FMO DATABASE

FMODB ID: 63Q6Z

Calculation Name: 2C1M-B-Xray308

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 2C1M

Chain ID: B

ChEMBL ID:

UniProt ID: P52293

Base Structure: X-ray

Registration Date: 2021-09-06

Reference: C. Watanabe, S. Koyama, K. Kamisaka, D. Takaya, T. Honma et. al., Interaction energy analysis of Apo structure dataset on FMODB, To be pubulished.

DOI:

IFIE MAP

IFIE Diagram

Modeling method

Optimization	MOE:Amber10:EHT
Restraint	OptH
Protonation	MOE:Protonate 3D
Complement	MOE:Structure Preparation
Water	No
Procedure	Auto-FMO protocol ver. 1.20200116

FMO calculation

FMO method	FMO2-MP2/6-31G(d)
Fragmentation	Auto
Number of fragment	46
LigandCharge
Software	ABINIT-MP - Open Ver.1 Rev. 15 / 20190524

Total energy (hartree)

FMO2-HF: Electronic energy	-158991.521136
FMO2-HF: Nuclear repulsion	139371.815
FMO2-HF: Total energy	-19619.706136
FMO2-MP2: Total energy	-19674.706839

3D Structure

Snapshot

Ligand structure

Ligand Interaction

Ligand binding energy

IFIE [kcal/mol]	PIEDA [kcal/mol]				Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level.	ESElectro static interaction energy.	EXExchange-repulsion energy.	CT+mixCharge transfer and mixing terms energy.	DI(MP2)Dispersion energy.	q(I=>J)Charge transfer value from I to J fragments.
N/A	N/A	N/A	N/A	N/A	N/A

Interactive mode: IFIE and PIEDA for fragment #1(B:1:MET )

Summations of interaction energy for fragment #1(B:1:MET )

IFIE [kcal/mol]	PIEDA [kcal/mol]				Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level.	ESElectro static interaction energy.	EXExchange-repulsion energy.	CT+mixCharge transfer and mixing terms energy.	DI(MP2)Dispersion energy.	q(I=>J)Charge transfer value from I to J fragments.
-3.207	-4.095	8.646	-2.125	-5.633	0.014

Interaction energy analysis for fragmet #1(B:1:MET )

Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE

Single fragment	Multi fragments
	Fragment list

Charge [e] FCHARGE : 0 / q_Mulliken : 0.001 / q_NPA : -0.020

Distance from base fragment(s) [Å]

Dist

Interaction energy by IFIE and PIEDA
[kcal/mol]

| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >

Fragment charge [e]

FCHARGE q_Mulliken
q_NPA q(I=>J)

Residue

Res # RES

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X Axis Label
Y Axis Max Y Axis Min
Display ES EX CT+mix DI(MP2)

frag_NumFragment number.	ChainChain species.	Res #Residue number.	RES3-letter code of amino acid residue, ligand and solvent molecule.	FCHARGEFormal charge [e].	q_MullikenFragment charge evaluated by Mulliken charge [e].	q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e].	DISTDistance from Ligand [Å].	TotalIFIE at MP2 level [kcal/mol].	ESElectro static interaction energy by PIEDA [kcal/mol].	EXExchange-repulsion energy by PIEDA [kcal/mol].	CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol].	DI(MP2)Dispersion energy by PIEDA [kcal/mol].	q(I=>J)Charge transfer value from I to J fragmens [e].
3	B	3	LYS	1	0.895	0.935	1.977	-1.490	-2.455	8.645	-2.147	-5.533	0.014
4	B	4	ARG	1	0.999	0.989	3.856	-0.385	-0.308	0.001	0.022	-0.100	0.000
5	B	5	VAL	0	-0.009	0.021	6.981	0.219	0.219	0.000	0.000	0.000	0.000
6	B	6	ALA	0	0.001	-0.011	9.817	0.037	0.037	0.000	0.000	0.000	0.000
7	B	7	GLU	-1	-0.930	-0.954	13.249	-0.381	-0.381	0.000	0.000	0.000	0.000
8	B	8	LYS	1	1.001	1.004	15.406	0.173	0.173	0.000	0.000	0.000	0.000
9	B	9	GLU	-1	-0.988	-0.993	17.508	-0.428	-0.428	0.000	0.000	0.000	0.000
10	B	10	LEU	0	-0.010	0.007	18.810	0.031	0.031	0.000	0.000	0.000	0.000
11	B	11	THR	0	-0.039	-0.033	20.718	-0.005	-0.005	0.000	0.000	0.000	0.000
12	B	12	ASP	-1	-0.909	-0.961	23.452	-0.131	-0.131	0.000	0.000	0.000	0.000
13	B	13	ARG	1	0.926	0.939	26.445	0.181	0.181	0.000	0.000	0.000	0.000
14	B	14	ASN	0	-0.008	0.003	23.112	0.009	0.009	0.000	0.000	0.000	0.000
15	B	15	TRP	0	-0.074	-0.029	24.742	0.000	0.000	0.000	0.000	0.000	0.000
16	B	16	ASP	-1	-0.954	-0.966	25.682	-0.063	-0.063	0.000	0.000	0.000	0.000
17	B	17	GLU	-1	-0.957	-0.991	26.968	-0.153	-0.153	0.000	0.000	0.000	0.000
18	B	18	GLU	-1	-0.985	-0.978	27.682	-0.070	-0.070	0.000	0.000	0.000	0.000
19	B	19	ASP	-1	-0.935	-0.973	23.225	-0.138	-0.138	0.000	0.000	0.000	0.000
20	B	20	GLU	-1	-0.931	-0.956	25.104	-0.156	-0.156	0.000	0.000	0.000	0.000
21	B	21	VAL	0	-0.160	-0.082	27.049	0.012	0.012	0.000	0.000	0.000	0.000
22	B	22	GLU	-1	-0.891	-0.941	22.806	-0.139	-0.139	0.000	0.000	0.000	0.000
23	B	23	GLU	-1	-0.996	-0.995	26.530	-0.043	-0.043	0.000	0.000	0.000	0.000
24	B	24	MET	0	-0.061	-0.031	24.969	0.000	0.000	0.000	0.000	0.000	0.000
25	B	25	GLY	0	0.057	0.038	26.259	-0.010	-0.010	0.000	0.000	0.000	0.000
26	B	26	THR	0	-0.073	-0.051	28.760	0.014	0.014	0.000	0.000	0.000	0.000
27	B	27	PHE	0	-0.015	-0.001	25.797	-0.009	-0.009	0.000	0.000	0.000	0.000
28	B	28	SER	0	0.026	0.008	26.813	0.003	0.003	0.000	0.000	0.000	0.000
29	B	29	VAL	0	-0.007	-0.005	27.866	0.002	0.002	0.000	0.000	0.000	0.000
30	B	30	ALA	0	-0.029	-0.022	29.224	-0.008	-0.008	0.000	0.000	0.000	0.000
31	B	31	SER	0	0.074	0.034	30.404	0.008	0.008	0.000	0.000	0.000	0.000
32	B	32	GLU	-1	-0.884	-0.955	33.562	-0.036	-0.036	0.000	0.000	0.000	0.000
33	B	33	GLU	-1	-0.961	-0.976	34.090	-0.074	-0.074	0.000	0.000	0.000	0.000
34	B	34	VAL	0	-0.014	-0.013	29.188	0.002	0.002	0.000	0.000	0.000	0.000
35	B	35	MET	0	-0.011	-0.023	31.035	0.007	0.007	0.000	0.000	0.000	0.000
36	B	36	LYS	1	0.921	0.982	33.758	0.054	0.054	0.000	0.000	0.000	0.000
37	B	37	ASN	0	-0.002	-0.005	33.312	0.008	0.008	0.000	0.000	0.000	0.000
38	B	38	ARG	1	0.927	0.982	26.391	0.054	0.054	0.000	0.000	0.000	0.000
39	B	39	ALA	0	0.008	0.019	30.874	0.005	0.005	0.000	0.000	0.000	0.000
40	B	40	VAL	0	0.016	-0.005	30.417	0.004	0.004	0.000	0.000	0.000	0.000
41	B	41	LYS	1	0.956	0.978	30.217	-0.061	-0.061	0.000	0.000	0.000	0.000
42	B	42	LYS	1	0.993	1.007	32.249	-0.045	-0.045	0.000	0.000	0.000	0.000
43	B	43	ALA	0	0.018	0.008	31.385	0.006	0.006	0.000	0.000	0.000	0.000
44	B	44	LYS	1	0.927	0.957	33.136	-0.108	-0.108	0.000	0.000	0.000	0.000
45	B	45	ARG	1	0.917	0.952	33.944	-0.062	-0.062	0.000	0.000	0.000	0.000
46	B	46	ARG	0	0.123	0.070	31.586	-0.041	-0.041	0.000	0.000	0.000	0.000

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Interactive mode: IFIE and PIEDA for fragment #1(B:1:MET )