FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-07-23

All entries: 44592

Number of unique PDB entries: 7794

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FMODB ID: 6GQ3Z

Calculation Name: 4HW0-A-Xray540

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 4HW0

Chain ID: A

ChEMBL ID:

UniProt ID: Q97V10

Base Structure: X-ray

Registration Date: 2025-07-10

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHSide
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 188
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -695304.614857
FMO2-HF: Nuclear repulsion 655287.457106
FMO2-HF: Total energy -40017.157751
FMO2-MP2: Total energy -40132.808091


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:7:LYS)


Summations of interaction energy for fragment #1(A:7:LYS)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-2.692-1.004-0.009-0.911-0.7670.004
Interaction energy analysis for fragmet #1(A:7:LYS)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.154 / q_NPA : 0.046
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
4A8ARG10.7581.0094.051-3.597-3.1620.004-0.195-0.2440.000
5A9GLY00.050-0.0773.813-1.414-0.161-0.013-0.716-0.5230.004
6A10THR00.073-0.0086.7720.6070.6070.0000.0000.0000.000
7A10THR0-0.0560.07610.754-0.033-0.0330.0000.0000.0000.000
8A11MET00.110-0.0839.9020.1940.1940.0000.0000.0000.000
9A11MET0-0.0410.11611.344-0.025-0.0250.0000.0000.0000.000
10A12GLU00.207-0.0748.3340.0740.0740.0000.0000.0000.000
11A12GLU-1-0.924-0.7596.6750.2650.2650.0000.0000.0000.000
12A13ILE00.107-0.0888.7690.2820.2820.0000.0000.0000.000
13A13ILE0-0.1070.0886.1810.0250.0250.0000.0000.0000.000
14A14MET00.104-0.1029.4490.0750.0750.0000.0000.0000.000
15A14MET0-0.1260.08312.932-0.038-0.0380.0000.0000.0000.000
16A15PHE00.096-0.08212.433-0.023-0.0230.0000.0000.0000.000
17A15PHE0-0.0740.10412.136-0.026-0.0260.0000.0000.0000.000
18A16ASP00.045-0.11011.183-0.103-0.1030.0000.0000.0000.000
19A16ASP-1-0.878-0.7729.3861.7181.7180.0000.0000.0000.000
20A17ILE00.095-0.05512.5640.0180.0180.0000.0000.0000.000
21A17ILE0-0.0780.07012.811-0.013-0.0130.0000.0000.0000.000
22A18LEU00.040-0.12214.861-0.014-0.0140.0000.0000.0000.000
23A18LEU0-0.0550.11516.918-0.010-0.0100.0000.0000.0000.000
24A19ARG00.048-0.09316.386-0.067-0.0670.0000.0000.0000.000
25A19ARG10.7771.01812.329-1.003-1.0030.0000.0000.0000.000
26A20ASN00.048-0.08717.408-0.020-0.0200.0000.0000.0000.000
27A20ASN0-0.1630.04715.055-0.035-0.0350.0000.0000.0000.000
28A21CYS0-0.016-0.12418.647-0.011-0.0110.0000.0000.0000.000
29A21CYS0-0.2160.20919.5840.0060.0060.0000.0000.0000.000
30A22GLU00.229-0.07721.213-0.034-0.0340.0000.0000.0000.000
31A22GLU-1-0.928-0.76822.8140.2120.2120.0000.0000.0000.000
32A23PRO00.012-0.10423.9120.0130.0130.0000.0000.0000.000
33A24LYS00.1340.00625.333-0.010-0.0100.0000.0000.0000.000
34A24LYS10.7740.98026.584-0.172-0.1720.0000.0000.0000.000
35A25CYS00.008-0.11721.4440.0170.0170.0000.0000.0000.000
36A26GLY00.071-0.07622.897-0.028-0.0280.0000.0000.0000.000
37A27ILE00.1260.00119.9070.0410.0410.0000.0000.0000.000
38A27ILE0-0.0540.12618.235-0.005-0.0050.0000.0000.0000.000
39A28THR00.000-0.08018.7820.0610.0610.0000.0000.0000.000
40A28THR0-0.0010.06621.178-0.010-0.0100.0000.0000.0000.000
41A29ARG00.141-0.06218.7110.0690.0690.0000.0000.0000.000
42A29ARG10.7851.03020.377-0.377-0.3770.0000.0000.0000.000
43A30VAL00.111-0.08116.7360.0720.0720.0000.0000.0000.000
44A30VAL0-0.0790.09715.536-0.006-0.0060.0000.0000.0000.000
45A31ILE00.101-0.07314.4820.1120.1120.0000.0000.0000.000
46A31ILE0-0.1300.07014.933-0.023-0.0230.0000.0000.0000.000
47A32TYR00.059-0.11813.7110.1770.1770.0000.0000.0000.000
48A32TYR0-0.1020.10716.328-0.013-0.0130.0000.0000.0000.000
49A33GLY00.016-0.09814.6220.0960.0960.0000.0000.0000.000
50A34ALA00.073-0.02312.1490.1220.1220.0000.0000.0000.000
51A34ALA0-0.0670.11911.553-0.026-0.0260.0000.0000.0000.000
52A35GLY00.058-0.0679.9770.3860.3860.0000.0000.0000.000
53A36ILE0-0.005-0.0338.9360.4840.4840.0000.0000.0000.000
54A36ILE0-0.0900.1028.330-0.032-0.0320.0000.0000.0000.000
55A37ASN00.172-0.02110.588-0.138-0.1380.0000.0000.0000.000
56A37ASN0-0.0560.07510.956-0.094-0.0940.0000.0000.0000.000
57A38TYR00.193-0.08213.0260.0040.0040.0000.0000.0000.000
58A38TYR0-0.0450.10717.5340.0000.0000.0000.0000.0000.000
59A39VAL00.036-0.11415.270-0.027-0.0270.0000.0000.0000.000
60A39VAL0-0.0480.12414.4880.0000.0000.0000.0000.0000.000
61A40VAL00.070-0.11211.192-0.119-0.1190.0000.0000.0000.000
62A40VAL0-0.0870.0989.3570.0030.0030.0000.0000.0000.000
63A41ALA00.135-0.08512.637-0.041-0.0410.0000.0000.0000.000
64A41ALA0-0.0560.10414.5800.0020.0020.0000.0000.0000.000
65A42GLN00.073-0.10314.706-0.032-0.0320.0000.0000.0000.000
66A42GLN0-0.0880.10918.289-0.025-0.0250.0000.0000.0000.000
67A43LYS00.138-0.05915.402-0.032-0.0320.0000.0000.0000.000
68A43LYS10.8641.04912.3650.1140.1140.0000.0000.0000.000
69A44TYR00.005-0.11413.917-0.072-0.0720.0000.0000.0000.000
70A44TYR0-0.1090.07610.0930.0400.0400.0000.0000.0000.000
71A45LEU00.142-0.07615.213-0.026-0.0260.0000.0000.0000.000
72A45LEU0-0.0840.08517.0640.0040.0040.0000.0000.0000.000
73A46ASP00.052-0.10118.243-0.010-0.0100.0000.0000.0000.000
74A46ASP-1-0.907-0.80519.8080.0620.0620.0000.0000.0000.000
75A47GLN00.105-0.06617.793-0.018-0.0180.0000.0000.0000.000
76A47GLN0-0.0980.06915.3870.0090.0090.0000.0000.0000.000
77A48LEU00.072-0.09718.530-0.040-0.0400.0000.0000.0000.000
78A48LEU0-0.0780.09415.9730.0060.0060.0000.0000.0000.000
79A49VAL00.102-0.08019.706-0.007-0.0070.0000.0000.0000.000
80A49VAL0-0.0840.09022.3390.0020.0020.0000.0000.0000.000
81A50LYS00.004-0.11722.424-0.006-0.0060.0000.0000.0000.000
82A50LYS10.7931.00922.262-0.049-0.0490.0000.0000.0000.000
83A51VAL00.024-0.09622.060-0.012-0.0120.0000.0000.0000.000
84A51VAL0-0.1130.08320.194-0.003-0.0030.0000.0000.0000.000
85A52GLY00.070-0.06823.290-0.007-0.0070.0000.0000.0000.000
86A53ALA00.0660.02621.296-0.004-0.0040.0000.0000.0000.000
87A53ALA0-0.0710.08620.7850.0020.0020.0000.0000.0000.000
88A54LEU00.034-0.13322.5010.0170.0170.0000.0000.0000.000
89A54LEU0-0.0510.09319.2970.0070.0070.0000.0000.0000.000
90A55ASN00.134-0.04623.591-0.017-0.0170.0000.0000.0000.000
91A55ASN0-0.0870.07628.028-0.008-0.0080.0000.0000.0000.000
92A56ILE00.082-0.07225.9750.0210.0210.0000.0000.0000.000
93A56ILE0-0.0910.08224.6260.0010.0010.0000.0000.0000.000
94A57LYS00.037-0.12027.023-0.017-0.0170.0000.0000.0000.000
95A57LYS10.8361.02629.820-0.130-0.1300.0000.0000.0000.000
96A58THR0-0.005-0.07428.5980.0160.0160.0000.0000.0000.000
97A58THR0-0.0190.07330.4020.0010.0010.0000.0000.0000.000
98A59GLU00.066-0.08630.777-0.014-0.0140.0000.0000.0000.000
99A59GLU-1-0.897-0.81731.4480.1590.1590.0000.0000.0000.000
100A60ASN00.053-0.04531.4780.0100.0100.0000.0000.0000.000
101A60ASN0-0.1410.02832.610-0.004-0.0040.0000.0000.0000.000
102A61ASP00.125-0.11332.3190.0090.0090.0000.0000.0000.000
103A61ASP-1-0.950-0.81732.6020.1270.1270.0000.0000.0000.000
104A62ARG00.098-0.09228.2700.0020.0020.0000.0000.0000.000
105A62ARG10.8541.05027.431-0.185-0.1850.0000.0000.0000.000
106A63LYS00.095-0.10125.457-0.012-0.0120.0000.0000.0000.000
107A63LYS10.8561.05523.472-0.169-0.1690.0000.0000.0000.000
108A64ILE0-0.005-0.13825.4950.0280.0280.0000.0000.0000.000
109A64ILE0-0.1080.12026.3740.0020.0020.0000.0000.0000.000
110A65TYR00.101-0.08523.013-0.026-0.0260.0000.0000.0000.000
111A65TYR0-0.0600.07421.8980.0060.0060.0000.0000.0000.000
112A66GLU00.070-0.13124.4840.0260.0260.0000.0000.0000.000
113A66GLU-1-0.844-0.75027.3500.1430.1430.0000.0000.0000.000
114A67ILE00.117-0.06023.626-0.019-0.0190.0000.0000.0000.000
115A67ILE0-0.1390.09821.3000.0020.0020.0000.0000.0000.000
116A68THR0-0.011-0.09724.408-0.004-0.0040.0000.0000.0000.000
117A68THR0-0.0680.02825.802-0.001-0.0010.0000.0000.0000.000
118A69GLU00.178-0.08125.7110.0160.0160.0000.0000.0000.000
119A69GLU-1-0.954-0.81729.1920.0990.0990.0000.0000.0000.000
120A70LYS00.042-0.11525.9710.0030.0030.0000.0000.0000.000
121A70LYS10.8001.02824.298-0.025-0.0250.0000.0000.0000.000
122A71GLY00.035-0.09622.032-0.007-0.0070.0000.0000.0000.000
123A72LYS00.101-0.02321.4420.0260.0260.0000.0000.0000.000
124A72LYS10.7911.04224.882-0.175-0.1750.0000.0000.0000.000
125A73LEU00.065-0.08822.6800.0200.0200.0000.0000.0000.000
126A73LEU0-0.0700.12124.767-0.004-0.0040.0000.0000.0000.000
127A74LEU00.093-0.08020.314-0.012-0.0120.0000.0000.0000.000
128A74LEU0-0.1070.08318.110-0.002-0.0020.0000.0000.0000.000
129A75ARG00.094-0.08217.837-0.011-0.0110.0000.0000.0000.000
130A75ARG10.7280.94518.014-0.323-0.3230.0000.0000.0000.000
131A76THR00.019-0.10818.1200.0310.0310.0000.0000.0000.000
132A76THR0-0.0520.07822.2620.0030.0030.0000.0000.0000.000
133A77HIS00.085-0.07519.6060.0060.0060.0000.0000.0000.000
134A77HIS0-0.1070.08119.993-0.001-0.0010.0000.0000.0000.000
135A78ILE00.125-0.06915.277-0.055-0.0550.0000.0000.0000.000
136A78ILE0-0.1170.07213.225-0.003-0.0030.0000.0000.0000.000
137A79GLU00.098-0.09614.901-0.014-0.0140.0000.0000.0000.000
138A79GLU-1-0.880-0.77416.2890.3350.3350.0000.0000.0000.000
139A80GLU00.098-0.09915.8980.0150.0150.0000.0000.0000.000
140A80GLU-1-0.865-0.76619.5400.0530.0530.0000.0000.0000.000
141A81PHE00.061-0.08115.489-0.014-0.0140.0000.0000.0000.000
142A81PHE0-0.1180.04911.247-0.031-0.0310.0000.0000.0000.000
143A82ILE00.069-0.09112.082-0.122-0.1220.0000.0000.0000.000
144A82ILE0-0.0790.08610.5600.0190.0190.0000.0000.0000.000
145A83LYS00.203-0.07612.791-0.022-0.0220.0000.0000.0000.000
146A83LYS10.6810.99316.324-0.067-0.0670.0000.0000.0000.000
147A84ILE00.047-0.11115.238-0.006-0.0060.0000.0000.0000.000
148A84ILE0-0.0940.09416.991-0.005-0.0050.0000.0000.0000.000
149A85ARG00.116-0.08712.300-0.025-0.0250.0000.0000.0000.000
150A85ARG10.6420.9397.3820.1330.1330.0000.0000.0000.000
151A86GLU00.022-0.10912.186-0.124-0.1240.0000.0000.0000.000
152A86GLU-1-0.857-0.8009.7090.0250.0250.0000.0000.0000.000
153A87ASN00.113-0.07313.018-0.020-0.0200.0000.0000.0000.000
154A87ASN0-0.1290.05217.6740.0200.0200.0000.0000.0000.000
155A88LEU00.120-0.07115.7810.0180.0180.0000.0000.0000.000
156A88LEU0-0.1200.08714.811-0.009-0.0090.0000.0000.0000.000
157A89TYR00.012-0.14212.558-0.031-0.0310.0000.0000.0000.000
158A89TYR0-0.0350.1077.575-0.191-0.1910.0000.0000.0000.000
159A90SER00.059-0.06913.913-0.025-0.0250.0000.0000.0000.000
160A90SER0-0.0320.08015.4470.0270.0270.0000.0000.0000.000
161A91ALA00.113-0.07216.5740.0120.0120.0000.0000.0000.000
162A91ALA0-0.0890.09918.9870.0010.0010.0000.0000.0000.000
163A92LYS00.080-0.07616.8990.0220.0220.0000.0000.0000.000
164A92LYS10.8391.04714.9720.5290.5290.0000.0000.0000.000
165A93GLU00.045-0.15517.027-0.018-0.0180.0000.0000.0000.000
166A93GLU-1-0.987-0.82813.770-0.215-0.2150.0000.0000.0000.000
167A94LYS00.079-0.11818.0410.0090.0090.0000.0000.0000.000
168A94LYS10.7360.99220.7150.0860.0860.0000.0000.0000.000
169A95VAL00.099-0.05921.2090.0200.0200.0000.0000.0000.000
170A95VAL0-0.1090.08521.460-0.003-0.0030.0000.0000.0000.000
171A96SER00.104-0.05220.0540.0130.0130.0000.0000.0000.000
172A96SER0-0.0450.05819.434-0.009-0.0090.0000.0000.0000.000
173A97GLU0-0.037-0.18321.473-0.007-0.0070.0000.0000.0000.000
174A97GLU-1-0.840-0.77321.488-0.092-0.0920.0000.0000.0000.000
175A98LEU00.015-0.07623.3590.0130.0130.0000.0000.0000.000
176A98LEU0-0.0720.09826.0360.0020.0020.0000.0000.0000.000
177A99LEU0-0.036-0.07924.8410.0150.0150.0000.0000.0000.000
178A99LEU0-0.1380.05123.226-0.008-0.0080.0000.0000.0000.000
179A100ARG00.162-0.07525.856-0.019-0.0190.0000.0000.0000.000
180A100ARG10.7951.02120.0060.2140.2140.0000.0000.0000.000
181A101THR00.026-0.11527.2700.0060.0060.0000.0000.0000.000
182A101THR0-0.0720.04530.0530.0030.0030.0000.0000.0000.000
183A102ASP00.007-0.09230.327-0.013-0.0130.0000.0000.0000.000
184A102ASP-1-0.965-0.85731.697-0.087-0.0870.0000.0000.0000.000
185A103SER00.059-0.08232.6610.0060.0060.0000.0000.0000.000
186A103SER0-0.0260.07135.7210.0020.0020.0000.0000.0000.000
187A104GLU0-0.161-0.14434.1080.0080.0080.0000.0000.0000.000
188A104GLU-1-0.839-0.90232.938-0.122-0.1220.0000.0000.0000.000