FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 5YLZZ

Calculation Name: 1AE5-A-Xray547

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 1AE5

Chain ID: A

ChEMBL ID:

UniProt ID: P20160

Base Structure: X-ray

Registration Date: 2025-10-05

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Homology Modeling
Water No
Procedure Manual calculation
Remarks
ac.sh, 23 2024 Oct; Missing atoms/residues were imported from a 100% homology model, which was constructed by MOE.
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 221
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -2644604.331167
FMO2-HF: Nuclear repulsion 2558107.898652
FMO2-HF: Total energy -86496.432515
FMO2-MP2: Total energy -86744.262988


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:ILE)


Summations of interaction energy for fragment #1(A:1:ILE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
15.84532.16841.097-23.84-33.575-0.252
Interaction energy analysis for fragmet #1(A:1:ILE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.735 / q_NPA : 0.875
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3GLY00.0330.0142.739-0.3481.8210.802-1.243-1.728-0.006
4A4GLY0-0.0090.0152.5073.3314.2110.753-0.649-0.9840.001
5A5ARG10.9430.9813.22925.46725.0450.0340.527-0.1390.000
124A125VAL00.0580.0462.440-0.551-0.1171.272-0.308-1.3980.000
125A126ALA0-0.004-0.0172.445-5.746-4.3300.678-0.810-1.284-0.003
126A127GLY00.0700.0482.6272.0212.8970.740-0.188-1.429-0.003
127A128TRP0-0.037-0.0293.339-4.666-4.1240.086-0.035-0.592-0.002
128A129GLY00.0540.0332.9607.6198.3230.138-0.265-0.576-0.001
129A130SER0-0.058-0.0392.160-23.297-23.4915.936-2.998-2.744-0.034
130A131GLN0-0.003-0.0212.029-29.909-29.1064.187-2.643-2.347-0.034
131A132ARG10.9690.9844.58332.35232.474-0.001-0.016-0.1040.000
137A138SER0-0.066-0.0334.4516.8216.894-0.001-0.006-0.0660.000
141A142ARG10.8460.9102.13049.65150.3261.840-0.808-1.7070.000
142A143PHE00.0240.0142.687-5.403-3.4100.809-0.902-1.899-0.011
143A144VAL0-0.022-0.0122.5220.3270.9922.064-0.452-2.277-0.003
144A145ASN00.0230.0193.972-0.356-0.2430.0020.003-0.1180.000
167A169GLY00.0510.0423.0934.9465.4350.020-0.136-0.3730.000
168A170ILE0-0.0100.0002.296-28.502-24.4824.451-4.079-4.392-0.041
169A171CYS00.0120.0133.20211.66812.1800.0160.044-0.571-0.002
170A172ASN00.0570.0054.5900.8110.913-0.001-0.004-0.0970.000
171A173GLY00.0400.0235.106-6.624-6.603-0.001-0.002-0.0180.000
172A174ASP-1-0.812-0.8941.895-133.941-134.07617.188-8.751-8.302-0.112
173A175GLY00.0710.0424.7673.4283.526-0.001-0.025-0.0710.000
175A177THR0-0.085-0.0422.8602.5512.9180.086-0.094-0.359-0.001
6A6LYS10.8980.9565.60319.25919.2590.0000.0000.0000.000
7A7ALA00.0660.0357.0002.0882.0880.0000.0000.0000.000
8A8ARG10.9710.9888.73617.92717.9270.0000.0000.0000.000
9A9PRO0-0.003-0.02111.763-0.875-0.8750.0000.0000.0000.000
10A10ARG10.9370.96113.53516.00016.0000.0000.0000.0000.000
11A11GLN00.0030.0299.4170.5090.5090.0000.0000.0000.000
12A12PHE00.011-0.0037.246-0.590-0.5900.0000.0000.0000.000
13A13PRO0-0.0050.00310.645-1.008-1.0080.0000.0000.0000.000
14A14PHE00.0810.0609.0240.4200.4200.0000.0000.0000.000
15A15LEU0-0.052-0.0206.582-0.382-0.3820.0000.0000.0000.000
16A16ALA00.0110.01110.4951.4551.4550.0000.0000.0000.000
17A17SER0-0.096-0.06410.097-1.965-1.9650.0000.0000.0000.000
18A18ILE00.0370.02111.2682.2472.2470.0000.0000.0000.000
19A19GLN0-0.022-0.03712.665-0.430-0.4300.0000.0000.0000.000
20A20ASN00.0580.03015.1321.6141.6140.0000.0000.0000.000
21A21GLN00.0490.02217.827-0.451-0.4510.0000.0000.0000.000
22A22GLY0-0.0230.00017.7990.0360.0360.0000.0000.0000.000
23A23ARG10.8460.92413.76819.04619.0460.0000.0000.0000.000
24A24HIS0-0.009-0.0017.0133.2933.2930.0000.0000.0000.000
25A25PHE0-0.060-0.03810.211-1.106-1.1060.0000.0000.0000.000
26A26CYS0-0.115-0.0438.823-2.952-2.9520.0000.0000.0000.000
27A27GLY00.0040.0137.2670.3900.3900.0000.0000.0000.000
28A28GLY00.0680.0408.3081.8961.8960.0000.0000.0000.000
29A29ALA0-0.040-0.0239.800-1.369-1.3690.0000.0000.0000.000
30A30LEU0-0.0220.00511.9600.8350.8350.0000.0000.0000.000
31A31ILE00.019-0.00215.268-0.203-0.2030.0000.0000.0000.000
32A32HIS00.0980.04717.5680.2970.2970.0000.0000.0000.000
33A33ALA00.0200.01520.407-0.466-0.4660.0000.0000.0000.000
34A34ARG10.8850.94122.55610.58310.5830.0000.0000.0000.000
35A35PHE00.0670.02319.928-0.020-0.0200.0000.0000.0000.000
36A36VAL0-0.029-0.01213.799-0.528-0.5280.0000.0000.0000.000
37A37MET0-0.0150.02012.8380.6440.6440.0000.0000.0000.000
38A38THR0-0.017-0.03711.101-1.698-1.6980.0000.0000.0000.000
39A39ALA00.0400.02311.4220.8520.8520.0000.0000.0000.000
40A40ALA0-0.002-0.00413.1510.3110.3110.0000.0000.0000.000
41A41SER0-0.005-0.02513.608-0.089-0.0890.0000.0000.0000.000
42A43PHE0-0.015-0.01714.219-0.044-0.0440.0000.0000.0000.000
43A44GLN00.0720.05717.8640.4190.4190.0000.0000.0000.000
44A45SER0-0.0020.00917.0190.5470.5470.0000.0000.0000.000
45A46GLN0-0.027-0.02316.668-0.319-0.3190.0000.0000.0000.000
46A47ASN00.0320.01719.615-0.407-0.4070.0000.0000.0000.000
47A48PRO00.0860.04419.984-0.206-0.2060.0000.0000.0000.000
48A49GLY00.014-0.00121.016-0.250-0.2500.0000.0000.0000.000
49A50VAL0-0.027-0.00822.9360.4050.4050.0000.0000.0000.000
50A51SER0-0.045-0.01117.806-0.693-0.6930.0000.0000.0000.000
51A52THR0-0.036-0.02118.2250.5320.5320.0000.0000.0000.000
52A53VAL00.0420.02315.438-1.467-1.4670.0000.0000.0000.000
53A54VAL0-0.037-0.02314.5880.9970.9970.0000.0000.0000.000
54A55LEU00.0860.04713.991-1.706-1.7060.0000.0000.0000.000
55A56GLY00.0710.03214.8120.6040.6040.0000.0000.0000.000
56A57ALA0-0.056-0.01312.5730.7710.7710.0000.0000.0000.000
57A58TYR0-0.040-0.06310.751-0.670-0.6700.0000.0000.0000.000
58A59ASP-1-0.791-0.87711.131-22.978-22.9780.0000.0000.0000.000
59A60LEU00.0820.0279.1082.0582.0580.0000.0000.0000.000
60A61ARG10.8890.95012.88220.37720.3770.0000.0000.0000.000
61A62ARG10.8520.92915.42118.05418.0540.0000.0000.0000.000
62A63ARG10.9870.97117.94913.51413.5140.0000.0000.0000.000
63A64GLU-1-0.740-0.85615.497-19.741-19.7410.0000.0000.0000.000
64A65ARG11.0311.00819.97411.94511.9450.0000.0000.0000.000
65A66GLN00.0290.02922.9930.0150.0150.0000.0000.0000.000
66A67SER0-0.075-0.03517.2960.1930.1930.0000.0000.0000.000
67A68ARG10.8170.90615.23218.31118.3110.0000.0000.0000.000
68A69GLN0-0.0050.00018.5511.1431.1430.0000.0000.0000.000
69A70THR0-0.027-0.01218.750-1.056-1.0560.0000.0000.0000.000
70A71PHE0-0.0160.00319.4760.7280.7280.0000.0000.0000.000
71A72SER00.0370.01820.872-0.794-0.7940.0000.0000.0000.000
72A73ILE0-0.026-0.01518.553-0.052-0.0520.0000.0000.0000.000
73A74SER0-0.047-0.03422.5210.3070.3070.0000.0000.0000.000
74A75SER00.0300.02624.3180.3090.3090.0000.0000.0000.000
75A76MET0-0.013-0.00920.560-0.674-0.6740.0000.0000.0000.000
76A77SER00.0030.00721.5130.7030.7030.0000.0000.0000.000
77A78GLU-1-0.841-0.91820.707-13.286-13.2860.0000.0000.0000.000
78A79ASN00.003-0.00221.6680.8200.8200.0000.0000.0000.000
79A80GLY00.0540.03323.5180.0630.0630.0000.0000.0000.000
80A81TYR0-0.052-0.05017.792-0.474-0.4740.0000.0000.0000.000
81A82ASP-1-0.787-0.89621.808-12.435-12.4350.0000.0000.0000.000
82A83PRO0-0.031-0.02420.218-0.656-0.6560.0000.0000.0000.000
83A84GLN0-0.080-0.03020.840-0.262-0.2620.0000.0000.0000.000
84A85GLN0-0.004-0.00221.326-0.657-0.6570.0000.0000.0000.000
85A86ASN0-0.019-0.00616.137-1.489-1.4890.0000.0000.0000.000
86A87LEU0-0.014-0.00117.625-0.565-0.5650.0000.0000.0000.000
87A88ASN00.034-0.00919.207-0.025-0.0250.0000.0000.0000.000
88A89ASP-1-0.735-0.79513.932-20.400-20.4000.0000.0000.0000.000
89A90LEU0-0.041-0.01314.502-1.436-1.4360.0000.0000.0000.000
90A91MET0-0.029-0.01115.6551.1821.1820.0000.0000.0000.000
91A92LEU0-0.014-0.00116.247-0.993-0.9930.0000.0000.0000.000
92A93LEU0-0.013-0.01515.9860.4730.4730.0000.0000.0000.000
93A94GLN00.0270.01019.4080.0560.0560.0000.0000.0000.000
94A95LEU0-0.019-0.01518.716-0.246-0.2460.0000.0000.0000.000
95A96ASP-1-0.795-0.88122.717-11.774-11.7740.0000.0000.0000.000
96A97ARG10.7990.87923.79312.79412.7940.0000.0000.0000.000
97A98GLU-1-0.865-0.91924.557-11.042-11.0420.0000.0000.0000.000
98A99ALA0-0.020-0.01621.2000.0840.0840.0000.0000.0000.000
99A100ASN0-0.0070.00123.1450.4280.4280.0000.0000.0000.000
100A101LEU00.0370.02420.740-0.650-0.6500.0000.0000.0000.000
101A102THR00.0160.00220.8240.3220.3220.0000.0000.0000.000
102A103SER00.0180.00320.340-0.232-0.2320.0000.0000.0000.000
103A104SER0-0.133-0.09016.915-0.314-0.3140.0000.0000.0000.000
104A105VAL00.0090.02016.068-1.204-1.2040.0000.0000.0000.000
105A106THR00.0190.00216.6650.6130.6130.0000.0000.0000.000
106A107ILE00.0370.02416.675-0.662-0.6620.0000.0000.0000.000
107A108LEU0-0.047-0.02011.235-0.082-0.0820.0000.0000.0000.000
108A109PRO00.0090.00615.4020.2500.2500.0000.0000.0000.000
109A110LEU00.0550.01516.293-0.916-0.9160.0000.0000.0000.000
110A111PRO0-0.0040.00816.5690.6630.6630.0000.0000.0000.000
111A112LEU00.0290.02019.6600.1820.1820.0000.0000.0000.000
112A113GLN00.0420.00922.333-0.659-0.6590.0000.0000.0000.000
113A114ASN0-0.042-0.02423.5240.0540.0540.0000.0000.0000.000
114A115ALA0-0.0200.01221.1720.1220.1220.0000.0000.0000.000
115A116THR0-0.028-0.03019.986-0.424-0.4240.0000.0000.0000.000
116A117VAL00.0150.00015.075-0.101-0.1010.0000.0000.0000.000
117A118GLU-1-0.875-0.92418.269-12.438-12.4380.0000.0000.0000.000
118A119ALA00.0180.01217.561-0.749-0.7490.0000.0000.0000.000
119A120GLY0-0.015-0.00616.8590.5480.5480.0000.0000.0000.000
120A121THR0-0.013-0.02215.2160.1060.1060.0000.0000.0000.000
121A122ARG10.8550.93012.73514.64714.6470.0000.0000.0000.000
122A123CYS0-0.0130.0089.8370.1240.1240.0000.0000.0000.000
123A124GLN0-0.075-0.0517.262-1.200-1.2000.0000.0000.0000.000
132A133SER00.1090.0386.915-2.993-2.9930.0000.0000.0000.000
133A134GLY00.0250.0228.9532.3322.3320.0000.0000.0000.000
134A135GLY0-0.075-0.0248.1172.3622.3620.0000.0000.0000.000
135A136ARG10.9480.9618.19422.89022.8900.0000.0000.0000.000
136A137LEU00.0260.0166.001-3.844-3.8440.0000.0000.0000.000
138A139ARG10.8400.8796.12022.36622.3660.0000.0000.0000.000
139A140PHE0-0.0100.0048.4152.8072.8070.0000.0000.0000.000
140A141PRO00.0610.0655.920-4.883-4.8830.0000.0000.0000.000
145A146VAL0-0.016-0.0095.901-1.108-1.1080.0000.0000.0000.000
146A147THR00.001-0.0058.6411.2701.2700.0000.0000.0000.000
147A148VAL00.0290.01912.056-1.153-1.1530.0000.0000.0000.000
148A149THR0-0.033-0.02713.5760.4300.4300.0000.0000.0000.000
149A150PRO00.0500.01815.9410.1970.1970.0000.0000.0000.000
150A151GLU-1-0.846-0.92218.697-13.793-13.7930.0000.0000.0000.000
151A152ASP-1-0.858-0.91820.541-13.226-13.2260.0000.0000.0000.000
152A153GLN0-0.103-0.05817.720-0.500-0.5000.0000.0000.0000.000
153A154CYS0-0.058-0.00512.256-2.486-2.4860.0000.0000.0000.000
154A155ARG10.8670.89717.32116.55116.5510.0000.0000.0000.000
155A156PRO00.0690.02319.196-0.611-0.6110.0000.0000.0000.000
156A157ASN0-0.0060.00819.083-0.664-0.6640.0000.0000.0000.000
157A158ASN00.016-0.00614.1860.0660.0660.0000.0000.0000.000
158A159VAL00.0370.03613.0660.9000.9000.0000.0000.0000.000
159A161THR0-0.013-0.0057.9120.1880.1880.0000.0000.0000.000
160A162GLY00.0780.0369.264-0.519-0.5190.0000.0000.0000.000
161A163VAL0-0.055-0.0186.902-0.406-0.4060.0000.0000.0000.000
162A164LEU00.0640.0329.8790.8450.8450.0000.0000.0000.000
163A165THR0-0.033-0.0129.0040.5620.5620.0000.0000.0000.000
164A166ARG10.9760.98311.18217.62117.6210.0000.0000.0000.000
165A167ARG10.8940.9518.25125.29725.2970.0000.0000.0000.000
166A168GLY00.020-0.0054.853-0.489-0.4890.0000.0000.0000.000
174A176GLY00.0770.0117.9580.0720.0720.0000.0000.0000.000
176A178PRO0-0.0060.0026.3470.5560.5560.0000.0000.0000.000
177A179LEU0-0.036-0.0196.224-3.330-3.3300.0000.0000.0000.000
178A180VAL0-0.026-0.0178.2371.9751.9750.0000.0000.0000.000
179A182GLU-1-0.871-0.94513.210-13.760-13.7600.0000.0000.0000.000
180A183GLY0-0.026-0.00914.5920.6410.6410.0000.0000.0000.000
181A184LEU0-0.0020.00315.487-0.010-0.0100.0000.0000.0000.000
182A185ALA00.001-0.01712.335-1.162-1.1620.0000.0000.0000.000
183A186HIS00.0510.01213.0580.4260.4260.0000.0000.0000.000
184A187GLY0-0.024-0.00811.1410.5900.5900.0000.0000.0000.000
185A188VAL0-0.0030.0079.513-1.280-1.2800.0000.0000.0000.000
186A189ALA0-0.054-0.0235.9320.7720.7720.0000.0000.0000.000
187A190SER0-0.012-0.0158.0500.3110.3110.0000.0000.0000.000
188A191PHE00.0100.00110.116-1.163-1.1630.0000.0000.0000.000
189A192SER0-0.044-0.0148.172-0.186-0.1860.0000.0000.0000.000
190A193LEU00.0640.04210.7010.5370.5370.0000.0000.0000.000
191A194GLY0-0.0010.00613.5580.6130.6130.0000.0000.0000.000
192A195PRO0-0.065-0.04311.325-1.720-1.7200.0000.0000.0000.000
193A197GLY00.001-0.0036.8200.3580.3580.0000.0000.0000.000
194A198ARG10.8660.9267.42621.73121.7310.0000.0000.0000.000
195A199GLY00.0390.05010.1571.1851.1850.0000.0000.0000.000
196A200PRO00.0270.00411.1960.9850.9850.0000.0000.0000.000
197A201ASP-1-0.832-0.9456.260-38.585-38.5850.0000.0000.0000.000
198A202PHE00.0060.0049.6131.4401.4400.0000.0000.0000.000
199A203PHE0-0.010-0.0165.444-2.422-2.4220.0000.0000.0000.000
200A204THR0-0.015-0.01411.1271.3091.3090.0000.0000.0000.000
201A205ARG10.8700.92513.85414.01114.0110.0000.0000.0000.000
202A206VAL00.0280.01613.7290.9190.9190.0000.0000.0000.000
203A207ALA00.0130.01216.6100.5920.5920.0000.0000.0000.000
204A208LEU0-0.029-0.00919.6130.6240.6240.0000.0000.0000.000
205A209PHE0-0.0030.00518.4720.4050.4050.0000.0000.0000.000
206A210ARG10.7970.88521.10712.21612.2160.0000.0000.0000.000
207A211ASP-1-0.810-0.92122.318-10.498-10.4980.0000.0000.0000.000
208A212TRP0-0.049-0.01519.884-0.029-0.0290.0000.0000.0000.000
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