FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-04-23

All entries: 37539

Number of unique PDB entries: 7791

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FMODB ID: 536QZ

Calculation Name: 2QWU-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 2QWU

Chain ID: A

ChEMBL ID:

UniProt ID: Q5NEC5

Base Structure: X-ray

Registration Date: 2023-06-20

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 207
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2219034.768189
FMO2-HF: Nuclear repulsion 2139714.480474
FMO2-HF: Total energy -79320.287715
FMO2-MP2: Total energy -79545.255521


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:3:MET)


Summations of interaction energy for fragment #1(A:3:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-15.186-14.1419.396-5.274-5.166-0.047
Interaction energy analysis for fragmet #1(A:3:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.016 / q_NPA : -0.024
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A5GLU-1-0.849-0.9121.860-15.323-14.6909.398-5.216-4.814-0.047
4A6MET0-0.0110.0045.0820.1020.185-0.001-0.002-0.0790.000
5A7ILE0-0.036-0.0167.7820.4390.4390.0000.0000.0000.000
6A8THR00.0420.0243.970-0.1110.0350.000-0.022-0.1240.000
7A9ARG10.9320.9446.3971.1721.1720.0000.0000.0000.000
8A10GLN00.0620.0267.1880.3520.3520.0000.0000.0000.000
9A11GLN00.0660.0518.432-0.268-0.2680.0000.0000.0000.000
10A12VAL0-0.038-0.01810.6550.1070.1070.0000.0000.0000.000
11A13THR0-0.084-0.04912.1110.0900.0900.0000.0000.0000.000
12A14SER0-0.073-0.06211.7820.0390.0390.0000.0000.0000.000
13A15GLY0-0.0020.01814.4180.0320.0320.0000.0000.0000.000
14A16GLU-1-0.956-0.96410.031-0.291-0.2910.0000.0000.0000.000
15A17THR0-0.018-0.01114.131-0.038-0.0380.0000.0000.0000.000
16A18ILE00.0140.02312.651-0.090-0.0900.0000.0000.0000.000
17A19HIS0-0.009-0.02112.2420.0960.0960.0000.0000.0000.000
18A20VAL00.0700.02911.808-0.186-0.1860.0000.0000.0000.000
19A21ARG10.8730.92013.1720.9130.9130.0000.0000.0000.000
20A22THR00.0070.00113.745-0.133-0.1330.0000.0000.0000.000
21A23ASP-1-0.890-0.93716.211-0.654-0.6540.0000.0000.0000.000
22A24PRO00.001-0.01518.7650.0100.0100.0000.0000.0000.000
23A25THR00.0320.02622.2570.0190.0190.0000.0000.0000.000
24A26ALA00.0070.01718.7630.0120.0120.0000.0000.0000.000
25A27CYS0-0.0170.00320.759-0.009-0.0090.0000.0000.0000.000
26A28ILE00.0140.02523.0210.0280.0280.0000.0000.0000.000
27A29GLY00.0250.00923.974-0.023-0.0230.0000.0000.0000.000
28A30SER00.0100.00023.531-0.009-0.0090.0000.0000.0000.000
29A31HIS0-0.054-0.04018.441-0.034-0.0340.0000.0000.0000.000
30A32PRO00.0230.00415.0880.0110.0110.0000.0000.0000.000
31A33ASN00.0360.03414.200-0.216-0.2160.0000.0000.0000.000
32A34CYS00.0310.00412.3750.1290.1290.0000.0000.0000.000
33A35ARG10.8070.89914.7780.8050.8050.0000.0000.0000.000
34A36MET0-0.0080.00516.914-0.040-0.0400.0000.0000.0000.000
35A37PHE00.000-0.00819.6000.0390.0390.0000.0000.0000.000
36A38ILE0-0.0030.00323.335-0.013-0.0130.0000.0000.0000.000
37A39ASP-1-0.826-0.91326.053-0.279-0.2790.0000.0000.0000.000
38A40SER0-0.022-0.02029.4550.0270.0270.0000.0000.0000.000
39A41LEU00.0670.02528.735-0.018-0.0180.0000.0000.0000.000
40A42THR0-0.048-0.00831.4500.0190.0190.0000.0000.0000.000
41A43ILE00.0520.02131.030-0.008-0.0080.0000.0000.0000.000
42A44ALA00.0380.02834.4790.0100.0100.0000.0000.0000.000
43A45GLY0-0.022-0.02337.2070.0100.0100.0000.0000.0000.000
44A46GLU-1-0.925-0.96337.729-0.142-0.1420.0000.0000.0000.000
45A47LYS10.9240.95936.4520.1540.1540.0000.0000.0000.000
46A48LEU00.004-0.00232.5280.0070.0070.0000.0000.0000.000
47A49ASP-1-0.907-0.94335.388-0.185-0.1850.0000.0000.0000.000
48A50LYS10.9020.95332.0170.2440.2440.0000.0000.0000.000
49A51ASN0-0.013-0.02933.603-0.005-0.0050.0000.0000.0000.000
50A52ILE00.0120.01228.2000.0020.0020.0000.0000.0000.000
51A53VAL00.0340.01230.447-0.007-0.0070.0000.0000.0000.000
52A54ALA0-0.041-0.00925.355-0.011-0.0110.0000.0000.0000.000
53A55ILE00.0260.01723.4580.0160.0160.0000.0000.0000.000
54A56ASP-1-0.802-0.92021.375-0.615-0.6150.0000.0000.0000.000
55A57GLY0-0.002-0.00618.4670.0040.0040.0000.0000.0000.000
56A58GLY0-0.070-0.05019.4510.0220.0220.0000.0000.0000.000
57A59GLU-1-0.938-0.95820.750-0.342-0.3420.0000.0000.0000.000
58A60ASP-1-0.868-0.92624.277-0.296-0.2960.0000.0000.0000.000
59A61VAL00.042-0.00825.8880.0150.0150.0000.0000.0000.000
60A62THR0-0.098-0.04228.4410.0200.0200.0000.0000.0000.000
61A63LYS10.9060.94530.5310.2730.2730.0000.0000.0000.000
62A64ALA0-0.0010.02529.4870.0040.0040.0000.0000.0000.000
63A65ASP-1-0.887-0.94131.566-0.215-0.2150.0000.0000.0000.000
64A66SER0-0.099-0.04334.2920.0050.0050.0000.0000.0000.000
65A67ALA00.0060.00232.876-0.015-0.0150.0000.0000.0000.000
66A68THR0-0.050-0.04128.3470.0080.0080.0000.0000.0000.000
67A69ALA0-0.040-0.02627.425-0.011-0.0110.0000.0000.0000.000
68A70ALA0-0.0140.00629.3870.0160.0160.0000.0000.0000.000
69A71ALA0-0.032-0.01727.4640.0120.0120.0000.0000.0000.000
70A72SER00.008-0.00323.086-0.017-0.0170.0000.0000.0000.000
71A73VAL0-0.002-0.01519.7920.0330.0330.0000.0000.0000.000
72A74ILE0-0.0190.00319.877-0.049-0.0490.0000.0000.0000.000
73A75ARG10.9560.95917.6920.4290.4290.0000.0000.0000.000
74A76MET0-0.0160.00717.2530.0600.0600.0000.0000.0000.000
75A77SER0-0.0240.00216.650-0.095-0.0950.0000.0000.0000.000
76A78ILE00.0200.00717.2420.0620.0620.0000.0000.0000.000
77A79THR00.013-0.00117.585-0.040-0.0400.0000.0000.0000.000
78A80PRO0-0.014-0.00717.6840.0290.0290.0000.0000.0000.000
79A81GLY00.0390.03120.6180.0220.0220.0000.0000.0000.000
80A82SER0-0.063-0.03623.863-0.006-0.0060.0000.0000.0000.000
81A83ILE00.001-0.00226.2150.0020.0020.0000.0000.0000.000
82A84ASN00.0290.01627.549-0.011-0.0110.0000.0000.0000.000
83A85PRO00.0110.02122.8890.0100.0100.0000.0000.0000.000
84A86THR0-0.0090.00922.9390.0220.0220.0000.0000.0000.000
85A87ILE0-0.029-0.02321.979-0.027-0.0270.0000.0000.0000.000
86A88SER0-0.0010.01821.6340.0180.0180.0000.0000.0000.000
87A89ILE0-0.021-0.02321.533-0.044-0.0440.0000.0000.0000.000
88A90THR00.0100.00221.9150.0260.0260.0000.0000.0000.000
89A91LEU0-0.003-0.00922.827-0.040-0.0400.0000.0000.0000.000
90A92GLY00.0410.03525.4640.0200.0200.0000.0000.0000.000
91A93VAL00.0100.00126.931-0.002-0.0020.0000.0000.0000.000
92A94LEU00.0250.02030.4310.0040.0040.0000.0000.0000.000
93A95ILE00.0480.02633.2240.0100.0100.0000.0000.0000.000
94A96LYS11.0071.00236.4700.1440.1440.0000.0000.0000.000
95A97SER00.0500.00239.233-0.004-0.0040.0000.0000.0000.000
96A98ASN0-0.018-0.01840.415-0.003-0.0030.0000.0000.0000.000
97A99VAL00.0540.03437.9050.0040.0040.0000.0000.0000.000
98A100ARG10.9651.00036.2130.1650.1650.0000.0000.0000.000
99A101THR0-0.009-0.00138.050-0.001-0.0010.0000.0000.0000.000
100A102LYS10.8440.91740.9380.1230.1230.0000.0000.0000.000
101A103ILE00.0310.02735.1380.0020.0020.0000.0000.0000.000
102A104GLU-1-0.883-0.95536.522-0.159-0.1590.0000.0000.0000.000
103A105GLU-1-0.865-0.93938.379-0.113-0.1130.0000.0000.0000.000
104A106LYS10.8790.95839.9300.1440.1440.0000.0000.0000.000
105A107VAL00.023-0.00335.0590.0030.0030.0000.0000.0000.000
106A108SER00.0010.00538.2370.0050.0050.0000.0000.0000.000
107A109SER00.006-0.00940.1750.0080.0080.0000.0000.0000.000
108A110ILE0-0.027-0.00839.3910.0040.0040.0000.0000.0000.000
109A111LEU0-0.037-0.01736.0410.0030.0030.0000.0000.0000.000
110A112GLN0-0.067-0.04439.3670.0090.0090.0000.0000.0000.000
111A113ALA0-0.0450.01642.6770.0060.0060.0000.0000.0000.000
112A114SER0-0.001-0.01142.2550.0060.0060.0000.0000.0000.000
113A115ALA00.0280.01437.013-0.006-0.0060.0000.0000.0000.000
114A116THR0-0.023-0.01235.756-0.008-0.0080.0000.0000.0000.000
115A117ASP-1-0.845-0.92036.558-0.125-0.1250.0000.0000.0000.000
116A118MET0-0.111-0.04133.007-0.005-0.0050.0000.0000.0000.000
117A119LYS10.9010.95133.6260.1500.1500.0000.0000.0000.000
118A120ILE00.0090.00728.9120.0010.0010.0000.0000.0000.000
119A121LYS10.8580.92130.2460.2230.2230.0000.0000.0000.000
120A122LEU00.003-0.01024.3780.0000.0000.0000.0000.0000.000
121A123GLY00.0030.01328.3140.0120.0120.0000.0000.0000.000
122A124ASN0-0.050-0.03826.507-0.022-0.0220.0000.0000.0000.000
123A125SER00.0140.01321.611-0.008-0.0080.0000.0000.0000.000
124A126ASN0-0.039-0.01319.5070.0210.0210.0000.0000.0000.000
125A127LYS10.9580.95319.9300.3810.3810.0000.0000.0000.000
126A128LYS10.8880.97217.6230.4610.4610.0000.0000.0000.000
127A129GLN00.0480.03115.353-0.072-0.0720.0000.0000.0000.000
128A130GLU-1-0.779-0.8979.089-2.529-2.5290.0000.0000.0000.000
129A131TYR0-0.018-0.00812.1080.0830.0830.0000.0000.0000.000
130A132LYS10.7560.8758.8781.6131.6130.0000.0000.0000.000
131A133THR00.000-0.0154.1770.3290.401-0.001-0.009-0.0630.000
132A134ASP-1-0.801-0.8617.685-0.798-0.7980.0000.0000.0000.000
133A135GLU-1-0.960-0.97110.929-0.462-0.4620.0000.0000.0000.000
134A136ALA00.0000.00912.7960.1620.1620.0000.0000.0000.000
135A137TRP0-0.013-0.00313.109-0.176-0.1760.0000.0000.0000.000
136A138GLY0-0.010-0.00913.8320.0920.0920.0000.0000.0000.000
137A139ILE0-0.0320.00014.617-0.024-0.0240.0000.0000.0000.000
138A140MET0-0.0090.00311.460-0.184-0.1840.0000.0000.0000.000
139A141ILE00.0610.00313.2320.0220.0220.0000.0000.0000.000
140A142ASP-1-0.922-0.93616.285-0.438-0.4380.0000.0000.0000.000
141A143LEU00.012-0.01519.6840.0370.0370.0000.0000.0000.000
142A144SER0-0.016-0.01522.2200.0400.0400.0000.0000.0000.000
143A145ASN0-0.065-0.02425.2090.0190.0190.0000.0000.0000.000
144A146LEU00.0330.04823.0550.0250.0250.0000.0000.0000.000
145A147GLU-1-0.928-0.97326.931-0.184-0.1840.0000.0000.0000.000
146A148LEU0-0.022-0.00624.7630.0000.0000.0000.0000.0000.000
147A149TYR0-0.024-0.01429.0160.0130.0130.0000.0000.0000.000
148A150PRO00.0090.00730.573-0.008-0.0080.0000.0000.0000.000
149A151ILE00.0070.01827.5650.0100.0100.0000.0000.0000.000
150A152SER0-0.020-0.02932.1010.0140.0140.0000.0000.0000.000
151A153ALA00.0680.02134.414-0.007-0.0070.0000.0000.0000.000
152A154LYS10.9250.95335.4890.0790.0790.0000.0000.0000.000
153A155ALA0-0.024-0.00130.3140.0000.0000.0000.0000.0000.000
154A156PHE0-0.0120.00130.508-0.012-0.0120.0000.0000.0000.000
155A157SER00.0160.01929.8950.0150.0150.0000.0000.0000.000
156A158ILE00.010-0.00230.430-0.016-0.0160.0000.0000.0000.000
157A159SER00.0020.01729.7210.0100.0100.0000.0000.0000.000
158A160ILE00.000-0.00730.820-0.018-0.0180.0000.0000.0000.000
159A161GLU-1-0.945-0.96730.306-0.205-0.2050.0000.0000.0000.000
160A162PRO0-0.069-0.02631.694-0.015-0.0150.0000.0000.0000.000
161A163THR0-0.001-0.00528.796-0.006-0.0060.0000.0000.0000.000
162A164GLU-1-0.842-0.94732.074-0.181-0.1810.0000.0000.0000.000
163A165LEU0-0.030-0.01526.196-0.002-0.0020.0000.0000.0000.000
164A166MET0-0.034-0.01029.360-0.017-0.0170.0000.0000.0000.000
165A167GLY0-0.0040.01231.6650.0110.0110.0000.0000.0000.000
166A168VAL0-0.041-0.02535.063-0.001-0.0010.0000.0000.0000.000
167A169SER0-0.015-0.02537.1580.0040.0040.0000.0000.0000.000
168A170LYS10.9620.95738.6490.1640.1640.0000.0000.0000.000
169A171ASP-1-0.826-0.88240.446-0.166-0.1660.0000.0000.0000.000
170A172GLY0-0.065-0.03041.6610.0040.0040.0000.0000.0000.000
171A173MET0-0.078-0.03336.676-0.001-0.0010.0000.0000.0000.000
172A174ARG10.9330.97034.7370.1720.1720.0000.0000.0000.000
173A175TYR00.0280.01924.592-0.002-0.0020.0000.0000.0000.000
174A176HIS0-0.022-0.02731.3180.0180.0180.0000.0000.0000.000
175A177ILE00.0270.00825.263-0.020-0.0200.0000.0000.0000.000
176A178ILE0-0.013-0.00327.9080.0220.0220.0000.0000.0000.000
177A179SER0-0.021-0.00426.142-0.040-0.0400.0000.0000.0000.000
178A180ILE0-0.005-0.00626.1830.0260.0260.0000.0000.0000.000
179A181ASP-1-0.884-0.95025.035-0.294-0.2940.0000.0000.0000.000
180A182GLY00.0320.00726.5580.0150.0150.0000.0000.0000.000
181A183LEU0-0.030-0.01426.3110.0180.0180.0000.0000.0000.000
182A184THR00.008-0.01526.561-0.003-0.0030.0000.0000.0000.000
183A185THR0-0.013-0.02725.055-0.009-0.0090.0000.0000.0000.000
184A186SER00.0200.00328.2280.0060.0060.0000.0000.0000.000
185A187GLN0-0.047-0.00523.8040.0250.0250.0000.0000.0000.000
186A188GLY00.0720.02025.774-0.006-0.0060.0000.0000.0000.000
187A189SER0-0.037-0.02521.3330.0010.0010.0000.0000.0000.000
188A190LEU00.0510.02819.0580.0120.0120.0000.0000.0000.000
189A191PRO0-0.0020.01618.224-0.021-0.0210.0000.0000.0000.000
190A192VAL00.0330.00812.933-0.025-0.0250.0000.0000.0000.000
191A193CYS0-0.067-0.03610.5170.1800.1800.0000.0000.0000.000
192A194CYS0-0.081-0.0146.7940.0420.0420.0000.0000.0000.000
193A195ALA00.0930.0413.7020.0180.1290.000-0.025-0.0860.000
194A196ALA00.0230.0205.6130.1010.1010.0000.0000.0000.000
195A197SER0-0.055-0.0768.6860.1290.1290.0000.0000.0000.000
196A198THR0-0.011-0.01511.8740.1040.1040.0000.0000.0000.000
197A199ASP-1-0.890-0.9237.654-1.152-1.1520.0000.0000.0000.000
198A200LYS10.9550.95210.9100.4880.4880.0000.0000.0000.000
199A201GLY0-0.019-0.01213.8320.0790.0790.0000.0000.0000.000
200A202VAL0-0.0240.00015.071-0.023-0.0230.0000.0000.0000.000
201A203ALA00.0460.03415.6560.0360.0360.0000.0000.0000.000
202A204LYS10.8770.94417.3210.1750.1750.0000.0000.0000.000
203A205ILE0-0.008-0.02119.353-0.004-0.0040.0000.0000.0000.000
204A206GLY00.0460.02321.7330.0110.0110.0000.0000.0000.000
205A207TYR0-0.026-0.02325.3610.0030.0030.0000.0000.0000.000
206A208ILE0-0.0100.00125.192-0.014-0.0140.0000.0000.0000.000
207A209ALA0-0.0170.00629.5000.0090.0090.0000.0000.0000.000