FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: 5NJLZ

Calculation Name: 3E7Q-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 3E7Q

Chain ID: A

ChEMBL ID:

UniProt ID: Q9HUI1

Base Structure: X-ray

Registration Date: 2023-09-27

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 208
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2156255.051956
FMO2-HF: Nuclear repulsion 2077766.016599
FMO2-HF: Total energy -78489.035357
FMO2-MP2: Total energy -78721.279078


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:2:ASN)


Summations of interaction energy for fragment #1(A:2:ASN)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-24.886-22.2968.279-4.172-6.6980.033
Interaction energy analysis for fragmet #1(A:2:ASN)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.059 / q_NPA : 0.011
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A4GLU-1-0.908-0.9543.173-5.652-3.2340.000-1.006-1.413-0.001
4A5VAL00.0240.0032.4560.0260.5640.971-0.514-0.995-0.001
5A6ARG10.8720.9441.990-22.964-23.3307.308-2.652-4.2900.035
6A7PHE00.0590.0225.8060.1380.1380.0000.0000.0000.000
7A8SER0-0.054-0.0437.866-0.180-0.1800.0000.0000.0000.000
8A9ARG10.9250.9557.1732.2622.2620.0000.0000.0000.000
9A10LEU0-0.0010.0329.8720.0790.0790.0000.0000.0000.000
10A11GLU-1-0.818-0.91212.157-0.160-0.1600.0000.0000.0000.000
11A12PRO0-0.040-0.01815.9260.1010.1010.0000.0000.0000.000
12A13GLU-1-0.895-0.95517.9280.2260.2260.0000.0000.0000.000
13A14GLN00.0270.01514.045-0.017-0.0170.0000.0000.0000.000
14A15ARG10.8520.92312.8260.0710.0710.0000.0000.0000.000
15A16LYS10.8400.90115.457-0.165-0.1650.0000.0000.0000.000
16A17ALA00.0250.01118.5760.0200.0200.0000.0000.0000.000
17A18LEU00.0390.02512.0770.0110.0110.0000.0000.0000.000
18A19LEU0-0.018-0.00515.2540.0310.0310.0000.0000.0000.000
19A20ILE0-0.0070.01117.983-0.020-0.0200.0000.0000.0000.000
20A21GLU-1-0.925-0.95218.6470.7540.7540.0000.0000.0000.000
21A22ALA00.0290.01417.229-0.015-0.0150.0000.0000.0000.000
22A23THR0-0.042-0.04819.380-0.045-0.0450.0000.0000.0000.000
23A24LEU0-0.0050.00022.376-0.037-0.0370.0000.0000.0000.000
24A25ALA00.0150.02121.318-0.031-0.0310.0000.0000.0000.000
25A26CYS0-0.090-0.07121.384-0.032-0.0320.0000.0000.0000.000
26A27LEU0-0.058-0.02623.842-0.037-0.0370.0000.0000.0000.000
27A28LYS10.8500.90926.789-0.415-0.4150.0000.0000.0000.000
28A29ARG10.9200.97523.531-0.598-0.5980.0000.0000.0000.000
29A30HIS0-0.044-0.02422.845-0.048-0.0480.0000.0000.0000.000
30A31GLY00.0820.05428.162-0.027-0.0270.0000.0000.0000.000
31A32PHE00.0670.01928.7910.0250.0250.0000.0000.0000.000
32A33GLN00.0250.01329.3330.0230.0230.0000.0000.0000.000
33A34GLY00.0340.02628.764-0.002-0.0020.0000.0000.0000.000
34A35ALA00.0480.03724.9440.0420.0420.0000.0000.0000.000
35A36SER0-0.007-0.01722.497-0.024-0.0240.0000.0000.0000.000
36A37VAL00.1140.05918.6100.0550.0550.0000.0000.0000.000
37A38ARG10.9550.97717.378-0.477-0.4770.0000.0000.0000.000
38A39LYS10.7760.89317.400-0.385-0.3850.0000.0000.0000.000
39A40ILE00.0870.04018.3250.0920.0920.0000.0000.0000.000
40A41CYS0-0.025-0.00813.8930.0350.0350.0000.0000.0000.000
41A42ALA0-0.033-0.01413.7380.2350.2350.0000.0000.0000.000
42A43GLU-1-0.894-0.93514.4651.0111.0110.0000.0000.0000.000
43A44ALA00.0290.01414.2350.0550.0550.0000.0000.0000.000
44A45GLY0-0.0180.01310.7330.2120.2120.0000.0000.0000.000
45A46VAL0-0.073-0.0499.2230.6450.6450.0000.0000.0000.000
46A47SER0-0.015-0.0118.175-0.150-0.1500.0000.0000.0000.000
47A48VAL00.057-0.00410.091-0.165-0.1650.0000.0000.0000.000
48A49GLY00.0030.01212.389-0.089-0.0890.0000.0000.0000.000
49A50LEU00.0110.0017.895-0.106-0.1060.0000.0000.0000.000
50A51ILE00.0000.00411.544-0.053-0.0530.0000.0000.0000.000
51A52ASN00.027-0.00414.969-0.005-0.0050.0000.0000.0000.000
52A53HIS0-0.057-0.02214.818-0.081-0.0810.0000.0000.0000.000
53A54HIS0-0.103-0.04613.516-0.100-0.1000.0000.0000.0000.000
54A55TYR00.0300.00818.2240.0170.0170.0000.0000.0000.000
55A56ASP-1-0.866-0.92320.4510.1230.1230.0000.0000.0000.000
56A57GLY0-0.005-0.01522.215-0.001-0.0010.0000.0000.0000.000
57A58LYS10.7710.88023.012-0.288-0.2880.0000.0000.0000.000
58A59ASP-1-0.842-0.93524.2600.2360.2360.0000.0000.0000.000
59A60ALA00.0330.03123.726-0.004-0.0040.0000.0000.0000.000
60A61LEU0-0.033-0.01419.1420.0040.0040.0000.0000.0000.000
61A62VAL0-0.012-0.01423.3460.0140.0140.0000.0000.0000.000
62A63ALA00.0320.01826.705-0.004-0.0040.0000.0000.0000.000
63A64GLU-1-0.795-0.88124.4050.1780.1780.0000.0000.0000.000
64A65ALA0-0.021-0.01824.5750.0050.0050.0000.0000.0000.000
65A66TYR00.0000.00626.114-0.006-0.0060.0000.0000.0000.000
66A67LEU00.0290.03028.954-0.011-0.0110.0000.0000.0000.000
67A68ALA0-0.035-0.01025.983-0.011-0.0110.0000.0000.0000.000
68A69VAL0-0.032-0.01427.810-0.006-0.0060.0000.0000.0000.000
69A70THR0-0.007-0.02529.951-0.016-0.0160.0000.0000.0000.000
70A71GLY00.0260.01431.847-0.013-0.0130.0000.0000.0000.000
71A72ARG10.7920.87928.862-0.278-0.2780.0000.0000.0000.000
72A73VAL00.0320.01431.722-0.008-0.0080.0000.0000.0000.000
73A74MET00.0010.01635.102-0.008-0.0080.0000.0000.0000.000
74A75ARG10.9230.95629.387-0.190-0.1900.0000.0000.0000.000
75A76LEU0-0.0150.00133.192-0.008-0.0080.0000.0000.0000.000
76A77LEU00.0080.00636.868-0.008-0.0080.0000.0000.0000.000
77A78ARG10.8250.89838.303-0.104-0.1040.0000.0000.0000.000
78A79GLY00.0320.01839.177-0.007-0.0070.0000.0000.0000.000
79A80ALA00.0110.02340.244-0.006-0.0060.0000.0000.0000.000
80A81ILE0-0.003-0.00942.840-0.006-0.0060.0000.0000.0000.000
81A82ASP-1-0.938-0.98242.1880.0740.0740.0000.0000.0000.000
82A83THR0-0.103-0.06442.148-0.005-0.0050.0000.0000.0000.000
83A84ALA00.0070.02345.190-0.002-0.0020.0000.0000.0000.000
84A85PRO0-0.031-0.03248.173-0.004-0.0040.0000.0000.0000.000
85A86GLY0-0.021-0.00651.382-0.003-0.0030.0000.0000.0000.000
86A87GLY00.0370.01853.964-0.001-0.0010.0000.0000.0000.000
87A88ALA00.005-0.01253.3770.0040.0040.0000.0000.0000.000
88A89ARG10.7780.85052.864-0.071-0.0710.0000.0000.0000.000
89A90PRO00.0070.00552.4610.0040.0040.0000.0000.0000.000
90A91ARG10.8760.95148.562-0.062-0.0620.0000.0000.0000.000
91A92LEU0-0.0010.00348.2100.0050.0050.0000.0000.0000.000
92A93SER00.010-0.02848.6620.0050.0050.0000.0000.0000.000
93A94ALA0-0.040-0.00845.7460.0060.0060.0000.0000.0000.000
94A95PHE00.0520.01343.6000.0080.0080.0000.0000.0000.000
95A96PHE0-0.0020.00244.1820.0080.0080.0000.0000.0000.000
96A97GLU-1-0.888-0.96944.9180.1320.1320.0000.0000.0000.000
97A98ALA0-0.0070.00340.6040.0090.0090.0000.0000.0000.000
98A99SER0-0.046-0.03040.3450.0120.0120.0000.0000.0000.000
99A100PHE0-0.051-0.02941.2690.0070.0070.0000.0000.0000.000
100A101SER00.0010.00238.5790.0070.0070.0000.0000.0000.000
101A102ALA00.0280.00436.1900.0060.0060.0000.0000.0000.000
102A103GLU-1-0.915-0.96333.8620.2140.2140.0000.0000.0000.000
103A104LEU0-0.019-0.00933.9860.0150.0150.0000.0000.0000.000
104A105LEU00.0100.02436.5170.0010.0010.0000.0000.0000.000
105A106ASP-1-0.821-0.89031.7210.3220.3220.0000.0000.0000.000
106A107PRO00.0340.01434.2850.0090.0090.0000.0000.0000.000
107A108GLN0-0.112-0.04627.3410.0460.0460.0000.0000.0000.000
108A109LEU0-0.009-0.01427.3240.0270.0270.0000.0000.0000.000
109A110LEU00.0380.03130.954-0.006-0.0060.0000.0000.0000.000
110A111ASP-1-0.810-0.90231.1720.3190.3190.0000.0000.0000.000
111A112ALA0-0.035-0.01028.884-0.003-0.0030.0000.0000.0000.000
112A113TRP00.0370.01430.823-0.017-0.0170.0000.0000.0000.000
113A114LEU00.0090.01134.040-0.015-0.0150.0000.0000.0000.000
114A115ALA0-0.049-0.02331.368-0.011-0.0110.0000.0000.0000.000
115A116PHE0-0.024-0.02128.224-0.005-0.0050.0000.0000.0000.000
116A117TRP00.0620.01333.580-0.009-0.0090.0000.0000.0000.000
117A118GLY0-0.015-0.00136.569-0.012-0.0120.0000.0000.0000.000
118A119ALA0-0.034-0.02033.085-0.010-0.0100.0000.0000.0000.000
119A120VAL00.0170.00335.049-0.011-0.0110.0000.0000.0000.000
120A121GLY0-0.0100.01237.500-0.012-0.0120.0000.0000.0000.000
121A122SER0-0.105-0.06436.576-0.004-0.0040.0000.0000.0000.000
122A123ILE0-0.0190.01331.350-0.005-0.0050.0000.0000.0000.000
123A124GLU-1-0.786-0.86934.7830.0900.0900.0000.0000.0000.000
124A125ALA0-0.016-0.00730.354-0.004-0.0040.0000.0000.0000.000
125A126ILE0-0.022-0.00729.8590.0070.0070.0000.0000.0000.000
126A127GLY00.0570.02433.538-0.001-0.0010.0000.0000.0000.000
127A128ARG10.8530.89435.518-0.091-0.0910.0000.0000.0000.000
128A129VAL00.0110.01931.653-0.006-0.0060.0000.0000.0000.000
129A130HIS0-0.015-0.00135.1050.0050.0050.0000.0000.0000.000
130A131ASP-1-0.902-0.94037.8470.1080.1080.0000.0000.0000.000
131A132HIS0-0.069-0.03236.732-0.010-0.0100.0000.0000.0000.000
132A133SER0-0.040-0.03836.124-0.002-0.0020.0000.0000.0000.000
133A134TYR00.0610.01538.257-0.007-0.0070.0000.0000.0000.000
134A135GLY0-0.014-0.01041.494-0.006-0.0060.0000.0000.0000.000
135A136GLU-1-0.810-0.89737.9770.1010.1010.0000.0000.0000.000
136A137TYR0-0.041-0.05440.630-0.006-0.0060.0000.0000.0000.000
137A138ARG10.9260.98042.316-0.097-0.0970.0000.0000.0000.000
138A139ALA0-0.008-0.00244.662-0.004-0.0040.0000.0000.0000.000
139A140LEU0-0.0280.00142.197-0.005-0.0050.0000.0000.0000.000
140A141LEU00.0300.01945.650-0.004-0.0040.0000.0000.0000.000
141A142VAL0-0.042-0.03048.100-0.004-0.0040.0000.0000.0000.000
142A143GLY0-0.0090.00449.208-0.005-0.0050.0000.0000.0000.000
143A144VAL00.0190.01449.316-0.004-0.0040.0000.0000.0000.000
144A145LEU0-0.002-0.00651.494-0.003-0.0030.0000.0000.0000.000
145A146ARG10.8020.87952.917-0.059-0.0590.0000.0000.0000.000
146A147GLN00.0040.01152.974-0.001-0.0010.0000.0000.0000.000
147A148LEU00.007-0.00555.558-0.002-0.0020.0000.0000.0000.000
148A149ALA0-0.031-0.01657.413-0.002-0.0020.0000.0000.0000.000
149A150GLU-1-0.992-0.98258.4800.0390.0390.0000.0000.0000.000
150A151GLU-1-0.839-0.92257.1420.0560.0560.0000.0000.0000.000
151A152GLY0-0.0170.01561.345-0.001-0.0010.0000.0000.0000.000
152A153GLY0-0.0050.01263.312-0.001-0.0010.0000.0000.0000.000
153A154TRP0-0.103-0.08859.0980.0000.0000.0000.0000.0000.000
154A155ALA00.004-0.00863.6240.0010.0010.0000.0000.0000.000
155A156ASP-1-0.816-0.88863.3770.0430.0430.0000.0000.0000.000
156A157PHE00.0150.01456.5700.0020.0020.0000.0000.0000.000
157A158ASP-1-0.852-0.92257.0170.0590.0590.0000.0000.0000.000
158A159ALA00.025-0.00554.3570.0030.0030.0000.0000.0000.000
159A160GLU-1-0.807-0.87551.4130.0680.0680.0000.0000.0000.000
160A161LEU0-0.004-0.00752.3980.0050.0050.0000.0000.0000.000
161A162ALA0-0.014-0.00654.1350.0040.0040.0000.0000.0000.000
162A163ALA00.0600.02549.3280.0040.0040.0000.0000.0000.000
163A164ILE0-0.0250.00149.3910.0060.0060.0000.0000.0000.000
164A165SER0-0.053-0.01750.0450.0050.0050.0000.0000.0000.000
165A166LEU00.0190.00948.9770.0040.0040.0000.0000.0000.000
166A167SER00.001-0.01945.7270.0060.0060.0000.0000.0000.000
167A168ALA0-0.014-0.00446.4250.0070.0070.0000.0000.0000.000
168A169LEU0-0.042-0.00948.1600.0040.0040.0000.0000.0000.000
169A170LEU00.0160.00444.7750.0040.0040.0000.0000.0000.000
170A171ASP-1-0.819-0.89943.0240.1490.1490.0000.0000.0000.000
171A172GLY0-0.014-0.00543.6200.0080.0080.0000.0000.0000.000
172A173LEU0-0.037-0.02345.9050.0050.0050.0000.0000.0000.000
173A174TRP0-0.022-0.02435.8990.0060.0060.0000.0000.0000.000
174A175LEU0-0.005-0.00240.7810.0110.0110.0000.0000.0000.000
175A176GLU-1-0.838-0.89942.1890.1680.1680.0000.0000.0000.000
176A177SER0-0.030-0.01842.1610.0070.0070.0000.0000.0000.000
177A178GLY00.002-0.00639.0820.0090.0090.0000.0000.0000.000
178A179LEU0-0.079-0.04039.2840.0130.0130.0000.0000.0000.000
179A180ASN0-0.020-0.03141.6500.0110.0110.0000.0000.0000.000
180A181PRO00.0110.01840.070-0.009-0.0090.0000.0000.0000.000
181A182ALA0-0.067-0.02543.091-0.006-0.0060.0000.0000.0000.000
182A183THR0-0.077-0.05646.411-0.008-0.0080.0000.0000.0000.000
183A184PHE0-0.077-0.03645.774-0.010-0.0100.0000.0000.0000.000
184A185THR00.001-0.01146.6310.0060.0060.0000.0000.0000.000
185A186PRO00.0700.01743.062-0.006-0.0060.0000.0000.0000.000
186A187ARG10.9900.99645.508-0.127-0.1270.0000.0000.0000.000
187A188GLN00.0450.04048.642-0.001-0.0010.0000.0000.0000.000
188A189GLY00.0610.04247.487-0.004-0.0040.0000.0000.0000.000
189A190VAL00.0120.01547.052-0.005-0.0050.0000.0000.0000.000
190A191GLN0-0.038-0.01749.377-0.002-0.0020.0000.0000.0000.000
191A192ILE0-0.003-0.00451.357-0.006-0.0060.0000.0000.0000.000
192A193CYS0-0.039-0.00649.268-0.002-0.0020.0000.0000.0000.000
193A194GLU-1-0.765-0.86651.8300.0840.0840.0000.0000.0000.000
194A195ALA00.0040.01554.374-0.005-0.0050.0000.0000.0000.000
195A196TRP0-0.027-0.01553.952-0.004-0.0040.0000.0000.0000.000
196A197VAL0-0.0020.00053.975-0.004-0.0040.0000.0000.0000.000
197A198ASP-1-0.829-0.90056.8390.0730.0730.0000.0000.0000.000
198A199GLY0-0.009-0.00459.601-0.004-0.0040.0000.0000.0000.000
199A200LEU0-0.023-0.01156.446-0.004-0.0040.0000.0000.0000.000
200A201GLU-1-0.872-0.91560.0990.0590.0590.0000.0000.0000.000
201A202ALA0-0.016-0.00262.529-0.003-0.0030.0000.0000.0000.000
202A203GLY0-0.060-0.05564.253-0.003-0.0030.0000.0000.0000.000
203A204ALA00.0070.01561.208-0.002-0.0020.0000.0000.0000.000
204A205HIS10.8570.92261.400-0.055-0.0550.0000.0000.0000.000
205A206ARG10.9500.98162.370-0.053-0.0530.0000.0000.0000.000
206A207ARG10.9080.96162.502-0.061-0.0610.0000.0000.0000.000
207A208PHE00.0060.02956.6150.0000.0000.0000.0000.0000.000
208A209ARG10.7800.86659.933-0.052-0.0520.0000.0000.0000.000