FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-04-23

All entries: 37539

Number of unique PDB entries: 7791

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FMODB ID: 539YZ

Calculation Name: 4NUX-A-Xray322

Preferred Name: Interleukin-17 receptor A

Target Type: SINGLE PROTEIN

Ligand Name:

ligand 3-letter code:

PDB ID: 4NUX

Chain ID: A

ChEMBL ID: CHEMBL3580485

UniProt ID: Q96F46

Base Structure: X-ray

Registration Date: 2021-09-07

Reference: C. Watanabe, S. Koyama, K. Kamisaka, D. Takaya, T. Honma et. al., Interaction energy analysis of Apo structure dataset on FMODB, To be pubulished.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 1.20200129
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 203
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver.1 Rev. 15 / 20190524
Total energy (hartree)
FMO2-HF: Electronic energy -2449766.207057
FMO2-HF: Nuclear repulsion 2367140.963606
FMO2-HF: Total energy -82625.243452
FMO2-MP2: Total energy -82860.812487


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:376:LYS )


Summations of interaction energy for fragment #1(A:376:LYS )
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-102.217-100.8420.008-0.619-0.7630
Interaction energy analysis for fragmet #1(A:376:LYS )
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.929 / q_NPA : 0.940
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A378ARG 10.9570.9883.50823.07724.4520.008-0.619-0.7630.000
4A379LYS 11.0171.0186.00231.52431.5240.0000.0000.0000.000
5A380VAL 0-0.001-0.0077.4081.3621.3620.0000.0000.0000.000
6A381TRP 00.0250.01011.1290.1310.1310.0000.0000.0000.000
7A382ILE 0-0.018-0.00914.1870.7410.7410.0000.0000.0000.000
8A383ILE 0-0.0170.00617.4280.3350.3350.0000.0000.0000.000
9A384TYR 0-0.054-0.07020.6580.5690.5690.0000.0000.0000.000
10A385SER 00.013-0.00623.8960.0160.0160.0000.0000.0000.000
11A386ALA 00.0540.02227.2590.0730.0730.0000.0000.0000.000
12A387ASP -1-0.758-0.86228.472-9.637-9.6370.0000.0000.0000.000
13A388HIS 00.0900.03931.0410.1410.1410.0000.0000.0000.000
14A389PRO 00.0150.01530.827-0.299-0.2990.0000.0000.0000.000
15A390LEU 0-0.037-0.02929.988-0.277-0.2770.0000.0000.0000.000
16A391TYR 00.0120.02126.415-0.284-0.2840.0000.0000.0000.000
17A392VAL 00.0480.01625.616-0.419-0.4190.0000.0000.0000.000
18A393ASP -1-0.882-0.93825.158-11.340-11.3400.0000.0000.0000.000
19A394VAL 0-0.0060.00525.183-0.353-0.3530.0000.0000.0000.000
20A395VAL 0-0.0020.00521.479-0.489-0.4890.0000.0000.0000.000
21A396LEU 00.0000.00320.179-0.710-0.7100.0000.0000.0000.000
22A397LYS 10.8460.91220.45810.92610.9260.0000.0000.0000.000
23A398PHE 00.0210.01418.422-0.333-0.3330.0000.0000.0000.000
24A399ALA 00.0370.01516.686-0.626-0.6260.0000.0000.0000.000
25A400GLN 0-0.017-0.01315.865-0.475-0.4750.0000.0000.0000.000
26A401PHE 0-0.0060.00516.602-0.271-0.2710.0000.0000.0000.000
27A402LEU 00.0160.00613.696-0.332-0.3320.0000.0000.0000.000
28A403LEU 00.0240.02810.818-0.790-0.7900.0000.0000.0000.000
29A404THR 0-0.061-0.05212.562-0.228-0.2280.0000.0000.0000.000
30A405ALA 0-0.090-0.04315.2290.3320.3320.0000.0000.0000.000
31A406CYS 0-0.055-0.02312.9560.4090.4090.0000.0000.0000.000
32A407GLY 00.0120.0229.698-1.242-1.2420.0000.0000.0000.000
33A408THR 0-0.093-0.0468.091-2.227-2.2270.0000.0000.0000.000
34A409GLU -1-0.916-0.9675.701-35.831-35.8310.0000.0000.0000.000
35A410VAL 0-0.012-0.0239.183-0.232-0.2320.0000.0000.0000.000
36A411ALA 0-0.0100.01112.1250.0580.0580.0000.0000.0000.000
37A412LEU 00.013-0.02413.5700.8650.8650.0000.0000.0000.000
38A413ASP -1-0.762-0.86017.185-13.810-13.8100.0000.0000.0000.000
39A414LEU 00.0150.01020.1500.1920.1920.0000.0000.0000.000
40A415LEU 0-0.093-0.04615.6560.4150.4150.0000.0000.0000.000
41A416GLU -1-0.908-0.95615.031-20.763-20.7630.0000.0000.0000.000
42A417GLU -1-0.822-0.92619.594-12.503-12.5030.0000.0000.0000.000
43A418GLN 0-0.086-0.05421.8760.5260.5260.0000.0000.0000.000
44A419ALA 00.0320.01118.6460.1720.1720.0000.0000.0000.000
45A420ILE 0-0.064-0.04220.5960.2540.2540.0000.0000.0000.000
46A421SER 0-0.043-0.01322.6180.6440.6440.0000.0000.0000.000
47A422GLU -1-0.928-0.93022.815-13.171-13.1710.0000.0000.0000.000
48A423ALA 0-0.069-0.03320.8290.1370.1370.0000.0000.0000.000
49A424GLY 00.0600.02522.8520.3270.3270.0000.0000.0000.000
50A425VAL 00.1140.04722.930-0.624-0.6240.0000.0000.0000.000
51A426MET 0-0.031-0.01823.034-0.379-0.3790.0000.0000.0000.000
52A427THR 0-0.049-0.02219.733-0.323-0.3230.0000.0000.0000.000
53A428TRP 0-0.0100.00317.097-0.532-0.5320.0000.0000.0000.000
54A429VAL 00.0550.03117.880-1.034-1.0340.0000.0000.0000.000
55A430GLY 0-0.034-0.03218.329-0.608-0.6080.0000.0000.0000.000
56A431ARG 10.9480.98313.87118.33918.3390.0000.0000.0000.000
57A432GLN 00.0180.01613.714-2.658-2.6580.0000.0000.0000.000
58A433LYS 10.8470.91613.63014.42314.4230.0000.0000.0000.000
59A434GLN 0-0.037-0.01412.528-0.982-0.9820.0000.0000.0000.000
60A435GLU -1-0.862-0.9329.410-29.451-29.4510.0000.0000.0000.000
61A436MET 0-0.060-0.0099.312-3.365-3.3650.0000.0000.0000.000
62A437VAL 0-0.033-0.02310.904-0.937-0.9370.0000.0000.0000.000
63A438GLU -1-0.971-0.9738.575-30.026-30.0260.0000.0000.0000.000
64A439SER 0-0.082-0.0416.081-2.560-2.5600.0000.0000.0000.000
65A440ASN 0-0.025-0.0097.853-0.046-0.0460.0000.0000.0000.000
66A441SER 0-0.038-0.0167.7800.6810.6810.0000.0000.0000.000
67A442LYS 10.8600.93810.07124.13624.1360.0000.0000.0000.000
68A443ILE 00.006-0.00213.095-0.534-0.5340.0000.0000.0000.000
69A444ILE 0-0.023-0.01215.0540.9310.9310.0000.0000.0000.000
70A445VAL 0-0.007-0.00417.8830.1250.1250.0000.0000.0000.000
71A446LEU 0-0.031-0.02221.0360.4230.4230.0000.0000.0000.000
72A447CYS 0-0.065-0.03423.3900.2570.2570.0000.0000.0000.000
73A448SER 00.024-0.02427.046-0.008-0.0080.0000.0000.0000.000
74A449ARG 10.9340.98630.0968.3428.3420.0000.0000.0000.000
75A450GLY 00.0320.00031.7360.2070.2070.0000.0000.0000.000
76A451THR 00.0020.01526.881-0.026-0.0260.0000.0000.0000.000
77A452ARG 10.8600.94930.2128.7298.7290.0000.0000.0000.000
78A453ALA 0-0.049-0.03233.4130.1630.1630.0000.0000.0000.000
79A454LYS 10.8410.90229.45910.53910.5390.0000.0000.0000.000
80A455TRP 0-0.012-0.00131.032-0.120-0.1200.0000.0000.0000.000
81A456GLN 0-0.001-0.01733.0820.3290.3290.0000.0000.0000.000
82A457ALA 00.0080.02435.7240.1900.1900.0000.0000.0000.000
83A458LEU 0-0.021-0.00330.4720.1140.1140.0000.0000.0000.000
84A459LEU 0-0.096-0.03735.0900.1400.1400.0000.0000.0000.000
85A460GLY 0-0.010-0.00637.5070.2430.2430.0000.0000.0000.000
86A461ARG 10.8670.92739.8048.0618.0610.0000.0000.0000.000
87A462GLY 00.0100.00740.3170.1220.1220.0000.0000.0000.000
88A463ALA 0-0.017-0.00240.468-0.091-0.0910.0000.0000.0000.000
89A464PRO 00.021-0.00338.147-0.194-0.1940.0000.0000.0000.000
90A465VAL 00.0090.01534.7330.1340.1340.0000.0000.0000.000
91A466ARG 10.9230.97136.0607.8447.8440.0000.0000.0000.000
92A467LEU 00.0340.02631.8210.2400.2400.0000.0000.0000.000
93A468ARG 10.8570.92834.3857.6427.6420.0000.0000.0000.000
94A469CYS 0-0.076-0.04230.096-0.063-0.0630.0000.0000.0000.000
95A470ASP -1-0.757-0.85129.512-10.750-10.7500.0000.0000.0000.000
96A471HIS 0-0.036-0.04031.2900.0870.0870.0000.0000.0000.000
97A472GLY 0-0.013-0.01833.1740.3670.3670.0000.0000.0000.000
98A473LYS 10.8160.91030.5639.2569.2560.0000.0000.0000.000
99A474PRO 00.0660.05925.9660.0400.0400.0000.0000.0000.000
100A475VAL 00.0010.01826.3410.4370.4370.0000.0000.0000.000
101A476GLY 0-0.023-0.02228.3370.0010.0010.0000.0000.0000.000
102A477ASP -1-0.788-0.90728.965-10.849-10.8490.0000.0000.0000.000
103A478LEU 00.0750.03222.505-0.152-0.1520.0000.0000.0000.000
104A479PHE 0-0.0320.00724.709-0.352-0.3520.0000.0000.0000.000
105A480THR 00.015-0.01126.140-0.128-0.1280.0000.0000.0000.000
106A481ALA 0-0.015-0.00325.328-0.068-0.0680.0000.0000.0000.000
107A482ALA 00.0460.00421.965-0.328-0.3280.0000.0000.0000.000
108A483MET 0-0.025-0.00723.570-0.422-0.4220.0000.0000.0000.000
109A484ASN 0-0.014-0.01126.1630.2340.2340.0000.0000.0000.000
110A485MET 0-0.0400.00020.491-0.086-0.0860.0000.0000.0000.000
111A486ILE 0-0.003-0.01120.310-0.280-0.2800.0000.0000.0000.000
112A487LEU 00.0330.04222.8790.0800.0800.0000.0000.0000.000
113A488PRO 0-0.060-0.04124.1990.2810.2810.0000.0000.0000.000
114A489ASP -1-0.764-0.87320.464-15.182-15.1820.0000.0000.0000.000
115A490PHE 00.022-0.01222.783-0.073-0.0730.0000.0000.0000.000
116A491LYS 10.9520.97926.57811.11811.1180.0000.0000.0000.000
117A492ARG 10.8660.93023.96212.72312.7230.0000.0000.0000.000
118A493PRO 00.1000.03324.227-0.507-0.5070.0000.0000.0000.000
119A494ALA 0-0.039-0.01821.364-0.278-0.2780.0000.0000.0000.000
120A495CYS 0-0.017-0.00419.830-0.866-0.8660.0000.0000.0000.000
121A496PHE 00.0260.04220.126-0.364-0.3640.0000.0000.0000.000
122A497GLY 00.0320.02118.7770.0020.0020.0000.0000.0000.000
123A498THR 00.0200.01415.178-0.988-0.9880.0000.0000.0000.000
124A499TYR 0-0.035-0.02916.324-0.609-0.6090.0000.0000.0000.000
125A500VAL 0-0.015-0.00816.6740.4930.4930.0000.0000.0000.000
126A501VAL 00.0310.02319.5770.0030.0030.0000.0000.0000.000
127A502CYS 0-0.0050.01721.1570.2350.2350.0000.0000.0000.000
128A503TYR 00.0610.03524.0330.1980.1980.0000.0000.0000.000
129A504PHE 00.0290.00822.6430.0170.0170.0000.0000.0000.000
130A505SER 00.0210.00527.8070.2120.2120.0000.0000.0000.000
131A506GLU -1-0.834-0.88930.704-8.815-8.8150.0000.0000.0000.000
132A507VAL 0-0.030-0.00729.9250.2100.2100.0000.0000.0000.000
133A508SER 0-0.037-0.01330.119-0.058-0.0580.0000.0000.0000.000
134A509CYS 0-0.056-0.02432.2620.1670.1670.0000.0000.0000.000
135A510ASP -1-0.807-0.90431.650-9.576-9.5760.0000.0000.0000.000
136A511GLY 00.0210.00332.615-0.111-0.1110.0000.0000.0000.000
137A512ASP -1-0.837-0.94431.330-8.971-8.9710.0000.0000.0000.000
138A513VAL 0-0.042-0.02628.030-0.302-0.3020.0000.0000.0000.000
139A514PRO 0-0.018-0.00928.3530.2980.2980.0000.0000.0000.000
140A515ASP -1-0.871-0.94030.170-9.455-9.4550.0000.0000.0000.000
141A516LEU 0-0.0070.00526.845-0.023-0.0230.0000.0000.0000.000
142A517PHE 0-0.010-0.01924.152-0.292-0.2920.0000.0000.0000.000
143A518GLY 00.0030.00427.976-0.086-0.0860.0000.0000.0000.000
144A519ALA 0-0.055-0.02629.7340.0540.0540.0000.0000.0000.000
145A520ALA 0-0.0260.00524.605-0.196-0.1960.0000.0000.0000.000
146A521PRO 0-0.026-0.01923.6620.3110.3110.0000.0000.0000.000
147A522ARG 10.9260.96424.9379.5939.5930.0000.0000.0000.000
148A523TYR 00.002-0.02321.589-0.110-0.1100.0000.0000.0000.000
149A524PRO 00.0230.01725.336-0.145-0.1450.0000.0000.0000.000
150A525LEU 0-0.0100.02221.791-0.197-0.1970.0000.0000.0000.000
151A526MET 0-0.002-0.02822.0450.2100.2100.0000.0000.0000.000
152A527ASP -1-0.875-0.92725.466-9.810-9.8100.0000.0000.0000.000
153A528ARG 10.8790.94425.13210.22610.2260.0000.0000.0000.000
154A529PHE 00.000-0.02616.906-0.456-0.4560.0000.0000.0000.000
155A530GLU -1-0.941-0.95920.067-12.432-12.4320.0000.0000.0000.000
156A531GLU -1-0.834-0.93519.806-12.046-12.0460.0000.0000.0000.000
157A532VAL 0-0.029-0.01317.318-0.651-0.6510.0000.0000.0000.000
158A533TYR 0-0.039-0.01913.517-1.376-1.3760.0000.0000.0000.000
159A534PHE 00.0760.02514.975-1.202-1.2020.0000.0000.0000.000
160A535ARG 10.8320.91915.16014.58214.5820.0000.0000.0000.000
161A536ILE 0-0.074-0.03910.989-1.179-1.1790.0000.0000.0000.000
162A537GLN 0-0.047-0.0359.961-3.156-3.1560.0000.0000.0000.000
163A538ASP -1-1.028-0.98211.261-22.722-22.7220.0000.0000.0000.000
164A539LEU 0-0.033-0.02413.0380.0800.0800.0000.0000.0000.000
165A540GLU -1-0.941-0.96715.710-12.110-12.1100.0000.0000.0000.000
166A541NME 0-0.030-0.00918.629-0.425-0.4250.0000.0000.0000.000
167A555ACE 0-0.020-0.01929.6540.0210.0210.0000.0000.0000.000
168A556ASP -1-0.784-0.90728.260-9.457-9.4570.0000.0000.0000.000
169A557ASN 00.018-0.00724.9780.2530.2530.0000.0000.0000.000
170A558TYR 00.0270.02122.533-0.091-0.0910.0000.0000.0000.000
171A559LEU 00.0110.01423.617-0.210-0.2100.0000.0000.0000.000
172A560ARG 10.8550.92724.67710.67010.6700.0000.0000.0000.000
173A561SER 0-0.0130.00819.801-0.263-0.2630.0000.0000.0000.000
174A562PRO 00.0360.00918.4350.4080.4080.0000.0000.0000.000
175A563GLY 00.0620.02719.499-0.505-0.5050.0000.0000.0000.000
176A564GLY 00.0230.01321.4530.0810.0810.0000.0000.0000.000
177A565ARG 10.9480.96023.4579.9679.9670.0000.0000.0000.000
178A566GLN 00.0370.02923.7560.3130.3130.0000.0000.0000.000
179A567LEU 00.0200.02322.1390.1970.1970.0000.0000.0000.000
180A568ARG 10.8620.92425.1519.4449.4440.0000.0000.0000.000
181A569ALA 00.0030.01128.2960.2900.2900.0000.0000.0000.000
182A570ALA 0-0.012-0.01027.2370.2670.2670.0000.0000.0000.000
183A571LEU 0-0.029-0.02026.4960.1640.1640.0000.0000.0000.000
184A572ASP -1-0.798-0.89430.140-8.588-8.5880.0000.0000.0000.000
185A573ARG 10.9390.97232.7339.0139.0130.0000.0000.0000.000
186A574PHE 0-0.031-0.02231.2200.2270.2270.0000.0000.0000.000
187A575ARG 10.9030.93533.8188.4298.4290.0000.0000.0000.000
188A576ASP -1-0.909-0.95935.621-7.628-7.6280.0000.0000.0000.000
189A577TRP 0-0.042-0.02636.9000.3200.3200.0000.0000.0000.000
190A578GLN 0-0.025-0.02234.2420.2860.2860.0000.0000.0000.000
191A579VAL 0-0.0130.00738.9590.1820.1820.0000.0000.0000.000
192A580ARG 10.8810.93441.6347.1497.1490.0000.0000.0000.000
193A581CYS 0-0.102-0.05041.3960.2040.2040.0000.0000.0000.000
194A582PRO 00.0430.02341.322-0.212-0.2120.0000.0000.0000.000
195A583ASP -1-0.884-0.92542.171-6.934-6.9340.0000.0000.0000.000
196A584TRP 0-0.051-0.04533.688-0.196-0.1960.0000.0000.0000.000
197A585PHE 0-0.027-0.01234.179-0.127-0.1270.0000.0000.0000.000
198A586GLU -1-0.832-0.94038.286-7.685-7.6850.0000.0000.0000.000
199A587CYS 0-0.047-0.00741.1830.1270.1270.0000.0000.0000.000
200A588GLU -1-0.909-0.97035.672-8.540-8.5400.0000.0000.0000.000
201A589ASN 0-0.0080.00337.626-0.305-0.3050.0000.0000.0000.000
202A590LEU 0-0.061-0.04338.7230.2630.2630.0000.0000.0000.000
203A591TYR -1-0.918-0.95241.001-7.459-7.4590.0000.0000.0000.000