FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 5N6VZ

Calculation Name: 2C45-A-Xray540

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 2C45

Chain ID: A

ChEMBL ID:

UniProt ID: P9WIL3

Base Structure: X-ray

Registration Date: 2025-07-10

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
Remarks
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 215
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -834512.794117
FMO2-HF: Nuclear repulsion 791341.090984
FMO2-HF: Total energy -43171.703132
FMO2-MP2: Total energy -43295.814491


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:MET)


Summations of interaction energy for fragment #1(A:1:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
0.8382.1573.252-1.769-2.8040.012
Interaction energy analysis for fragmet #1(A:1:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.149 / q_NPA : 0.048
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
4A2LEU0-0.0590.1413.991-0.0650.4140.002-0.192-0.2900.000
5A3ARG00.071-0.1283.785-1.4530.351-0.019-1.022-0.7620.005
6A3ARG10.8821.0654.6712.2572.323-0.001-0.013-0.0520.000
7A4THR00.031-0.0686.2710.2350.2350.0000.0000.0000.000
8A4THR0-0.0540.0729.3180.0740.0740.0000.0000.0000.000
9A5MET0-0.020-0.1459.9510.0240.0240.0000.0000.0000.000
10A5MET0-0.0790.1517.618-0.011-0.0110.0000.0000.0000.000
11A6LEU00.222-0.06412.4230.0090.0090.0000.0000.0000.000
12A6LEU0-0.1450.09916.3510.0050.0050.0000.0000.0000.000
13A7LYS00.056-0.10115.9270.0000.0000.0000.0000.0000.000
14A7LYS10.7311.03315.5700.4120.4120.0000.0000.0000.000
15A8SER00.033-0.12416.8280.0420.0420.0000.0000.0000.000
16A8SER00.0170.12320.929-0.010-0.0100.0000.0000.0000.000
17A9LYS00.083-0.08320.591-0.026-0.0260.0000.0000.0000.000
18A9LYS10.7841.04622.2240.3050.3050.0000.0000.0000.000
19A10ILE00.094-0.09923.4480.0110.0110.0000.0000.0000.000
20A10ILE0-0.0380.14226.5460.0010.0010.0000.0000.0000.000
21A11HIS00.061-0.08927.250-0.003-0.0030.0000.0000.0000.000
22A11HIS0-0.1090.04927.254-0.012-0.0120.0000.0000.0000.000
23A12ARG00.054-0.08128.6590.0080.0080.0000.0000.0000.000
24A12ARG10.8561.04630.9900.1870.1870.0000.0000.0000.000
25A13ALA00.223-0.05231.5370.0130.0130.0000.0000.0000.000
26A13ALA0-0.0670.08431.600-0.002-0.0020.0000.0000.0000.000
27A14THR00.025-0.12633.360-0.007-0.0070.0000.0000.0000.000
28A14THR0-0.0170.10037.1580.0040.0040.0000.0000.0000.000
29A15VAL00.072-0.12536.0800.0010.0010.0000.0000.0000.000
30A15VAL0-0.1550.11934.460-0.001-0.0010.0000.0000.0000.000
31A16THR00.113-0.06136.8190.0080.0080.0000.0000.0000.000
32A16THR0-0.1040.05238.522-0.003-0.0030.0000.0000.0000.000
33A17CYS00.051-0.04038.7570.0070.0070.0000.0000.0000.000
34A17CYS0-0.1310.04639.651-0.001-0.0010.0000.0000.0000.000
35A18ALA00.217-0.10638.459-0.008-0.0080.0000.0000.0000.000
36A18ALA0-0.0830.11238.5020.0000.0000.0000.0000.0000.000
37A19ASP0-0.020-0.14738.7950.0060.0060.0000.0000.0000.000
38A19ASP-1-0.946-0.79640.168-0.112-0.1120.0000.0000.0000.000
39A20LEU00.221-0.05738.994-0.008-0.0080.0000.0000.0000.000
40A20LEU0-0.1910.08738.6950.0000.0000.0000.0000.0000.000
41A21HIS00.103-0.08739.278-0.006-0.0060.0000.0000.0000.000
42A21HIS0-0.1400.05942.4940.0020.0020.0000.0000.0000.000
43A22TYR00.129-0.09039.834-0.001-0.0010.0000.0000.0000.000
44A22TYR0-0.0670.12238.6840.0030.0030.0000.0000.0000.000
45A23VAL0-0.018-0.11935.205-0.001-0.0010.0000.0000.0000.000
46A23VAL0-0.0830.09433.211-0.001-0.0010.0000.0000.0000.000
47A24GLY00.104-0.12533.1600.0050.0050.0000.0000.0000.000
48A25SER0-0.0700.06629.928-0.002-0.0020.0000.0000.0000.000
49A25SER0-0.057-0.04729.321-0.010-0.0100.0000.0000.0000.000
50A26VAL00.192-0.05630.0400.0130.0130.0000.0000.0000.000
51A26VAL0-0.0930.09328.821-0.002-0.0020.0000.0000.0000.000
52A27THR00.076-0.04330.591-0.014-0.0140.0000.0000.0000.000
53A27THR0-0.0930.06133.7770.0050.0050.0000.0000.0000.000
54A28ILE00.084-0.09530.9010.0090.0090.0000.0000.0000.000
55A28ILE0-0.0850.09028.172-0.004-0.0040.0000.0000.0000.000
56A29ASP00.170-0.04332.3230.0030.0030.0000.0000.0000.000
57A29ASP-1-0.862-0.80734.197-0.139-0.1390.0000.0000.0000.000
58A30ALA00.160-0.06132.541-0.014-0.0140.0000.0000.0000.000
59A30ALA0-0.0790.08034.2670.0030.0030.0000.0000.0000.000
60A31ASP00.092-0.10431.526-0.012-0.0120.0000.0000.0000.000
61A31ASP-1-0.892-0.80534.071-0.129-0.1290.0000.0000.0000.000
62A32LEU00.010-0.11130.672-0.005-0.0050.0000.0000.0000.000
63A32LEU0-0.0740.08030.348-0.001-0.0010.0000.0000.0000.000
64A33MET00.058-0.10627.728-0.019-0.0190.0000.0000.0000.000
65A33MET0-0.0790.14627.0970.0030.0030.0000.0000.0000.000
66A34ASP00.120-0.08626.650-0.024-0.0240.0000.0000.0000.000
67A34ASP-1-0.912-0.80529.350-0.166-0.1660.0000.0000.0000.000
68A35ALA00.013-0.14226.833-0.011-0.0110.0000.0000.0000.000
69A35ALA0-0.0870.10729.1900.0020.0020.0000.0000.0000.000
70A36ALA00.043-0.12624.985-0.005-0.0050.0000.0000.0000.000
71A36ALA0-0.0770.08124.874-0.001-0.0010.0000.0000.0000.000
72A37ASP00.069-0.08722.859-0.027-0.0270.0000.0000.0000.000
73A37ASP-1-1.052-0.90920.726-0.341-0.3410.0000.0000.0000.000
74A38LEU00.050-0.11222.395-0.047-0.0470.0000.0000.0000.000
75A38LEU0-0.1100.07922.396-0.003-0.0030.0000.0000.0000.000
76A39LEU00.065-0.10123.4930.0260.0260.0000.0000.0000.000
77A39LEU0-0.0580.10821.9340.0010.0010.0000.0000.0000.000
78A40GLU00.100-0.11525.068-0.018-0.0180.0000.0000.0000.000
79A40GLU-1-0.986-0.82828.926-0.159-0.1590.0000.0000.0000.000
80A41GLY0-0.049-0.11925.8380.0060.0060.0000.0000.0000.000
81A42GLU00.066-0.07121.878-0.007-0.0070.0000.0000.0000.000
82A42GLU-1-0.864-0.77319.897-0.417-0.4170.0000.0000.0000.000
83A43GLN00.071-0.08620.3090.0300.0300.0000.0000.0000.000
84A43GLN0-0.1650.06018.606-0.048-0.0480.0000.0000.0000.000
85A44VAL00.031-0.12720.865-0.042-0.0420.0000.0000.0000.000
86A44VAL0-0.0380.14323.0610.0050.0050.0000.0000.0000.000
87A45THR00.005-0.09922.3270.0210.0210.0000.0000.0000.000
88A45THR0-0.0840.05121.067-0.014-0.0140.0000.0000.0000.000
89A46ILE00.098-0.10023.451-0.003-0.0030.0000.0000.0000.000
90A46ILE0-0.0550.12427.2670.0020.0020.0000.0000.0000.000
91A47VAL00.068-0.08526.794-0.003-0.0030.0000.0000.0000.000
92A47VAL0-0.1870.07924.867-0.005-0.0050.0000.0000.0000.000
93A48ASP00.129-0.11527.865-0.002-0.0020.0000.0000.0000.000
94A48ASP-1-0.865-0.77332.190-0.174-0.1740.0000.0000.0000.000
95A49ILE00.024-0.12731.628-0.002-0.0020.0000.0000.0000.000
96A49ILE0-0.1570.05130.589-0.002-0.0020.0000.0000.0000.000
97A50ASP00.071-0.11232.8710.0020.0020.0000.0000.0000.000
98A50ASP-1-0.892-0.78136.632-0.149-0.1490.0000.0000.0000.000
99A51ASN0-0.060-0.11534.6960.0080.0080.0000.0000.0000.000
100A51ASN0-0.0630.07634.234-0.007-0.0070.0000.0000.0000.000
101A52GLY0-0.004-0.11230.897-0.001-0.0010.0000.0000.0000.000
102A53ALA00.1350.00630.269-0.011-0.0110.0000.0000.0000.000
103A53ALA0-0.0510.12331.3550.0010.0010.0000.0000.0000.000
104A54ARG00.019-0.12626.453-0.006-0.0060.0000.0000.0000.000
105A54ARG10.8101.04422.7770.3170.3170.0000.0000.0000.000
106A55LEU00.055-0.13426.7300.0010.0010.0000.0000.0000.000
107A55LEU0-0.0510.15127.8010.0030.0030.0000.0000.0000.000
108A56VAL00.088-0.10823.042-0.013-0.0130.0000.0000.0000.000
109A56VAL0-0.0830.12721.162-0.003-0.0030.0000.0000.0000.000
110A57THR00.003-0.11724.1650.0110.0110.0000.0000.0000.000
111A57THR0-0.0350.10726.9560.0100.0100.0000.0000.0000.000
112A58TYR00.082-0.04124.396-0.030-0.0300.0000.0000.0000.000
113A58TYR0-0.0300.08125.5010.0060.0060.0000.0000.0000.000
114A59ALA00.132-0.11425.7780.0100.0100.0000.0000.0000.000
115A59ALA0-0.0440.14126.092-0.003-0.0030.0000.0000.0000.000
116A60ILE00.045-0.13027.556-0.005-0.0050.0000.0000.0000.000
117A60ILE0-0.0810.14430.8070.0020.0020.0000.0000.0000.000
118A61THR00.007-0.10830.805-0.002-0.0020.0000.0000.0000.000
119A61THR0-0.0330.08430.945-0.004-0.0040.0000.0000.0000.000
120A62GLY00.003-0.08632.3140.0100.0100.0000.0000.0000.000
121A63GLU00.118-0.01735.607-0.003-0.0030.0000.0000.0000.000
122A63GLU-1-1.021-0.85539.895-0.099-0.0990.0000.0000.0000.000
123A64ARG00.086-0.08537.099-0.006-0.0060.0000.0000.0000.000
124A64ARG10.6910.98733.0960.1370.1370.0000.0000.0000.000
125A65GLY0-0.023-0.07737.6000.0080.0080.0000.0000.0000.000
126A66SER0-0.046-0.07439.5160.0030.0030.0000.0000.0000.000
127A66SER0-0.0630.05438.808-0.002-0.0020.0000.0000.0000.000
128A67GLY0-0.029-0.09237.1960.0010.0010.0000.0000.0000.000
129A68VAL00.075-0.01837.492-0.002-0.0020.0000.0000.0000.000
130A68VAL0-0.0590.12436.0810.0010.0010.0000.0000.0000.000
131A69ILE00.049-0.13434.185-0.007-0.0070.0000.0000.0000.000
132A69ILE0-0.1400.15032.905-0.004-0.0040.0000.0000.0000.000
133A70GLY00.009-0.10035.0370.0040.0040.0000.0000.0000.000
134A71ILE00.1460.00833.713-0.010-0.0100.0000.0000.0000.000
135A71ILE0-0.1290.12832.790-0.002-0.0020.0000.0000.0000.000
136A72ASN00.080-0.12834.4060.0090.0090.0000.0000.0000.000
137A72ASN0-0.1570.07834.927-0.005-0.0050.0000.0000.0000.000
138A73GLY00.089-0.07234.461-0.007-0.0070.0000.0000.0000.000
139A74ALA00.0830.01234.045-0.008-0.0080.0000.0000.0000.000
140A74ALA0-0.0850.08433.181-0.002-0.0020.0000.0000.0000.000
141A75ALA00.095-0.13932.2130.0050.0050.0000.0000.0000.000
142A75ALA0-0.0480.09531.298-0.003-0.0030.0000.0000.0000.000
143A76ALA00.165-0.06933.238-0.005-0.0050.0000.0000.0000.000
144A76ALA0-0.0930.10337.7070.0020.0020.0000.0000.0000.000
145A77HIS0-0.041-0.10636.0020.0090.0090.0000.0000.0000.000
146A77HIS0-0.1160.02936.0580.0010.0010.0000.0000.0000.000
147A78LEU00.055-0.09033.416-0.002-0.0020.0000.0000.0000.000
148A78LEU0-0.0960.06031.144-0.002-0.0020.0000.0000.0000.000
149A79VAL00.131-0.06333.5280.0030.0030.0000.0000.0000.000
150A79VAL0-0.0980.07331.386-0.003-0.0030.0000.0000.0000.000
151A80HIS0-0.062-0.10834.7100.0030.0030.0000.0000.0000.000
152A80HIS10.7781.00538.5540.1420.1420.0000.0000.0000.000
153A81PRO00.072-0.06837.628-0.005-0.0050.0000.0000.0000.000
154A82GLY0-0.046-0.01539.8890.0030.0030.0000.0000.0000.000
155A83ASP00.1680.00236.5420.0040.0040.0000.0000.0000.000
156A83ASP-1-0.902-0.81735.760-0.148-0.1480.0000.0000.0000.000
157A84LEU00.067-0.08335.013-0.003-0.0030.0000.0000.0000.000
158A84LEU0-0.1090.07234.467-0.001-0.0010.0000.0000.0000.000
159A85VAL00.093-0.10531.368-0.002-0.0020.0000.0000.0000.000
160A85VAL0-0.0600.12730.452-0.003-0.0030.0000.0000.0000.000
161A86ILE00.082-0.15627.4370.0080.0080.0000.0000.0000.000
162A86ILE0-0.1470.07325.661-0.003-0.0030.0000.0000.0000.000
163A87LEU00.081-0.10226.007-0.009-0.0090.0000.0000.0000.000
164A87LEU0-0.0520.12826.2140.0000.0000.0000.0000.0000.000
165A88ILE00.044-0.09421.7100.0080.0080.0000.0000.0000.000
166A88ILE0-0.1120.05919.697-0.004-0.0040.0000.0000.0000.000
167A89ALA00.173-0.09419.7310.0000.0000.0000.0000.0000.000
168A89ALA0-0.0170.17020.0590.0070.0070.0000.0000.0000.000
169A90TYR00.019-0.07215.3640.0190.0190.0000.0000.0000.000
170A90TYR0-0.1220.02314.316-0.012-0.0120.0000.0000.0000.000
171A91ALA00.189-0.11413.3730.0810.0810.0000.0000.0000.000
172A91ALA0-0.0350.16813.3470.0160.0160.0000.0000.0000.000
173A92THR00.009-0.0849.383-0.127-0.1270.0000.0000.0000.000
174A92THR0-0.0340.0558.4240.0290.0290.0000.0000.0000.000
175A93MET00.002-0.1187.8210.3240.3240.0000.0000.0000.000
176A93MET0-0.0760.1118.3620.0680.0680.0000.0000.0000.000
177A94ASP00.195-0.0604.403-1.281-1.299-0.002-0.0190.0390.000
178A94ASP-1-1.006-0.8703.665-1.692-1.3400.004-0.157-0.200-0.001
179A95ASP00.076-0.1142.8192.4020.9730.0561.699-0.3260.000
180A95ASP-1-0.937-0.8421.921-1.024-1.2303.208-1.967-1.0350.008
181A96ALA00.107-0.1103.8350.5090.7800.004-0.098-0.1780.000
182A96ALA0-0.0980.1196.8770.0530.0530.0000.0000.0000.000
183A97ARG00.007-0.1036.9180.1720.1720.0000.0000.0000.000
184A97ARG10.8721.0457.8040.5130.5130.0000.0000.0000.000
185A98ALA00.124-0.0757.3130.2850.2850.0000.0000.0000.000
186A98ALA0-0.0970.0456.549-0.123-0.1230.0000.0000.0000.000
187A99ARG00.029-0.0598.4370.0660.0660.0000.0000.0000.000
188A99ARG10.7941.0016.683-0.076-0.0760.0000.0000.0000.000
189A100THR00.055-0.06210.2480.0270.0270.0000.0000.0000.000
190A100THR0-0.0830.04512.8020.0430.0430.0000.0000.0000.000
191A101TYR00.097-0.14513.1060.0160.0160.0000.0000.0000.000
192A101TYR0-0.0150.16012.726-0.019-0.0190.0000.0000.0000.000
193A102GLN00.005-0.08914.707-0.018-0.0180.0000.0000.0000.000
194A102GLN0-0.0820.08418.8730.0140.0140.0000.0000.0000.000
195A103PRO00.019-0.09316.4520.0140.0140.0000.0000.0000.000
196A104ARG00.096-0.00118.7160.0370.0370.0000.0000.0000.000
197A104ARG10.8381.08521.6180.2410.2410.0000.0000.0000.000
198A105ILE00.082-0.10421.992-0.011-0.0110.0000.0000.0000.000
199A105ILE0-0.1390.07221.470-0.001-0.0010.0000.0000.0000.000
200A106VAL00.022-0.13524.1430.0160.0160.0000.0000.0000.000
201A106VAL0-0.0350.14526.2460.0010.0010.0000.0000.0000.000
202A107PHE00.118-0.09127.736-0.008-0.0080.0000.0000.0000.000
203A107PHE0-0.1030.06927.298-0.001-0.0010.0000.0000.0000.000
204A108VAL0-0.074-0.14330.4450.0040.0040.0000.0000.0000.000
205A108VAL0-0.0750.15132.0910.0000.0000.0000.0000.0000.000
206A109ASP00.177-0.06533.492-0.001-0.0010.0000.0000.0000.000
207A109ASP-1-0.928-0.84737.641-0.115-0.1150.0000.0000.0000.000
208A110ALA00.131-0.06037.197-0.008-0.0080.0000.0000.0000.000
209A110ALA0-0.0710.11640.4900.0010.0010.0000.0000.0000.000
210A111TYR0-0.023-0.13339.5100.0000.0000.0000.0000.0000.000
211A111TYR0-0.0940.06840.9170.0030.0030.0000.0000.0000.000
212A112ASN00.037-0.15535.8220.0020.0020.0000.0000.0000.000
213A112ASN0-0.1150.08135.524-0.007-0.0070.0000.0000.0000.000
214A113LYS0-0.009-0.08834.000-0.002-0.0020.0000.0000.0000.000
215A113LYS10.9980.99237.5010.1080.1080.0000.0000.0000.000