Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: 6G3ZZ

Calculation Name: 1HWG-B-Xray372

Preferred Name: Growth hormone receptor

Target Type: SINGLE PROTEIN

Ligand Name:

ligand 3-letter code:

PDB ID: 1HWG

Chain ID: B

ChEMBL ID: CHEMBL1976

UniProt ID: P10912

Base Structure: X-ray

Registration Date: 2023-09-26

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 191
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2133379.119189
FMO2-HF: Nuclear repulsion 2052598.746794
FMO2-HF: Total energy -80780.372395
FMO2-MP2: Total energy -81013.596979


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(B:32:GLU)


Summations of interaction energy for fragment #1(B:32:GLU)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
55.96760.19917.462-10.313-11.3810.086
Interaction energy analysis for fragmet #1(B:32:GLU)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : -1 / q_Mulliken : -0.835 / q_NPA : -0.925
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3B34LYS10.8100.8843.659-38.610-36.7750.007-0.879-0.9630.003
4B35PHE0-0.008-0.0106.038-2.335-2.3350.0000.0000.0000.000
5B36THR0-0.036-0.0089.742-0.560-0.5600.0000.0000.0000.000
6B37LYS10.8820.92912.387-15.071-15.0710.0000.0000.0000.000
7B38CYS0-0.070-0.03014.6500.4030.4030.0000.0000.0000.000
8B39ARG10.7890.85317.691-12.108-12.1080.0000.0000.0000.000
9B40SER00.0080.00721.456-0.023-0.0230.0000.0000.0000.000
10B41PRO0-0.036-0.00724.801-0.139-0.1390.0000.0000.0000.000
11B42GLU-1-0.711-0.87127.35010.48010.4800.0000.0000.0000.000
12B43ARG10.8690.93628.785-9.522-9.5220.0000.0000.0000.000
13B44GLU-1-0.963-0.98529.5618.8788.8780.0000.0000.0000.000
14B45THR0-0.122-0.08526.5070.1920.1920.0000.0000.0000.000
15B46PHE00.006-0.01019.241-0.058-0.0580.0000.0000.0000.000
16B47SER00.0010.01619.4660.1080.1080.0000.0000.0000.000
17B49HIS00.0390.02114.0570.5040.5040.0000.0000.0000.000
18B50TRP0-0.015-0.0198.536-0.070-0.0700.0000.0000.0000.000
19B51THR0-0.0060.0005.543-1.478-1.4780.0000.0000.0000.000
20B52ASP-1-0.818-0.9066.84231.58131.5810.0000.0000.0000.000
21B53GLU-1-1.017-1.0032.06232.12232.8193.783-1.652-2.828-0.014
22B63PRO0-0.004-0.0158.7071.0591.0590.0000.0000.0000.000
23B64ILE00.0180.0196.4073.4773.4770.0000.0000.0000.000
24B65GLN0-0.090-0.0498.416-2.573-2.5730.0000.0000.0000.000
25B66LEU0-0.0130.00410.1102.3022.3020.0000.0000.0000.000
26B67PHE00.0160.00311.828-2.332-2.3320.0000.0000.0000.000
27B68TYR0-0.030-0.02614.8530.1080.1080.0000.0000.0000.000
28B69THR0-0.027-0.02317.626-0.865-0.8650.0000.0000.0000.000
29B70ARG10.9060.94820.756-11.692-11.6920.0000.0000.0000.000
30B71ARG10.8790.95023.679-11.699-11.6990.0000.0000.0000.000
31B72ASN0-0.041-0.03526.421-0.092-0.0920.0000.0000.0000.000
32B73THR00.000-0.00927.771-0.506-0.5060.0000.0000.0000.000
33B74GLN00.0530.04328.0420.1550.1550.0000.0000.0000.000
34B75GLU-1-0.869-0.92327.13711.75211.7520.0000.0000.0000.000
35B76TRP0-0.019-0.02621.7650.1620.1620.0000.0000.0000.000
36B77THR00.0120.01321.3060.4610.4610.0000.0000.0000.000
37B78GLN00.0010.00119.8941.3351.3350.0000.0000.0000.000
38B79GLU-1-0.891-0.92720.86913.46913.4690.0000.0000.0000.000
39B80TRP0-0.054-0.03415.6300.2080.2080.0000.0000.0000.000
40B81LYS10.8520.92719.509-14.321-14.3210.0000.0000.0000.000
41B82GLU-1-0.771-0.84515.38321.24621.2460.0000.0000.0000.000
42B83CYS0-0.059-0.01715.299-1.264-1.2640.0000.0000.0000.000
43B84PRO0-0.054-0.01218.224-0.308-0.3080.0000.0000.0000.000
44B85ASP-1-0.793-0.87320.69712.87812.8780.0000.0000.0000.000
45B86TYR00.010-0.04513.7710.7410.7410.0000.0000.0000.000
46B87VAL0-0.0100.00717.8400.3850.3850.0000.0000.0000.000
47B88SER0-0.055-0.06820.417-0.341-0.3410.0000.0000.0000.000
48B89ALA0-0.068-0.02719.647-0.488-0.4880.0000.0000.0000.000
49B90GLY00.0100.01219.365-0.018-0.0180.0000.0000.0000.000
50B91GLU-1-0.960-0.97514.12218.00218.0020.0000.0000.0000.000
51B92ASN0-0.041-0.02610.5141.2931.2930.0000.0000.0000.000
52B93SER00.000-0.00112.9630.1790.1790.0000.0000.0000.000
53B95TYR0-0.026-0.02417.390-0.464-0.4640.0000.0000.0000.000
54B96PHE00.007-0.00417.9260.0850.0850.0000.0000.0000.000
55B97ASN00.0760.03023.245-0.531-0.5310.0000.0000.0000.000
56B98SER00.0850.02226.9930.1720.1720.0000.0000.0000.000
57B99SER0-0.0180.00729.389-0.137-0.1370.0000.0000.0000.000
58B100PHE0-0.018-0.01124.1850.0590.0590.0000.0000.0000.000
59B101THR00.0040.04624.9070.6520.6520.0000.0000.0000.000
60B102SER0-0.046-0.02826.612-0.464-0.4640.0000.0000.0000.000
61B103ILE00.0060.00727.1000.4040.4040.0000.0000.0000.000
62B104TRP0-0.019-0.02328.898-0.342-0.3420.0000.0000.0000.000
63B105ILE0-0.0330.00026.334-0.122-0.1220.0000.0000.0000.000
64B106PRO0-0.023-0.01023.4430.3100.3100.0000.0000.0000.000
65B107TYR00.002-0.03720.118-0.321-0.3210.0000.0000.0000.000
66B108CYS0-0.064-0.02914.049-0.222-0.2220.0000.0000.0000.000
67B109ILE0-0.021-0.02113.519-0.455-0.4550.0000.0000.0000.000
68B110LYS10.8950.94111.023-22.767-22.7670.0000.0000.0000.000
69B111LEU00.0070.0206.179-1.793-1.7930.0000.0000.0000.000
70B112THR0-0.005-0.0206.9051.7331.7330.0000.0000.0000.000
71B113SER00.0100.0001.767-31.294-32.19310.352-5.492-3.9610.064
72B114ASN0-0.019-0.0254.728-2.087-1.988-0.001-0.014-0.0840.000
73B115GLY00.0110.0157.623-2.349-2.3490.0000.0000.0000.000
74B116GLY0-0.0110.0046.261-3.433-3.4330.0000.0000.0000.000
75B117THR0-0.037-0.0306.1283.3923.3920.0000.0000.0000.000
76B118VAL00.0110.0182.549-5.133-2.6633.322-2.270-3.5220.033
77B119ASP-1-0.801-0.8884.98528.66128.691-0.001-0.006-0.0230.000
78B120GLU-1-0.916-0.9467.18421.50521.5050.0000.0000.0000.000
79B121LYS10.8830.95411.024-18.132-18.1320.0000.0000.0000.000
80B123PHE00.000-0.00916.9710.3010.3010.0000.0000.0000.000
81B124SER00.0200.01620.7270.0120.0120.0000.0000.0000.000
82B125VAL0-0.012-0.01123.2580.0920.0920.0000.0000.0000.000
83B126ASP-1-0.816-0.91924.62910.82910.8290.0000.0000.0000.000
84B127GLU-1-0.891-0.93122.75512.68312.6830.0000.0000.0000.000
85B128ILE0-0.049-0.01519.4770.1770.1770.0000.0000.0000.000
86B129VAL00.0110.01623.1310.0780.0780.0000.0000.0000.000
87B130GLN0-0.056-0.04323.1230.4230.4230.0000.0000.0000.000
88B131PRO00.0320.02526.2590.1500.1500.0000.0000.0000.000
89B132ASP-1-0.777-0.85928.01510.93910.9390.0000.0000.0000.000
90B133PRO00.0120.00228.834-0.232-0.2320.0000.0000.0000.000
91B134PRO0-0.061-0.02031.771-0.128-0.1280.0000.0000.0000.000
92B135ILE0-0.0010.00034.3860.0450.0450.0000.0000.0000.000
93B136ALA00.018-0.00537.631-0.151-0.1510.0000.0000.0000.000
94B137LEU00.0080.01837.219-0.188-0.1880.0000.0000.0000.000
95B138ASN0-0.048-0.03740.845-0.226-0.2260.0000.0000.0000.000
96B139TRP00.0300.01444.473-0.008-0.0080.0000.0000.0000.000
97B140THR0-0.041-0.02246.999-0.103-0.1030.0000.0000.0000.000
98B141LEU00.0110.01350.8060.0430.0430.0000.0000.0000.000
99B142LEU0-0.058-0.01651.624-0.037-0.0370.0000.0000.0000.000
100B143ASN0-0.044-0.03554.919-0.177-0.1770.0000.0000.0000.000
101B144VAL00.0420.00955.6600.0920.0920.0000.0000.0000.000
102B145SER0-0.0210.01357.780-0.118-0.1180.0000.0000.0000.000
103B146LEU00.0380.00159.6820.0000.0000.0000.0000.0000.000
104B147THR0-0.035-0.02759.674-0.021-0.0210.0000.0000.0000.000
105B148GLY00.0030.00559.516-0.011-0.0110.0000.0000.0000.000
106B149ILE0-0.035-0.01454.9260.0790.0790.0000.0000.0000.000
107B150HIS00.005-0.00153.5150.1740.1740.0000.0000.0000.000
108B151ALA00.0290.00853.008-0.126-0.1260.0000.0000.0000.000
109B152ASP-1-0.812-0.87351.2745.7915.7910.0000.0000.0000.000
110B153ILE00.002-0.00746.050-0.089-0.0890.0000.0000.0000.000
111B154GLN00.0410.02448.3510.0250.0250.0000.0000.0000.000
112B155VAL00.005-0.00442.1450.0180.0180.0000.0000.0000.000
113B156ARG10.8210.89244.488-6.740-6.7400.0000.0000.0000.000
114B157TRP00.0170.01939.2430.0540.0540.0000.0000.0000.000
115B158GLU-1-0.812-0.88240.0236.9306.9300.0000.0000.0000.000
116B159ALA00.0620.03637.7720.1800.1800.0000.0000.0000.000
117B160PRO00.0400.02133.213-0.153-0.1530.0000.0000.0000.000
118B161ARG10.7840.86735.371-7.852-7.8520.0000.0000.0000.000
119B162ASN00.000-0.00230.300-0.381-0.3810.0000.0000.0000.000
120B163ALA00.0470.02034.0310.1360.1360.0000.0000.0000.000
121B164ASP-1-0.770-0.88035.0237.6407.6400.0000.0000.0000.000
122B165ILE0-0.014-0.01537.593-0.045-0.0450.0000.0000.0000.000
123B166GLN0-0.032-0.01639.776-0.125-0.1250.0000.0000.0000.000
124B167LYS10.8270.90239.718-7.979-7.9790.0000.0000.0000.000
125B168GLY0-0.0100.00840.653-0.012-0.0120.0000.0000.0000.000
126B169TRP0-0.0230.00132.630-0.052-0.0520.0000.0000.0000.000
127B170MET0-0.0330.02431.3050.2960.2960.0000.0000.0000.000
128B171VAL0-0.020-0.02335.919-0.299-0.2990.0000.0000.0000.000
129B172LEU00.002-0.00133.8050.1980.1980.0000.0000.0000.000
130B173GLU-1-0.849-0.90835.7968.0208.0200.0000.0000.0000.000
131B174TYR00.014-0.00235.8500.3170.3170.0000.0000.0000.000
132B175GLU-1-0.758-0.82333.3078.8078.8070.0000.0000.0000.000
133B176LEU00.0060.01535.7620.1430.1430.0000.0000.0000.000
134B177GLN0-0.011-0.02732.1040.0010.0010.0000.0000.0000.000
135B178TYR00.016-0.00337.360-0.002-0.0020.0000.0000.0000.000
136B179LYS10.7880.89435.735-7.735-7.7350.0000.0000.0000.000
137B180GLU-1-0.722-0.83240.6336.3606.3600.0000.0000.0000.000
138B181VAL00.0320.01939.6640.1710.1710.0000.0000.0000.000
139B182ASN0-0.012-0.00539.2360.1950.1950.0000.0000.0000.000
140B183GLU-1-0.794-0.85439.4937.0107.0100.0000.0000.0000.000
141B184THR00.016-0.00435.5460.1060.1060.0000.0000.0000.000
142B185LYS10.8350.91134.696-6.956-6.9560.0000.0000.0000.000
143B186TRP00.0520.01532.796-0.212-0.2120.0000.0000.0000.000
144B187LYS10.8060.91636.634-6.881-6.8810.0000.0000.0000.000
145B188MET0-0.007-0.01633.9780.1700.1700.0000.0000.0000.000
146B189MET0-0.037-0.00538.474-0.160-0.1600.0000.0000.0000.000
147B190ASP-1-0.895-0.94038.8507.2047.2040.0000.0000.0000.000
148B191PRO0-0.025-0.02437.125-0.039-0.0390.0000.0000.0000.000
149B192ILE00.0340.03539.305-0.168-0.1680.0000.0000.0000.000
150B193LEU0-0.021-0.02840.4110.1670.1670.0000.0000.0000.000
151B194THR0-0.029-0.01442.211-0.060-0.0600.0000.0000.0000.000
152B195THR00.0100.00141.1340.1100.1100.0000.0000.0000.000
153B196SER0-0.050-0.02543.095-0.100-0.1000.0000.0000.0000.000
154B197VAL00.0100.00443.1520.0050.0050.0000.0000.0000.000
155B198PRO00.0230.03446.1080.0270.0270.0000.0000.0000.000
156B199VAL0-0.015-0.01543.8430.1030.1030.0000.0000.0000.000
157B200TYR00.016-0.00647.238-0.078-0.0780.0000.0000.0000.000
158B201SER0-0.062-0.04348.8180.0560.0560.0000.0000.0000.000
159B202LEU0-0.0130.01646.1170.0670.0670.0000.0000.0000.000
160B203LYS10.9380.96149.243-5.902-5.9020.0000.0000.0000.000
161B204VAL00.0240.00150.3260.0930.0930.0000.0000.0000.000
162B205ASP-1-0.904-0.95351.6345.7985.7980.0000.0000.0000.000
163B206LYS10.7290.86446.625-6.123-6.1230.0000.0000.0000.000
164B207GLU-1-0.846-0.89343.5526.6026.6020.0000.0000.0000.000
165B208TYR0-0.078-0.06743.1420.0800.0800.0000.0000.0000.000
166B209GLU-1-0.803-0.89537.0977.8177.8170.0000.0000.0000.000
167B210VAL0-0.006-0.01739.0870.0170.0170.0000.0000.0000.000
168B211ARG10.9210.97129.634-8.990-8.9900.0000.0000.0000.000
169B212VAL00.0060.00235.372-0.063-0.0630.0000.0000.0000.000
170B213ARG10.8760.92528.413-9.397-9.3970.0000.0000.0000.000
171B214SER00.0450.01432.204-0.272-0.2720.0000.0000.0000.000
172B215LYS10.8840.93731.315-8.637-8.6370.0000.0000.0000.000
173B216GLN00.0170.01830.926-0.316-0.3160.0000.0000.0000.000
174B217ARG10.8770.93032.628-7.619-7.6190.0000.0000.0000.000
175B218ASN0-0.024-0.01133.9490.0460.0460.0000.0000.0000.000
176B219SER00.0190.00328.9760.1660.1660.0000.0000.0000.000
177B220GLY00.0040.01826.347-0.188-0.1880.0000.0000.0000.000
178B221ASN0-0.014-0.01625.5280.0770.0770.0000.0000.0000.000
179B222TYR0-0.027-0.04626.945-0.417-0.4170.0000.0000.0000.000
180B223GLY00.0110.02526.6490.4420.4420.0000.0000.0000.000
181B224GLU-1-0.873-0.93923.60911.72011.7200.0000.0000.0000.000
182B225PHE0-0.071-0.05727.392-0.291-0.2910.0000.0000.0000.000
183B226SER0-0.022-0.01930.4180.1200.1200.0000.0000.0000.000
184B227GLU-1-0.893-0.94332.0589.0249.0240.0000.0000.0000.000
185B228VAL0-0.063-0.01633.580-0.140-0.1400.0000.0000.0000.000
186B229LEU0-0.0070.00536.135-0.132-0.1320.0000.0000.0000.000
187B230TYR0-0.003-0.02936.808-0.011-0.0110.0000.0000.0000.000
188B231VAL0-0.044-0.03041.916-0.101-0.1010.0000.0000.0000.000
189B232THR00.028-0.01145.307-0.018-0.0180.0000.0000.0000.000
190B233LEU0-0.043-0.01048.013-0.051-0.0510.0000.0000.0000.000
191B234PRO0-0.020-0.00150.914-0.081-0.0810.0000.0000.0000.000