FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-25

All entries: 37426

Number of unique PDB entries: 7782

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FMODB ID: 594KZ

Calculation Name: 6A84-A-Docking63-cpd15

Preferred Name:

Target Type:

Ligand Name: 2-(4-chloro-1,2-dihydro-1'h-spiro[indole-3,4'-piperidin]-1'-yl)-5,6,7,8-tetrahydroquinazolin-4(3h)-one

ligand 3-letter code: 9SU

PDB ID: 6A84

Chain ID: A

ChEMBL ID:

UniProt ID:

Base Structure: Docking

Registration Date: 2019-08-23

Reference:

DOI: 10.1021/acs.jmedchem.8b01888


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHL
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Manual calculation
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 212
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -2634929.372372
FMO2-HF: Nuclear repulsion 2548819.227213
FMO2-HF: Total energy -86110.145159
FMO2-MP2: Total energy -86358.070352


3D Structure
Snapshot
 
Ligand structure

056

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-119.039-73.35562.424-30.653-77.4620.025


Interactive mode: IFIE and PIEDA for fragment #212(A:1163:056 )


Summations of interaction energy for fragment #212(A:1163:056 )
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-119.039-73.35562.424-30.653-77.462-0.025
Interaction energy analysis for fragmet #212(A:1163:056 )
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.023 / q_NPA : 0.001
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1A952GLY 10.8180.88620.5390.2030.2030.0000.0000.0000.000
2A953THR 00.0680.01016.634-0.012-0.0120.0000.0000.0000.000
3A954ILE 00.0080.02619.740-0.010-0.0100.0000.0000.0000.000
4A955LEU 0-0.005-0.00116.4820.0180.0180.0000.0000.0000.000
5A956ILE 0-0.006-0.00120.444-0.024-0.0240.0000.0000.0000.000
6A957ASP -1-0.851-0.93420.9550.4340.4340.0000.0000.0000.000
7A958LEU 0-0.023-0.00419.026-0.032-0.0320.0000.0000.0000.000
8A959SER 00.0190.01222.4990.0230.0230.0000.0000.0000.000
9A960PRO 00.0640.01723.3370.0220.0220.0000.0000.0000.000
10A961ASP -1-0.905-0.94624.3580.3700.3700.0000.0000.0000.000
11A962ASP -1-0.931-0.95924.1920.4030.4030.0000.0000.0000.000
12A963LYS 10.9720.96624.168-0.328-0.3280.0000.0000.0000.000
13A964GLU -1-0.775-0.83219.9990.5820.5820.0000.0000.0000.000
14A965PHE 0-0.0080.00119.6940.1040.1040.0000.0000.0000.000
15A966GLN 00.000-0.01319.2010.1000.1000.0000.0000.0000.000
16A967SER 0-0.0090.00718.7190.0300.0300.0000.0000.0000.000
17A968VAL 0-0.013-0.00214.0070.1050.1050.0000.0000.0000.000
18A969GLU -1-0.893-0.94814.9871.0981.0980.0000.0000.0000.000
19A970GLU -1-0.881-0.95716.1050.9810.9810.0000.0000.0000.000
20A971GLU -1-0.933-0.94712.6491.2311.2310.0000.0000.0000.000
21A972MET 0-0.093-0.03510.3240.4740.4740.0000.0000.0000.000
22A973GLN 0-0.011-0.03012.3640.2350.2350.0000.0000.0000.000
23A974SER 0-0.0020.01514.9070.0150.0150.0000.0000.0000.000
24A975THR 0-0.0250.00210.2090.1420.1420.0000.0000.0000.000
25A976VAL 0-0.031-0.0119.9930.3970.3970.0000.0000.0000.000
26A977ARG 10.8410.9326.473-1.099-1.0990.0000.0000.0000.000
27A978GLU -1-0.858-0.91611.6740.6880.6880.0000.0000.0000.000
28A979HIS 0-0.051-0.0596.614-0.297-0.2970.0000.0000.0000.000
29A980ARG 10.9080.9169.180-0.088-0.0880.0000.0000.0000.000
30A981ASP -1-0.841-0.91310.2140.6900.6900.0000.0000.0000.000
31A982GLY 00.0200.01012.504-0.007-0.0070.0000.0000.0000.000
32A983GLY 00.0260.01512.6920.0000.0000.0000.0000.0000.000
33A984HIS 0-0.062-0.01512.4780.0440.0440.0000.0000.0000.000
34A985ALA 0-0.031-0.0268.6300.0010.0010.0000.0000.0000.000
35A986GLY 00.030-0.0079.6230.0600.0600.0000.0000.0000.000
36A987GLY 00.0260.01410.4270.0870.0870.0000.0000.0000.000
37A988ILE 0-0.0020.00513.4210.0890.0890.0000.0000.0000.000
38A989PHE 0-0.031-0.01610.1570.0230.0230.0000.0000.0000.000
39A990ASN 00.0620.03314.9800.0620.0620.0000.0000.0000.000
40A991ARG 10.8970.94615.784-0.598-0.5980.0000.0000.0000.000
41A992TYR 0-0.063-0.0679.8490.0960.0960.0000.0000.0000.000
42A993ASN 00.0170.01316.254-0.097-0.0970.0000.0000.0000.000
43A994ILE 00.0120.00114.7140.0900.0900.0000.0000.0000.000
44A995LEU 0-0.048-0.01717.255-0.105-0.1050.0000.0000.0000.000
45A996LYS 10.9280.95717.519-0.512-0.5120.0000.0000.0000.000
46A997ILE 00.0280.03615.6200.1460.1460.0000.0000.0000.000
47A998GLN 0-0.046-0.02316.264-0.072-0.0720.0000.0000.0000.000
48A999LYS 10.9070.94916.266-0.382-0.3820.0000.0000.0000.000
49A1000VAL 00.0110.00714.196-0.114-0.1140.0000.0000.0000.000
50A1001CYS 0-0.0200.01917.432-0.009-0.0090.0000.0000.0000.000
51A1002ASN 00.017-0.03418.417-0.064-0.0640.0000.0000.0000.000
52A1003LYS 10.9380.94820.3860.0700.0700.0000.0000.0000.000
53A1004LYS 10.9700.99019.7210.3900.3900.0000.0000.0000.000
54A1005LEU 0-0.036-0.02215.161-0.028-0.0280.0000.0000.0000.000
55A1006TRP 00.0650.03817.526-0.022-0.0220.0000.0000.0000.000
56A1007GLU -1-0.843-0.90519.963-0.108-0.1080.0000.0000.0000.000
57A1008ARG 10.9400.97115.6000.6770.6770.0000.0000.0000.000
58A1009TYR 0-0.041-0.01914.945-0.013-0.0130.0000.0000.0000.000
59A1010THR 0-0.070-0.04218.3350.0140.0140.0000.0000.0000.000
60A1011HIS 0-0.0080.00721.6910.0340.0340.0000.0000.0000.000
61A1012ARG 10.8900.94717.4810.4290.4290.0000.0000.0000.000
62A1013ARG 10.8850.93918.888-0.106-0.1060.0000.0000.0000.000
63A1014LYS 10.8830.93320.3650.1280.1280.0000.0000.0000.000
64A1015GLU -1-0.840-0.91722.549-0.342-0.3420.0000.0000.0000.000
65A1016VAL 0-0.0060.00117.7080.0080.0080.0000.0000.0000.000
66A1017SER 0-0.029-0.02820.9780.0220.0220.0000.0000.0000.000
67A1018GLU -1-0.889-0.93822.774-0.107-0.1070.0000.0000.0000.000
68A1019GLU -1-0.896-0.90522.372-0.305-0.3050.0000.0000.0000.000
69A1020ASN 0-0.087-0.05819.726-0.020-0.0200.0000.0000.0000.000
70A1021HIS 10.8720.93322.4310.0630.0630.0000.0000.0000.000
71A1022ASN 00.0080.01025.6680.0120.0120.0000.0000.0000.000
72A1023HIS 00.0590.03919.1160.0210.0210.0000.0000.0000.000
73A1024ALA 00.0520.02318.916-0.027-0.0270.0000.0000.0000.000
74A1025ASN 0-0.060-0.02315.2860.0580.0580.0000.0000.0000.000
75A1026GLU -1-0.725-0.84415.0500.2950.2950.0000.0000.0000.000
76A1027ARG 10.8680.93711.132-0.419-0.4190.0000.0000.0000.000
77A1028MET 00.0180.02511.622-0.143-0.1430.0000.0000.0000.000
78A1029LEU 0-0.0040.0016.2320.0100.0100.0000.0000.0000.000
79A1030PHE 00.0260.0185.223-0.104-0.1040.0000.0000.0000.000
80A1031HIS 0-0.025-0.0272.620-6.772-2.6172.005-1.978-4.1820.004
81A1032GLY 00.0390.0141.828-12.068-15.84810.886-3.709-3.3970.042
82A1033SER 00.003-0.0061.953-23.813-20.6397.725-4.764-6.136-0.060
83A1034PRO 00.0460.0332.328-0.2801.3102.382-0.783-3.1890.004
84A1035PHE 0-0.020-0.0162.834-3.484-0.3062.368-1.134-4.4130.011
85A1036VAL 00.0690.0446.189-0.147-0.1470.0000.0000.0000.000
86A1037ASN 00.0460.0128.0100.2340.2340.0000.0000.0000.000
87A1038ALA 0-0.014-0.0108.9330.0960.0960.0000.0000.0000.000
88A1039ILE 00.0270.0255.1890.1650.1650.0000.0000.0000.000
89A1040ILE 00.0430.0349.7140.1890.1890.0000.0000.0000.000
90A1041HIS 0-0.077-0.00212.8750.1500.1500.0000.0000.0000.000
91A1042LYS 10.8110.88912.7960.7420.7420.0000.0000.0000.000
92A1043GLY 00.0140.01912.6110.0250.0250.0000.0000.0000.000
93A1044PHE 00.009-0.0065.825-0.133-0.1330.0000.0000.0000.000
94A1045ASP -1-0.871-0.9468.124-2.076-2.0760.0000.0000.0000.000
95A1046GLU -1-0.868-0.9307.219-2.875-2.8750.0000.0000.0000.000
96A1047ARG 10.9130.9645.7431.3931.3930.0000.0000.0000.000
97A1048HIS 0-0.032-0.0203.426-1.465-0.9040.012-0.077-0.4960.000
98A1049ALA 00.0030.0082.885-5.449-3.2240.459-1.122-1.563-0.011
99A1050TYR 0-0.039-0.0142.100-14.164-6.5206.953-4.133-10.464-0.016
100A1051ILE 00.011-0.0123.0101.4011.2650.1210.932-0.9180.000
101A1052GLY 00.002-0.0035.5630.1680.1680.0000.0000.0000.000
102A1053GLY 0-0.0130.0065.5260.1700.1700.0000.0000.0000.000
103A1054MET 0-0.006-0.0215.7660.1460.1460.0000.0000.0000.000
104A1055PHE 00.0080.0125.3660.2220.2220.0000.0000.0000.000
105A1056GLY 00.0340.0428.6450.0460.0460.0000.0000.0000.000
106A1057ALA 00.0130.0077.102-0.176-0.1760.0000.0000.0000.000
107A1058GLY 00.0730.0306.7000.2250.2250.0000.0000.0000.000
108A1059ILE 0-0.001-0.0044.912-1.364-1.3640.0000.0000.0000.000
109A1060TYR 0-0.016-0.0072.240-2.4540.2865.394-1.981-6.1540.004
110A1061PHE 00.0060.0003.089-0.4971.6980.185-0.669-1.712-0.003
111A1062ALA 00.008-0.0032.207-5.000-3.6312.756-1.150-2.975-0.009
112A1063GLU -1-0.748-0.8523.7211.4411.5190.0190.000-0.0980.000
113A1064ASN 00.0150.0065.842-0.316-0.3160.0000.0000.0000.000
114A1065SER 00.1030.0605.4431.4291.4290.0000.0000.0000.000
115A1066SER 00.0490.0326.4451.1601.1600.0000.0000.0000.000
116A1067LYS 10.8020.8922.354-2.185-1.0762.011-0.513-2.6070.002
117A1068SER 00.0360.0051.974-14.013-12.0766.310-3.561-4.6850.032
118A1069ASN 00.0100.0303.452-2.870-3.2200.0180.752-0.4200.002
119A1070GLN 00.0170.0195.018-1.437-1.4370.0000.0000.0000.000
120A1071TYR 0-0.005-0.0082.164-13.393-3.7998.460-3.388-14.666-0.015
121A1072VAL 0-0.0150.0023.756-3.197-2.2170.009-0.307-0.681-0.002
122A1073TYR 0-0.004-0.0085.985-0.384-0.3840.0000.0000.0000.000
123A1074GLY 00.0050.0042.703-0.4850.1710.308-0.293-0.6710.000
124A1075ILE 0-0.015-0.0052.439-4.475-1.3472.383-1.021-4.4890.013
125A1076GLY 00.0090.0144.188-0.463-0.1840.003-0.054-0.2280.000
126A1077GLY 00.0650.0366.3410.0480.0480.0000.0000.0000.000
127A1078GLY 0-0.035-0.0136.293-0.056-0.0560.0000.0000.0000.000
128A1079THR 0-0.024-0.0266.947-0.075-0.0750.0000.0000.0000.000
129A1080GLY 00.0350.0179.155-0.040-0.0400.0000.0000.0000.000
130A1081CYS 0-0.098-0.0029.962-0.067-0.0670.0000.0000.0000.000
131A1082PRO 00.017-0.00910.466-0.029-0.0290.0000.0000.0000.000
132A1083VAL 0-0.010-0.00612.548-0.028-0.0280.0000.0000.0000.000
133A1084HIS 00.025-0.02715.848-0.032-0.0320.0000.0000.0000.000
134A1085LYS 10.8950.96112.115-0.232-0.2320.0000.0000.0000.000
135A1086ASP -1-0.768-0.89114.3450.5170.5170.0000.0000.0000.000
136A1087ARG 10.8580.92610.605-0.505-0.5050.0000.0000.0000.000
137A1088SER 0-0.004-0.00313.0970.1710.1710.0000.0000.0000.000
138A1089CYS 0-0.0830.03515.388-0.027-0.0270.0000.0000.0000.000
139A1090TYR 00.010-0.02316.7740.0390.0390.0000.0000.0000.000
140A1091ILE 00.002-0.01219.184-0.005-0.0050.0000.0000.0000.000
141A1092CYS 0-0.033-0.03315.518-0.028-0.0280.0000.0000.0000.000
142A1093HIS 00.0420.02716.4180.1120.1120.0000.0000.0000.000
143A1094ARG 10.7950.90510.929-1.389-1.3890.0000.0000.0000.000
144A1095GLN 0-0.012-0.02610.625-0.173-0.1730.0000.0000.0000.000
145A1096LEU 0-0.0310.0025.1470.2520.349-0.001-0.002-0.0950.000
146A1097LEU 0-0.029-0.0166.604-1.152-1.1520.0000.0000.0000.000
147A1098PHE 00.0430.0267.1501.5041.5040.0000.0000.0000.000
148A1099CYS 0-0.069-0.0387.724-0.857-0.8570.0000.0000.0000.000
149A1100ARG 10.8240.89510.341-0.410-0.4100.0000.0000.0000.000
150A1101VAL 0-0.010-0.0048.437-0.213-0.2130.0000.0000.0000.000
151A1102THR 0-0.006-0.01211.8890.0100.0100.0000.0000.0000.000
152A1103LEU 0-0.0070.0009.685-0.134-0.1340.0000.0000.0000.000
153A1104GLY 00.0520.04413.494-0.100-0.1000.0000.0000.0000.000
154A1105LYS 10.9080.97216.5780.2050.2050.0000.0000.0000.000
155A1106SER 0-0.0060.00712.026-0.062-0.0620.0000.0000.0000.000
156A1107PHE 0-0.023-0.01113.8850.0440.0440.0000.0000.0000.000
157A1108LEU 0-0.017-0.00212.852-0.041-0.0410.0000.0000.0000.000
158A1109GLN 00.0160.01011.034-0.017-0.0170.0000.0000.0000.000
159A1110PHE 00.006-0.00111.326-0.026-0.0260.0000.0000.0000.000
160A1111SER 00.0190.0188.803-0.073-0.0730.0000.0000.0000.000
161A1112ALA 00.0330.02711.0960.0450.0450.0000.0000.0000.000
162A1113MET 0-0.023-0.0147.1210.0380.0380.0000.0000.0000.000
163A1114NME 00.0630.0508.4550.0900.0900.0000.0000.0000.000
164A1114ACE 00.018-0.0189.9890.0820.0820.0000.0000.0000.000
165A1115MET 0-0.069-0.0308.382-0.694-0.6940.0000.0000.0000.000
166A1116ALA 0-0.0270.00610.4650.2920.2920.0000.0000.0000.000
167A1117HIS 00.017-0.00212.800-0.018-0.0180.0000.0000.0000.000
168A1118SER 0-0.017-0.00514.242-0.003-0.0030.0000.0000.0000.000
169A1119PRO 00.0180.00814.0530.0310.0310.0000.0000.0000.000
170A1120PRO 00.0750.02417.2950.0220.0220.0000.0000.0000.000
171A1121GLY 0-0.0010.01720.8780.0260.0260.0000.0000.0000.000
172A1122HIS 0-0.091-0.05516.1950.0760.0760.0000.0000.0000.000
173A1123HIS 00.005-0.02715.963-0.029-0.0290.0000.0000.0000.000
174A1124SER 0-0.031-0.03110.726-0.039-0.0390.0000.0000.0000.000
175A1125VAL 00.0030.0119.4360.0580.0580.0000.0000.0000.000
176A1126THR 0-0.012-0.0278.7480.0310.0310.0000.0000.0000.000
177A1127GLY 00.0310.0127.263-0.001-0.0010.0000.0000.0000.000
178A1128ARG 10.9830.9707.643-0.063-0.0630.0000.0000.0000.000
179A1129PRO 0-0.036-0.0257.704-0.035-0.0350.0000.0000.0000.000
180A1130SER 00.005-0.00110.3310.0750.0750.0000.0000.0000.000
181A1131VAL 0-0.0230.00412.9770.0210.0210.0000.0000.0000.000
182A1132ASN 0-0.015-0.02011.3250.0420.0420.0000.0000.0000.000
183A1133GLY 00.0410.02012.8390.0020.0020.0000.0000.0000.000
184A1134LEU 00.0210.00513.6520.0190.0190.0000.0000.0000.000
185A1135ALA 0-0.115-0.0488.4200.1320.1320.0000.0000.0000.000
186A1136LEU 00.0160.0158.048-0.131-0.1310.0000.0000.0000.000
187A1137ALA 0-0.058-0.0236.902-0.209-0.2090.0000.0000.0000.000
188A1138GLU -1-0.900-0.9572.330-6.419-3.4481.659-1.676-2.955-0.023
189A1139TYR 0-0.090-0.0844.104-0.244-0.0850.000-0.015-0.1450.000
190A1140VAL 0-0.0180.0034.755-0.272-0.141-0.001-0.007-0.1230.000
191A1141ILE 00.0120.0097.0970.2530.2530.0000.0000.0000.000
192A1142TYR 00.001-0.0309.674-0.368-0.3680.0000.0000.0000.000
193A1143ARG 10.9690.98811.6390.6380.6380.0000.0000.0000.000
194A1144GLY 00.0620.03610.6730.0390.0390.0000.0000.0000.000
195A1145GLU -1-0.930-0.98611.666-0.710-0.7100.0000.0000.0000.000
196A1146GLN 0-0.051-0.03413.5190.1130.1130.0000.0000.0000.000
197A1147ALA 00.0170.01110.5210.1960.1960.0000.0000.0000.000
198A1148TYR 0-0.037-0.04312.603-0.294-0.2940.0000.0000.0000.000
199A1149PRO 0-0.022-0.01510.4560.2810.2810.0000.0000.0000.000
200A1150GLU -1-0.804-0.88811.9300.4730.4730.0000.0000.0000.000
201A1151TYR 0-0.034-0.05712.625-0.137-0.1370.0000.0000.0000.000
202A1152LEU 0-0.032-0.01611.6180.2760.2760.0000.0000.0000.000
203A1153ILE 00.0270.01210.641-0.160-0.1600.0000.0000.0000.000
204A1154THR 0-0.020-0.01512.0700.0950.0950.0000.0000.0000.000
205A1155TYR 0-0.011-0.0309.2160.1340.1340.0000.0000.0000.000
206A1156GLN 00.0270.01914.819-0.027-0.0270.0000.0000.0000.000
207A1157ILE 0-0.0160.00512.9010.0900.0900.0000.0000.0000.000
208A1158MET 00.004-0.00315.626-0.117-0.1170.0000.0000.0000.000
209A1159ARG 10.9280.95718.592-0.428-0.4280.0000.0000.0000.000
210A1160PRO 0-0.060-0.02819.178-0.010-0.0100.0000.0000.0000.000
211A1161GLU -2-1.779-1.86421.7470.9210.9210.0000.0000.0000.000