Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-05-02

All entries: 37386

Number of unique PDB entries: 7781

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FMODB ID: 662LZ

Calculation Name: 1UUN-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1UUN

Chain ID: A

ChEMBL ID:

UniProt ID: A0QR29

Base Structure: X-ray

Registration Date: 2023-06-20

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 184
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -1459394.100722
FMO2-HF: Nuclear repulsion 1392077.419077
FMO2-HF: Total energy -67316.681645
FMO2-MP2: Total energy -67517.248677


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:GLY)


Summations of interaction energy for fragment #1(A:1:GLY)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-10.445-11.93711.37-5.238-4.641-0.04
Interaction energy analysis for fragmet #1(A:1:GLY)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.005 / q_NPA : -0.004
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3ASP-1-0.794-0.8793.862-4.533-3.261-0.005-0.598-0.6690.002
4A4ASN0-0.031-0.0046.1031.1391.1390.0000.0000.0000.000
5A5GLU-1-0.861-0.9219.205-1.170-1.1700.0000.0000.0000.000
6A6LEU0-0.025-0.00711.4280.1430.1430.0000.0000.0000.000
7A7SER0-0.010-0.02015.230-0.043-0.0430.0000.0000.0000.000
8A8LEU0-0.048-0.02317.9070.0230.0230.0000.0000.0000.000
9A9VAL0-0.034-0.00221.670-0.003-0.0030.0000.0000.0000.000
10A10ASP-1-0.774-0.87524.481-0.238-0.2380.0000.0000.0000.000
11A11GLY0-0.003-0.01926.1960.0170.0170.0000.0000.0000.000
12A12GLN0-0.118-0.06828.5350.0170.0170.0000.0000.0000.000
13A13ASP-1-0.928-0.96128.188-0.147-0.1470.0000.0000.0000.000
14A14ARG10.7850.89423.8160.2280.2280.0000.0000.0000.000
15A15THR0-0.024-0.01519.292-0.009-0.0090.0000.0000.0000.000
16A16LEU00.0130.01619.631-0.015-0.0150.0000.0000.0000.000
17A17THR00.0220.00913.3090.0210.0210.0000.0000.0000.000
18A18VAL0-0.0070.00913.861-0.008-0.0080.0000.0000.0000.000
19A19GLN00.021-0.0058.527-0.296-0.2960.0000.0000.0000.000
20A20GLN0-0.038-0.0318.3050.1710.1710.0000.0000.0000.000
21A21TRP00.006-0.0262.851-1.478-0.7280.657-0.439-0.969-0.003
22A22ASP-1-0.819-0.9051.838-8.980-12.72010.704-4.149-2.815-0.039
23A23THR0-0.092-0.0573.7422.0252.2510.014-0.052-0.1880.000
24A24PHE0-0.056-0.0246.9700.3030.3030.0000.0000.0000.000
25A25LEU00.0020.0049.3710.0590.0590.0000.0000.0000.000
26A26ASN00.0210.01313.1230.1140.1140.0000.0000.0000.000
27A27GLY00.0370.00514.8040.0130.0130.0000.0000.0000.000
28A28VAL0-0.063-0.03018.2810.0360.0360.0000.0000.0000.000
29A29PHE0-0.031-0.02321.243-0.004-0.0040.0000.0000.0000.000
30A30PRO00.0020.01224.9620.0030.0030.0000.0000.0000.000
31A31LEU00.0530.02926.7060.0180.0180.0000.0000.0000.000
32A32ASP-1-0.790-0.87428.429-0.099-0.0990.0000.0000.0000.000
33A33ARG10.8160.89730.2150.0740.0740.0000.0000.0000.000
34A34ASN0-0.0030.01331.2750.0120.0120.0000.0000.0000.000
35A35ARG10.9810.96930.4880.0540.0540.0000.0000.0000.000
36A36LEU0-0.0270.00830.884-0.003-0.0030.0000.0000.0000.000
37A37THR0-0.017-0.01427.174-0.011-0.0110.0000.0000.0000.000
38A38ARG10.7670.87223.3690.1450.1450.0000.0000.0000.000
39A39GLU-1-0.756-0.85422.483-0.156-0.1560.0000.0000.0000.000
40A40TRP00.0120.00117.2420.0280.0280.0000.0000.0000.000
41A41PHE0-0.034-0.00816.2470.0170.0170.0000.0000.0000.000
42A42HIS00.0270.03411.3580.1100.1100.0000.0000.0000.000
43A43SER0-0.028-0.0119.6690.1480.1480.0000.0000.0000.000
44A44GLY00.0670.0397.041-0.146-0.1460.0000.0000.0000.000
45A45ARG10.8040.8795.4362.0842.0840.0000.0000.0000.000
46A46ALA00.0390.0368.587-0.352-0.3520.0000.0000.0000.000
47A47LYS10.8110.9155.7771.9641.9640.0000.0000.0000.000
48A48TYR0-0.025-0.03711.442-0.059-0.0590.0000.0000.0000.000
49A49ILE00.0150.01411.9230.0250.0250.0000.0000.0000.000
50A50VAL0-0.0090.00615.890-0.009-0.0090.0000.0000.0000.000
51A51ALA0-0.0030.00519.6190.0310.0310.0000.0000.0000.000
52A52GLY00.0170.00321.678-0.004-0.0040.0000.0000.0000.000
53A53PRO0-0.039-0.01125.4690.0080.0080.0000.0000.0000.000
54A54GLY00.0370.01327.854-0.011-0.0110.0000.0000.0000.000
55A55ALA0-0.009-0.00822.903-0.014-0.0140.0000.0000.0000.000
56A56ASP-1-0.915-0.96823.402-0.192-0.1920.0000.0000.0000.000
57A57GLU-1-0.946-0.97825.080-0.152-0.1520.0000.0000.0000.000
58A58PHE0-0.0180.00021.097-0.004-0.0040.0000.0000.0000.000
59A59GLU-1-0.877-0.94524.555-0.210-0.2100.0000.0000.0000.000
60A60GLY0-0.017-0.00423.4330.0020.0020.0000.0000.0000.000
61A61THR0-0.020-0.00121.5780.0070.0070.0000.0000.0000.000
62A62LEU0-0.037-0.01914.528-0.031-0.0310.0000.0000.0000.000
63A63GLU-1-0.821-0.88017.141-0.429-0.4290.0000.0000.0000.000
64A64LEU0-0.021-0.01110.773-0.122-0.1220.0000.0000.0000.000
65A65GLY0-0.009-0.00514.6790.1110.1110.0000.0000.0000.000
66A66TYR00.0120.00514.811-0.076-0.0760.0000.0000.0000.000
67A67GLN0-0.0230.00017.0780.0640.0640.0000.0000.0000.000
68A68ILE0-0.006-0.00719.496-0.015-0.0150.0000.0000.0000.000
69A69GLY00.0450.02022.0270.0190.0190.0000.0000.0000.000
70A70PHE0-0.005-0.01524.454-0.005-0.0050.0000.0000.0000.000
71A71PRO0-0.0310.00727.2570.0040.0040.0000.0000.0000.000
72A72TRP0-0.002-0.01330.4120.0080.0080.0000.0000.0000.000
73A73SER00.018-0.00132.170-0.009-0.0090.0000.0000.0000.000
74A74LEU0-0.074-0.04034.2500.0080.0080.0000.0000.0000.000
75A75GLY00.0360.02935.754-0.004-0.0040.0000.0000.0000.000
76A76VAL0-0.031-0.02938.5490.0040.0040.0000.0000.0000.000
77A77GLY00.0130.02140.976-0.002-0.0020.0000.0000.0000.000
78A78ILE0-0.014-0.01843.6420.0020.0020.0000.0000.0000.000
79A79ASN00.0010.01246.7710.0010.0010.0000.0000.0000.000
80A80PHE00.0190.01550.3090.0020.0020.0000.0000.0000.000
81A81SER0-0.019-0.02452.942-0.001-0.0010.0000.0000.0000.000
82A82TYR00.0150.00656.4170.0020.0020.0000.0000.0000.000
83A83THR0-0.046-0.02760.146-0.002-0.0020.0000.0000.0000.000
84A84THR00.0090.01263.4100.0010.0010.0000.0000.0000.000
85A85PRO0-0.010-0.00366.7220.0000.0000.0000.0000.0000.000
86A86ASN00.0120.00469.4610.0010.0010.0000.0000.0000.000
87A87ILE0-0.002-0.01271.6620.0000.0000.0000.0000.0000.000
88A88LEU0-0.0110.01371.1820.0000.0000.0000.0000.0000.000
89A89ILE0-0.017-0.01174.9930.0000.0000.0000.0000.0000.000
90A90ASP-1-0.909-0.95874.844-0.026-0.0260.0000.0000.0000.000
91A91ASP-1-0.892-0.93077.368-0.023-0.0230.0000.0000.0000.000
92A92GLY0-0.035-0.00980.4320.0010.0010.0000.0000.0000.000
93A93ASP-1-0.798-0.86482.481-0.018-0.0180.0000.0000.0000.000
94A94ILE00.017-0.00584.0050.0010.0010.0000.0000.0000.000
95A95THR0-0.084-0.06486.8560.0000.0000.0000.0000.0000.000
96A96ARG10.8380.90990.0620.0170.0170.0000.0000.0000.000
97A97PRO00.0100.02289.6020.0000.0000.0000.0000.0000.000
98A98PRO0-0.038-0.01985.6710.0000.0000.0000.0000.0000.000
99A99PHE00.007-0.03185.6400.0000.0000.0000.0000.0000.000
100A100GLY00.0370.03383.3050.0000.0000.0000.0000.0000.000
101A101LEU00.021-0.00280.6650.0000.0000.0000.0000.0000.000
102A102ASN0-0.066-0.03480.7450.0000.0000.0000.0000.0000.000
103A103SER0-0.041-0.03079.0690.0000.0000.0000.0000.0000.000
104A104VAL0-0.0030.00175.9780.0000.0000.0000.0000.0000.000
105A105ILE00.0170.02370.2030.0000.0000.0000.0000.0000.000
106A106THR0-0.008-0.00768.8580.0000.0000.0000.0000.0000.000
107A107PRO0-0.0170.00165.268-0.001-0.0010.0000.0000.0000.000
108A108ASN00.015-0.00760.7570.0020.0020.0000.0000.0000.000
109A109LEU00.0040.00264.3930.0000.0000.0000.0000.0000.000
110A110PHE0-0.014-0.00562.2510.0010.0010.0000.0000.0000.000
111A111PRO0-0.015-0.00658.432-0.001-0.0010.0000.0000.0000.000
112A112GLY00.0140.00656.9070.0010.0010.0000.0000.0000.000
113A113VAL0-0.030-0.02450.339-0.001-0.0010.0000.0000.0000.000
114A114SER0-0.026-0.00151.3210.0000.0000.0000.0000.0000.000
115A115ILE0-0.016-0.02243.586-0.001-0.0010.0000.0000.0000.000
116A116SER0-0.031-0.01945.5680.0030.0030.0000.0000.0000.000
117A117ALA0-0.009-0.02441.268-0.001-0.0010.0000.0000.0000.000
118A118ASP-1-0.857-0.89441.167-0.070-0.0700.0000.0000.0000.000
119A119LEU0-0.010-0.01235.753-0.006-0.0060.0000.0000.0000.000
120A120GLY00.0340.01437.3840.0050.0050.0000.0000.0000.000
121A121ASN0-0.0030.00035.3430.0030.0030.0000.0000.0000.000
122A122GLY00.0310.03731.5120.0020.0020.0000.0000.0000.000
123A123PRO00.0000.00129.5790.0060.0060.0000.0000.0000.000
124A124GLY0-0.0180.00130.286-0.007-0.0070.0000.0000.0000.000
125A125ILE0-0.042-0.02724.015-0.006-0.0060.0000.0000.0000.000
126A126GLN0-0.045-0.02825.1860.0150.0150.0000.0000.0000.000
127A127GLU-1-0.822-0.88820.727-0.472-0.4720.0000.0000.0000.000
128A128VAL0-0.0170.00320.2960.0380.0380.0000.0000.0000.000
129A129ALA00.0350.02119.072-0.059-0.0590.0000.0000.0000.000
130A130THR0-0.030-0.05215.2090.0650.0650.0000.0000.0000.000
131A131PHE0-0.034-0.02112.6730.0350.0350.0000.0000.0000.000
132A132SER0-0.036-0.04718.152-0.040-0.0400.0000.0000.0000.000
133A133VAL0-0.031-0.01518.1480.0400.0400.0000.0000.0000.000
134A134ASP-1-0.843-0.90720.509-0.319-0.3190.0000.0000.0000.000
135A135VAL0-0.095-0.05218.015-0.015-0.0150.0000.0000.0000.000
136A136SER00.000-0.01421.4690.0100.0100.0000.0000.0000.000
137A137GLY00.0150.03421.9190.0020.0020.0000.0000.0000.000
138A138ALA00.0310.02020.142-0.036-0.0360.0000.0000.0000.000
139A139GLU-1-0.977-0.99214.266-0.370-0.3700.0000.0000.0000.000
140A140GLY00.0280.01914.7110.0570.0570.0000.0000.0000.000
141A141GLY00.037-0.00112.868-0.113-0.1130.0000.0000.0000.000
142A142VAL0-0.069-0.00512.9290.0800.0800.0000.0000.0000.000
143A143ALA0-0.014-0.0199.811-0.223-0.2230.0000.0000.0000.000
144A144VAL00.0100.01410.7910.1900.1900.0000.0000.0000.000
145A145SER0-0.040-0.03610.848-0.096-0.0960.0000.0000.0000.000
146A146ASN0-0.028-0.02112.7880.0390.0390.0000.0000.0000.000
147A147ALA00.0700.04415.2330.0600.0600.0000.0000.0000.000
148A148HIS0-0.070-0.05617.275-0.041-0.0410.0000.0000.0000.000
149A149GLY00.0320.02320.058-0.025-0.0250.0000.0000.0000.000
150A150THR0-0.063-0.04721.2890.0240.0240.0000.0000.0000.000
151A151VAL00.0100.01323.952-0.009-0.0090.0000.0000.0000.000
152A152THR0-0.009-0.04026.5330.0120.0120.0000.0000.0000.000
153A153GLY00.0170.02929.869-0.004-0.0040.0000.0000.0000.000
154A154ALA00.0030.01428.5580.0000.0000.0000.0000.0000.000
155A155ALA00.003-0.01430.5470.0080.0080.0000.0000.0000.000
156A156GLY0-0.018-0.01830.134-0.006-0.0060.0000.0000.0000.000
157A157GLY00.0050.00925.9340.0010.0010.0000.0000.0000.000
158A158VAL0-0.006-0.01422.2560.0020.0020.0000.0000.0000.000
159A159LEU0-0.0180.00319.6410.0000.0000.0000.0000.0000.000
160A160LEU00.0420.01816.5660.0100.0100.0000.0000.0000.000
161A161ARG10.8980.95515.7660.4250.4250.0000.0000.0000.000
162A162PRO00.0000.01811.3400.0660.0660.0000.0000.0000.000
163A163PHE00.003-0.00413.525-0.041-0.0410.0000.0000.0000.000
164A164ALA00.0500.02812.266-0.054-0.0540.0000.0000.0000.000
165A165ARG10.7340.83814.2840.5190.5190.0000.0000.0000.000
166A166LEU00.0220.01917.473-0.016-0.0160.0000.0000.0000.000
167A167ILE0-0.009-0.01219.2220.0250.0250.0000.0000.0000.000
168A168ALA00.0520.03223.0520.0030.0030.0000.0000.0000.000
169A169SER0-0.011-0.01924.8420.0110.0110.0000.0000.0000.000
170A170THR0-0.039-0.01627.6130.0200.0200.0000.0000.0000.000
171A171GLY0-0.034-0.01028.3920.0140.0140.0000.0000.0000.000
172A172ASP-1-0.861-0.92525.599-0.250-0.2500.0000.0000.0000.000
173A173SER0-0.017-0.01522.775-0.018-0.0180.0000.0000.0000.000
174A174VAL00.0090.01417.9100.0130.0130.0000.0000.0000.000
175A175THR0-0.002-0.01317.368-0.032-0.0320.0000.0000.0000.000
176A176THR0-0.019-0.01211.9550.0840.0840.0000.0000.0000.000
177A177TYR0-0.006-0.01914.1830.0010.0010.0000.0000.0000.000
178A178GLY00.0190.01611.143-0.090-0.0900.0000.0000.0000.000
179A179GLU-1-0.951-0.98211.623-0.293-0.2930.0000.0000.0000.000
180A180PRO0-0.060-0.03413.054-0.056-0.0560.0000.0000.0000.000
181A181TRP00.0870.0398.7410.1690.1690.0000.0000.0000.000
182A182ASN00.004-0.01615.5070.0210.0210.0000.0000.0000.000
183A183MET0-0.0080.00816.3350.0230.0230.0000.0000.0000.000
184A184ASN0-0.035-0.00720.5910.0460.0460.0000.0000.0000.000