FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: 5J8ZZ

Calculation Name: 2UZX-B-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 2UZX

Chain ID: B

ChEMBL ID:

UniProt ID: P0DQD2

Base Structure: X-ray

Registration Date: 2023-09-23

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 560
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -11738342.701654
FMO2-HF: Nuclear repulsion 11509882.748602
FMO2-HF: Total energy -228459.953052
FMO2-MP2: Total energy -229115.358217


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(B:42:GLN)


Summations of interaction energy for fragment #1(B:42:GLN)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
2.9875.861-0.019-1.312-1.5420.003
Interaction energy analysis for fragmet #1(B:42:GLN)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.039 / q_NPA : -0.029
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3B44PRO00.0470.0193.7862.0884.431-0.023-1.245-1.0750.003
4B45ASN0-0.059-0.0304.368-2.335-2.104-0.001-0.008-0.2210.000
5B46PHE00.0990.0607.621-0.056-0.0560.0000.0000.0000.000
6B47THR0-0.022-0.02110.473-0.124-0.1240.0000.0000.0000.000
7B48ALA00.0050.01812.743-0.096-0.0960.0000.0000.0000.000
8B49GLU-1-0.926-0.97216.5500.6910.6910.0000.0000.0000.000
9B50THR0-0.090-0.08319.521-0.051-0.0510.0000.0000.0000.000
10B51PRO0-0.047-0.03518.4590.0740.0740.0000.0000.0000.000
11B52ILE00.0190.02215.546-0.029-0.0290.0000.0000.0000.000
12B53GLN0-0.025-0.02618.881-0.024-0.0240.0000.0000.0000.000
13B54ASN0-0.033-0.01121.574-0.053-0.0530.0000.0000.0000.000
14B55VAL00.0270.01016.8560.0750.0750.0000.0000.0000.000
15B56ILE0-0.0020.01620.233-0.059-0.0590.0000.0000.0000.000
16B57LEU0-0.020-0.01118.6540.0770.0770.0000.0000.0000.000
17B58HIS00.005-0.00521.752-0.053-0.0530.0000.0000.0000.000
18B59GLU-1-0.892-0.94324.3260.3380.3380.0000.0000.0000.000
19B60HIS0-0.047-0.01920.617-0.017-0.0170.0000.0000.0000.000
20B61HIS00.0340.05220.0370.1240.1240.0000.0000.0000.000
21B62ILE0-0.062-0.02916.034-0.027-0.0270.0000.0000.0000.000
22B63PHE00.0350.01219.3580.0220.0220.0000.0000.0000.000
23B64LEU0-0.056-0.03316.0840.0120.0120.0000.0000.0000.000
24B65GLY00.0340.01420.430-0.034-0.0340.0000.0000.0000.000
25B66ALA0-0.010-0.00820.3260.0070.0070.0000.0000.0000.000
26B67THR00.0270.00422.244-0.037-0.0370.0000.0000.0000.000
27B68ASN0-0.0070.02124.4720.0150.0150.0000.0000.0000.000
28B69TYR00.0090.00322.962-0.023-0.0230.0000.0000.0000.000
29B70ILE00.0000.01823.580-0.001-0.0010.0000.0000.0000.000
30B71TYR0-0.006-0.01219.0550.0250.0250.0000.0000.0000.000
31B72VAL00.0610.03620.910-0.016-0.0160.0000.0000.0000.000
32B73LEU0-0.044-0.02013.9170.0430.0430.0000.0000.0000.000
33B74ASN00.0710.03516.372-0.145-0.1450.0000.0000.0000.000
34B75GLU-1-0.805-0.89215.3730.7420.7420.0000.0000.0000.000
35B76GLU-1-0.992-0.98814.2110.8200.8200.0000.0000.0000.000
36B77ASP-1-0.880-0.96611.1331.4411.4410.0000.0000.0000.000
37B78LEU0-0.121-0.0529.6790.4020.4020.0000.0000.0000.000
38B79GLN00.0410.03012.7750.2560.2560.0000.0000.0000.000
39B80LYS10.8420.91614.511-1.051-1.0510.0000.0000.0000.000
40B81VAL0-0.023-0.00917.275-0.029-0.0290.0000.0000.0000.000
41B82ALA00.0260.02220.623-0.062-0.0620.0000.0000.0000.000
42B83GLU-1-0.934-0.98121.9050.7500.7500.0000.0000.0000.000
43B84TYR00.0490.02624.024-0.047-0.0470.0000.0000.0000.000
44B85LYS10.9540.99126.615-0.401-0.4010.0000.0000.0000.000
45B86THR00.0070.00627.979-0.022-0.0220.0000.0000.0000.000
46B87GLY0-0.023-0.02728.925-0.026-0.0260.0000.0000.0000.000
47B88PRO00.0050.00130.028-0.003-0.0030.0000.0000.0000.000
48B89VAL00.0160.02632.044-0.011-0.0110.0000.0000.0000.000
49B90LEU0-0.017-0.02035.286-0.006-0.0060.0000.0000.0000.000
50B91GLU-1-0.822-0.91438.5010.1860.1860.0000.0000.0000.000
51B111VAL0-0.018-0.01639.648-0.004-0.0040.0000.0000.0000.000
52B112TRP0-0.093-0.07135.172-0.003-0.0030.0000.0000.0000.000
53B113LYS10.8800.97334.173-0.209-0.2090.0000.0000.0000.000
54B114ASP-1-0.878-0.94328.6510.3280.3280.0000.0000.0000.000
55B115ASN0-0.025-0.03429.573-0.028-0.0280.0000.0000.0000.000
56B116ILE0-0.041-0.01625.7370.0340.0340.0000.0000.0000.000
57B117ASN00.0260.00624.811-0.018-0.0180.0000.0000.0000.000
58B118MET0-0.032-0.01526.3950.0000.0000.0000.0000.0000.000
59B119ALA0-0.019-0.01327.762-0.019-0.0190.0000.0000.0000.000
60B120LEU0-0.0010.00123.7630.0210.0210.0000.0000.0000.000
61B121VAL00.0150.01427.655-0.013-0.0130.0000.0000.0000.000
62B122VAL00.0140.01127.3090.0030.0030.0000.0000.0000.000
63B123ASP-1-0.930-0.98230.2960.1840.1840.0000.0000.0000.000
64B124THR00.0210.01832.0790.0070.0070.0000.0000.0000.000
65B125TYR0-0.091-0.02234.958-0.014-0.0140.0000.0000.0000.000
66B126TYR0-0.052-0.03538.258-0.008-0.0080.0000.0000.0000.000
67B127ASP-1-0.836-0.93437.8140.1990.1990.0000.0000.0000.000
68B128ASP-1-0.905-0.95532.5370.2550.2550.0000.0000.0000.000
69B129GLN0-0.0010.00432.5810.0060.0060.0000.0000.0000.000
70B130LEU0-0.013-0.01926.8150.0010.0010.0000.0000.0000.000
71B131ILE0-0.023-0.00930.769-0.003-0.0030.0000.0000.0000.000
72B132SER0-0.011-0.00729.1190.0200.0200.0000.0000.0000.000
73B133CYS0-0.020-0.01330.506-0.004-0.0040.0000.0000.0000.000
74B134GLY00.0550.03530.3700.0200.0200.0000.0000.0000.000
75B135SER0-0.007-0.01030.311-0.025-0.0250.0000.0000.0000.000
76B136VAL0-0.031-0.01132.735-0.012-0.0120.0000.0000.0000.000
77B137ASN00.0000.00635.231-0.005-0.0050.0000.0000.0000.000
78B138ARG10.5010.65338.358-0.131-0.1310.0000.0000.0000.000
79B139GLY00.0360.01235.256-0.005-0.0050.0000.0000.0000.000
80B140THR00.0150.01836.2980.0020.0020.0000.0000.0000.000
81B142GLN00.021-0.00632.2190.0110.0110.0000.0000.0000.000
82B143ARG10.9200.97133.729-0.196-0.1960.0000.0000.0000.000
83B144HIS00.0310.02830.6300.0110.0110.0000.0000.0000.000
84B145VAL00.0460.03132.4270.0050.0050.0000.0000.0000.000
85B146PHE0-0.018-0.00928.5230.0180.0180.0000.0000.0000.000
86B147PRO00.0190.01031.560-0.022-0.0220.0000.0000.0000.000
87B148HIS0-0.010-0.00233.8810.0150.0150.0000.0000.0000.000
88B149ASN0-0.028-0.01930.389-0.004-0.0040.0000.0000.0000.000
89B150HIS00.0390.01128.2260.0510.0510.0000.0000.0000.000
90B151THR0-0.003-0.03623.6710.0030.0030.0000.0000.0000.000
91B152ALA00.001-0.01225.0330.0390.0390.0000.0000.0000.000
92B153ASP-1-0.938-0.97126.2040.3860.3860.0000.0000.0000.000
93B154ILE0-0.071-0.01425.683-0.035-0.0350.0000.0000.0000.000
94B155GLN0-0.040-0.05226.0050.0320.0320.0000.0000.0000.000
95B156SER00.0370.03029.8230.0080.0080.0000.0000.0000.000
96B157GLU-1-0.889-0.92932.5010.2240.2240.0000.0000.0000.000
97B158VAL0-0.033-0.01132.215-0.002-0.0020.0000.0000.0000.000
98B159HIS0-0.069-0.03235.359-0.018-0.0180.0000.0000.0000.000
99B160CYS0-0.066-0.06437.1080.0110.0110.0000.0000.0000.000
100B161ILE0-0.0350.01737.832-0.007-0.0070.0000.0000.0000.000
101B162PHE0-0.018-0.02440.9880.0000.0000.0000.0000.0000.000
102B163SER00.0560.08943.683-0.002-0.0020.0000.0000.0000.000
103B164PRO0-0.042-0.05047.4910.0020.0020.0000.0000.0000.000
104B165GLN0-0.079-0.04949.4410.0000.0000.0000.0000.0000.000
105B166ILE0-0.017-0.01452.5810.0000.0000.0000.0000.0000.000
106B167GLU-1-0.925-0.97549.4080.1020.1020.0000.0000.0000.000
107B168GLU-1-0.827-0.92951.7610.0980.0980.0000.0000.0000.000
108B169PRO0-0.0060.02551.017-0.002-0.0020.0000.0000.0000.000
109B170SER0-0.070-0.03052.026-0.002-0.0020.0000.0000.0000.000
110B171GLN0-0.039-0.05948.4100.0020.0020.0000.0000.0000.000
111B172CYS0-0.015-0.02040.3250.0150.0150.0000.0000.0000.000
112B173PRO00.0330.01544.0380.0040.0040.0000.0000.0000.000
113B174ASP-1-0.822-0.92641.8620.1550.1550.0000.0000.0000.000
114B176VAL0-0.023-0.02336.379-0.009-0.0090.0000.0000.0000.000
115B177VAL0-0.020-0.00932.295-0.006-0.0060.0000.0000.0000.000
116B178SER00.0390.02135.2530.0020.0020.0000.0000.0000.000
117B179ALA0-0.011-0.01832.6960.0120.0120.0000.0000.0000.000
118B180LEU0-0.066-0.02332.3220.0040.0040.0000.0000.0000.000
119B181GLY0-0.030-0.01430.445-0.007-0.0070.0000.0000.0000.000
120B182ALA00.008-0.00430.452-0.017-0.0170.0000.0000.0000.000
121B183LYS10.8720.94825.794-0.200-0.2000.0000.0000.0000.000
122B184VAL00.0370.01030.493-0.016-0.0160.0000.0000.0000.000
123B185LEU0-0.0260.00631.1110.0110.0110.0000.0000.0000.000
124B186SER00.029-0.00833.015-0.003-0.0030.0000.0000.0000.000
125B187SER00.0000.00934.4290.0010.0010.0000.0000.0000.000
126B188VAL00.0220.00637.140-0.007-0.0070.0000.0000.0000.000
127B189LYS10.8520.94439.501-0.106-0.1060.0000.0000.0000.000
128B190ASP-1-0.938-0.97142.7070.0880.0880.0000.0000.0000.000
129B191ARG10.9750.97344.839-0.097-0.0970.0000.0000.0000.000
130B192PHE0-0.034-0.00743.7630.0030.0030.0000.0000.0000.000
131B193ILE00.0650.05237.316-0.003-0.0030.0000.0000.0000.000
132B194ASN0-0.040-0.01939.524-0.002-0.0020.0000.0000.0000.000
133B195PHE00.0590.02134.7590.0060.0060.0000.0000.0000.000
134B196PHE0-0.036-0.02136.496-0.013-0.0130.0000.0000.0000.000
135B197VAL00.001-0.00135.1120.0110.0110.0000.0000.0000.000
136B198GLY00.0120.02134.906-0.013-0.0130.0000.0000.0000.000
137B199ASN0-0.037-0.02534.5230.0250.0250.0000.0000.0000.000
138B200THR00.002-0.01133.780-0.015-0.0150.0000.0000.0000.000
139B201ILE0-0.026-0.03336.3100.0090.0090.0000.0000.0000.000
140B202ASN00.0270.03939.240-0.003-0.0030.0000.0000.0000.000
141B203SER0-0.013-0.01341.6870.0000.0000.0000.0000.0000.000
142B204SER00.018-0.03143.1110.0050.0050.0000.0000.0000.000
143B205TYR00.1630.13345.616-0.002-0.0020.0000.0000.0000.000
144B206PHE0-0.1270.09237.9960.0060.0060.0000.0000.0000.000
145B207PRO00.239-0.31344.501-0.005-0.0050.0000.0000.0000.000
146B208ASP-1-0.706-0.74144.7650.1150.1150.0000.0000.0000.000
147B209HIS0-0.0810.01043.5150.0020.0020.0000.0000.0000.000
148B210PRO0-0.2040.15145.6480.0040.0040.0000.0000.0000.000
149B211LEU00.1130.05538.6830.0070.0070.0000.0000.0000.000
150B212HIS00.0020.02241.933-0.001-0.0010.0000.0000.0000.000
151B213SER0-0.039-0.00539.6060.0060.0060.0000.0000.0000.000
152B214ILE0-0.0110.00038.7260.0050.0050.0000.0000.0000.000
153B215SER0-0.0130.00239.746-0.002-0.0020.0000.0000.0000.000
154B216VAL00.010-0.00240.2380.0050.0050.0000.0000.0000.000
155B217ARG10.8960.98639.485-0.146-0.1460.0000.0000.0000.000
156B218ARG10.8920.96441.404-0.096-0.0960.0000.0000.0000.000
157B219LEU00.0160.01639.008-0.001-0.0010.0000.0000.0000.000
158B220LYS10.8880.94742.605-0.133-0.1330.0000.0000.0000.000
159B221GLU-1-0.852-0.93744.0680.1300.1300.0000.0000.0000.000
160B222THR0-0.055-0.03245.3750.0020.0020.0000.0000.0000.000
161B223LYS10.8050.89840.645-0.175-0.1750.0000.0000.0000.000
162B224ASP-1-0.869-0.92941.6050.1550.1550.0000.0000.0000.000
163B225GLY00.0670.01843.3200.0010.0010.0000.0000.0000.000
164B226PHE0-0.089-0.05337.788-0.003-0.0030.0000.0000.0000.000
165B227MET0-0.004-0.00943.901-0.005-0.0050.0000.0000.0000.000
166B228PHE00.0330.02843.4920.0010.0010.0000.0000.0000.000
167B229LEU0-0.030-0.01947.672-0.002-0.0020.0000.0000.0000.000
168B230THR00.006-0.00650.330-0.003-0.0030.0000.0000.0000.000
169B231ASP-1-0.862-0.93650.4240.0670.0670.0000.0000.0000.000
170B232GLN0-0.040-0.02250.0610.0000.0000.0000.0000.0000.000
171B233SER0-0.024-0.01046.5810.0020.0020.0000.0000.0000.000
172B234TYR00.0360.00644.7760.0080.0080.0000.0000.0000.000
173B235ILE0-0.040-0.00643.963-0.007-0.0070.0000.0000.0000.000
174B236ASP-1-0.808-0.92743.6530.0900.0900.0000.0000.0000.000
175B237VAL00.0000.00342.400-0.005-0.0050.0000.0000.0000.000
176B238LEU0-0.0020.00245.5410.0040.0040.0000.0000.0000.000
177B239PRO0-0.013-0.04047.8950.0010.0010.0000.0000.0000.000
178B240GLU-1-0.928-0.96348.6660.0370.0370.0000.0000.0000.000
179B241PHE0-0.066-0.04646.114-0.003-0.0030.0000.0000.0000.000
180B242ARG10.9130.98443.768-0.070-0.0700.0000.0000.0000.000
181B243ASP-1-0.870-0.95641.9240.0710.0710.0000.0000.0000.000
182B244SER0-0.0370.00942.090-0.001-0.0010.0000.0000.0000.000
183B245TYR00.0420.01040.100-0.001-0.0010.0000.0000.0000.000
184B246PRO00.0460.03736.8880.0030.0030.0000.0000.0000.000
185B247ILE0-0.015-0.02435.973-0.008-0.0080.0000.0000.0000.000
186B248LYS10.9430.99230.666-0.087-0.0870.0000.0000.0000.000
187B249TYR00.0510.00732.118-0.011-0.0110.0000.0000.0000.000
188B250VAL0-0.027-0.01126.4850.0180.0180.0000.0000.0000.000
189B251HIS00.019-0.00325.4070.0020.0020.0000.0000.0000.000
190B252ALA00.0210.01428.563-0.016-0.0160.0000.0000.0000.000
191B253PHE0-0.0020.00129.7730.0120.0120.0000.0000.0000.000
192B254GLU-1-0.823-0.92131.6830.1040.1040.0000.0000.0000.000
193B255SER0-0.043-0.03033.445-0.003-0.0030.0000.0000.0000.000
194B256ASN0-0.058-0.04335.465-0.009-0.0090.0000.0000.0000.000
195B257ASN0-0.0060.00438.5600.0010.0010.0000.0000.0000.000
196B258PHE0-0.045-0.00839.112-0.002-0.0020.0000.0000.0000.000
197B259ILE00.0150.00536.1810.0070.0070.0000.0000.0000.000
198B260TYR0-0.043-0.05434.122-0.012-0.0120.0000.0000.0000.000
199B261PHE00.0180.01233.5140.0110.0110.0000.0000.0000.000
200B262LEU0-0.0100.00029.343-0.016-0.0160.0000.0000.0000.000
201B263THR0-0.024-0.02431.9530.0100.0100.0000.0000.0000.000
202B264VAL00.0440.02630.467-0.012-0.0120.0000.0000.0000.000
203B265GLN0-0.025-0.02133.5540.0150.0150.0000.0000.0000.000
204B266ARG10.9340.97837.098-0.045-0.0450.0000.0000.0000.000
205B267GLU-1-0.892-0.95039.817-0.024-0.0240.0000.0000.0000.000
206B268THR0-0.036-0.03741.4120.0010.0010.0000.0000.0000.000
207B269LEU0-0.049-0.03944.4220.0010.0010.0000.0000.0000.000
208B270ASP-1-0.940-0.96946.0480.0040.0040.0000.0000.0000.000
209B271ALA00.0120.03843.609-0.004-0.0040.0000.0000.0000.000
210B272GLN00.0250.00441.9880.0070.0070.0000.0000.0000.000
211B273THR0-0.0150.00738.1770.0000.0000.0000.0000.0000.000
212B274PHE0-0.034-0.02835.2790.0100.0100.0000.0000.0000.000
213B275HIS00.0360.02836.385-0.004-0.0040.0000.0000.0000.000
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