0000.0000.0000.000
55A54LYS10.8850.94853.3600.0600.0600.0000.0000.0000.000
56A55ALA00.0280.01053.444-0.003-0.0030.0000.0000.0000.000
57A56LYS11.0000.98952.2430.0560.0560.0000.0000.0000.000
58A57GLU-1-0.882-0.91551.790-0.070-0.0700.0000.0000.0000.000
59A58MET00.016-0.00849.181-0.004-0.0040.0000.0000.0000.000
60A59ALA00.0040.00747.680-0.005-0.0050.0000.0000.0000.000
61A60GLU-1-0.822-0.89546.857-0.091-0.0910.0000.0000.0000.000
62A61LYS10.8910.93045.9410.0720.0720.0000.0000.0000.000
63A62ILE0-0.020-0.01142.418-0.005-0.0050.0000.0000.0000.000
64A63LEU00.0200.01341.999-0.006-0.0060.0000.0000.0000.000
65A64LYS10.8590.90641.4780.0870.0870.0000.0000.0000.000
66A65MET00.0450.05538.469-0.009-0.0090.0000.0000.0000.000
67A66VAL0-0.007-0.01537.227-0.008-0.0080.0000.0000.0000.000
68A67ILE00.011-0.00136.587-0.008-0.0080.0000.0000.0000.000
69A68GLU-1-0.840-0.88835.660-0.157-0.1570.0000.0000.0000.000
70A69LEU0-0.024-0.03133.370-0.011-0.0110.0000.0000.0000.000
71A70ALA00.0090.00631.998-0.014-0.0140.0000.0000.0000.000
72A71GLU-1-0.895-0.94931.423-0.167-0.1670.0000.0000.0000.000
73A72LYS10.8050.88929.9370.1560.1560.0000.0000.0000.000
74A73ILE00.011-0.00326.697-0.021-0.0210.0000.0000.0000.000
75A74LEU00.0260.01426.503-0.025-0.0250.0000.0000.0000.000
76A75LYS10.9010.94726.8390.2400.2400.0000.0000.0000.000
77A76LYS10.8810.93821.9350.3390.3390.0000.0000.0000.000
78A77ALA00.0350.01122.257-0.037-0.0370.0000.0000.0000.000
79A78LYS10.9950.98621.8010.2390.2390.0000.0000.0000.000
80A79GLU-1-0.820-0.89221.951-0.362-0.3620.0000.0000.0000.000
81A80MET0-0.061-0.03817.972-0.052-0.0520.0000.0000.0000.000
82A81ALA00.0580.02717.463-0.069-0.0690.0000.0000.0000.000
83A82GLU-1-0.874-0.93917.953-0.526-0.5260.0000.0000.0000.000
84A83LYS10.9170.97015.6220.5030.5030.0000.0000.0000.000
85A84ILE00.0100.00612.876-0.092-0.0920.0000.0000.0000.000
86A85LEU00.0200.01413.592-0.070-0.0700.0000.0000.0000.000
87A86LYS10.8610.91712.8610.8410.8410.0000.0000.0000.000
88A87LYS10.7850.8846.1352.9712.9710.0000.0000.0000.000
89A88VAL00.013-0.00610.725-0.086-0.0860.0000.0000.0000.000
90A89LYS10.8190.92712.1900.5870.5870.0000.0000.0000.000
91A90GLU-1-0.842-0.9189.170-1.320-1.3200.0000.0000.0000.000
92A91LEU0-0.028-0.0267.3480.0280.0280.0000.0000.0000.000
93A92GLY00.0110.01811.4790.0880.0880.0000.0000.0000.000
94A93VAL0-0.013-0.00415.278-0.035-0.0350.0000.0000.0000.000
95A94ASP-1-0.933-0.96518.665-0.249-0.2490.0000.0000.0000.000
96A95ASN00.0510.04114.9720.0580.0580.0000.0000.0000.000
97A96GLU-1-0.701-0.83718.547-0.272-0.2720.0000.0000.0000.000
98A97GLU-1-0.853-0.92119.262-0.233-0.2330.0000.0000.0000.000
99A98VAL00.022-0.00114.818-0.003-0.0030.0000.0000.0000.000
100A99LYS10.8930.94118.0060.2520.2520.0000.0000.0000.000
101A100LYS10.8700.93020.4520.2210.2210.0000.0000.0000.000
102A101MET0-0.045-0.01618.5110.0250.0250.0000.0000.0000.000
103A102LEU00.0290.02016.5140.0090.0090.0000.0000.0000.000
104A103GLU-1-0.881-0.95820.636-0.242-0.2420.0000.0000.0000.000
105A104LYS10.8460.91724.1060.2570.2570.0000.0000.0000.000
106A105MET0-0.045-0.01218.3620.0050.0050.0000.0000.0000.000
107A106ILE0-0.008-0.01422.5620.0130.0130.0000.0000.0000.000
108A107GLU-1-0.828-0.90025.156-0.170-0.1700.0000.0000.0000.000
109A108GLU-1-0.857-0.91626.298-0.170-0.1700.0000.0000.0000.000
110A109ILE0-0.0110.00023.2070.0110.0110.0000.0000.0000.000
111A110LYS10.7980.88127.8440.1850.1850.0000.0000.0000.000
112A111LYS10.9210.96430.6580.1760.1760.0000.0000.0000.000
113A112MET0-0.051-0.02930.6450.0170.0170.0000.0000.0000.000
114A113LEU00.0120.00629.4140.0090.0090.0000.0000.0000.000
115A114GLU-1-0.829-0.91133.281-0.147-0.1470.0000.0000.0000.000
116A115LYS10.9190.96935.8130.1230.1230.0000.0000.0000.000
117A116ALA00.0240.00235.3450.0080.0080.0000.0000.0000.000
118A117ILE00.0200.01736.4310.0070.0070.0000.0000.0000.000
119A118LYS10.9420.97439.3330.1040.1040.0000.0000.0000.000
120A119LYS10.8260.88440.5050.0930.0930.0000.0000.0000.000
121A120VAL00.0350.02239.8520.0050.0050.0000.0000.0000.000
122A121LYS10.9170.95842.6670.0870.0870.0000.0000.0000.000
123A122GLU-1-0.848-0.90545.303-0.078-0.0780.0000.0000.0000.000
124A123MET0-0.006-0.02243.8560.0030.0030.0000.0000.0000.000
125A124LEU00.0300.02644.8890.0040.0040.0000.0000.0000.000
126A125GLU-1-0.848-0.90848.315-0.071-0.0710.0000.0000.0000.000
127A126LYS10.8100.89650.1630.0710.0710.0000.0000.0000.000
128A127MET00.0190.01849.5570.0010.0010.0000.0000.0000.000
129A128ILE00.0050.00652.0200.0020.0020.0000.0000.0000.000
130A129LYS10.9310.96354.3510.0560.0560.0000.0000.0000.000
131A130GLU-1-0.795-0.87454.900-0.046-0.0460.0000.0000.0000.000
132A131ILE00.000-0.00753.6390.0020.0020.0000.0000.0000.000
133A132LYS10.7930.87757.6370.0460.0460.0000.0000.0000.000
134A133LYS10.8750.92859.6060.0460.0460.0000.0000.0000.000
135A134MET0-0.103-0.01758.4190.0000.0000.0000.0000.0000.000
136A135LEU00.0100.01560.3850.0010.0010.0000.0000.0000.000
137A136GLU-1-0.816-0.89163.573-0.042-0.0420.0000.0000.0000.000
138A137ASN0-0.098-0.06763.6960.0010.0010.0000.0000.0000.000
139A138GLY00.0460.03966.6490.0010.0010.0000.0000.0000.000
140A139GLU-1-0.864-0.91961.761-0.040-0.0400.0000.0000.0000.000
141A140ASP-1-0.788-0.89463.256-0.037-0.0370.0000.0000.0000.000
142A141SER00.045-0.00361.002-0.001-0.0010.0000.0000.0000.000
143A142GLU-1-0.856-0.89959.163-0.038-0.0380.0000.0000.0000.000
144A143LYS10.8450.89458.3910.0340.0340.0000.0000.0000.000
145A144ILE00.0230.00557.726-0.002-0.0020.0000.0000.0000.000
146A145LEU0-0.005-0.00855.333-0.003-0.0030.0000.0000.0000.000
147A146LYS10.8980.95353.8650.0420.0420.0000.0000.0000.000
148A147LYS10.8380.90153.0760.0440.0440.0000.0000.0000.000
149A148ALA00.016-0.00252.401-0.003-0.0030.0000.0000.0000.000
150A149LYS10.9850.98248.2440.0520.0520.0000.0000.0000.000
151A150GLU-1-0.845-0.91548.225-0.053-0.0530.0000.0000.0000.000
152A151MET0-0.067-0.03847.848-0.003-0.0030.0000.0000.0000.000
153A152ALA00.0270.01546.249-0.003-0.0030.0000.0000.0000.000
154A153GLU-1-0.877-0.94542.193-0.082-0.0820.0000.0000.0000.000
155A154LYS10.8590.92242.8750.0550.0550.0000.0000.0000.000
156A155ILE0-0.0010.00341.908-0.004-0.0040.0000.0000.0000.000
157A156LEU00.0030.00338.566-0.006-0.0060.0000.0000.0000.000
158A157LYS10.9650.98038.3440.0670.0670.0000.0000.0000.000
159A158MET0-0.0370.00337.981-0.001-0.0010.0000.0000.0000.000
160A159VAL0-0.019-0.01835.034-0.006-0.0060.0000.0000.0000.000
161A160ILE00.0310.01533.578-0.009-0.0090.0000.0000.0000.000
162A161GLU-1-0.787-0.87733.006-0.113-0.1130.0000.0000.0000.000
163A162LEU0-0.028-0.03532.947-0.006-0.0060.0000.0000.0000.000
164A163ALA0-0.0030.00030.122-0.012-0.0120.0000.0000.0000.000
165A164GLU-1-0.884-0.94328.559-0.137-0.1370.0000.0000.0000.000
166A165LYS10.7900.88928.0370.1050.1050.0000.0000.0000.000
167A166ILE0-0.037-0.01225.876-0.011-0.0110.0000.0000.0000.000
168A167LEU00.0080.00623.356-0.020-0.0200.0000.0000.0000.000
169A168LYS10.8750.92823.2410.1280.1280.0000.0000.0000.000
170A169LYS10.9010.93923.7660.1970.1970.0000.0000.0000.000
171A170ALA00.005-0.00121.343-0.016-0.0160.0000.0000.0000.000
172A171LYS10.9380.94718.3610.2030.2030.0000.0000.0000.000
173A172GLU-1-0.844-0.91018.832-0.199-0.1990.0000.0000.0000.000
174A173MET00.0070.01020.0260.0060.0060.0000.0000.0000.000
175A174ALA00.0230.03515.516-0.031-0.0310.0000.0000.0000.000
176A175GLU-1-0.858-0.91115.306-0.315-0.3150.0000.0000.0000.000
177A176LYS10.8190.87815.7510.2650.2650.0000.0000.0000.000
178A177ILE00.0180.00414.1990.0100.0100.0000.0000.0000.000
179A178LEU00.0040.0018.742-0.027-0.0270.0000.0000.0000.000
180A179LYS10.9020.96011.5950.1980.1980.0000.0000.0000.000
181A180LYS10.8380.89713.5350.2800.2800.0000.0000.0000.000
182A181VAL0-0.007-0.0029.0880.0060.0060.0000.0000.0000.000
183A182LYS10.9280.9577.9490.4090.4090.0000.0000.0000.000
184A183GLU-1-0.873-0.92710.249-0.131-0.1310.0000.0000.0000.000
185A184LEU0-0.055-0.01211.5300.0340.0340.0000.0000.0000.000
186A185GLY0-0.0180.0129.6010.0040.0040.0000.0000.0000.000
187A186VAL0-0.003-0.00710.5960.0380.0380.0000.0000.0000.000
188A187GLY00.0040.01111.0470.0560.0560.0000.0000.0000.000