FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-04-23

All entries: 37539

Number of unique PDB entries: 7791

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FMODB ID: 6N2LZ

Calculation Name: 4F15-G-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 4F15

Chain ID: G

ChEMBL ID:

UniProt ID: C5MQE6

Base Structure: X-ray

Registration Date: 2023-09-19

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHSide
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 225
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 22 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2767301.040303
FMO2-HF: Nuclear repulsion 2678016.72961
FMO2-HF: Total energy -89284.310692
FMO2-MP2: Total energy -89545.644048


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(G:43:LYS)


Summations of interaction energy for fragment #1(G:43:LYS)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
8.239.903-0.029-0.712-0.932-0.001
Interaction energy analysis for fragmet #1(G:43:LYS)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.990 / q_NPA : 0.968
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3G45ARG10.9810.9953.80428.33030.003-0.029-0.712-0.932-0.001
4G46GLY00.0070.0046.667-0.210-0.2100.0000.0000.0000.000
5G47VAL00.0410.0158.638-0.459-0.4590.0000.0000.0000.000
6G48ALA00.0160.01410.3540.9850.9850.0000.0000.0000.000
7G49PRO0-0.062-0.03113.2680.1910.1910.0000.0000.0000.000
8G50LEU00.0090.01116.823-0.317-0.3170.0000.0000.0000.000
9G51HIS00.0580.03512.4860.3290.3290.0000.0000.0000.000
10G52LEU0-0.036-0.01817.7020.7990.7990.0000.0000.0000.000
11G53GLY0-0.034-0.02219.908-0.323-0.3230.0000.0000.0000.000
12G54LYN00.0190.05820.962-0.261-0.2610.0000.0000.0000.000
13G55CYS0-0.135-0.09123.363-0.237-0.2370.0000.0000.0000.000
14G56ASN00.1070.07621.591-0.295-0.2950.0000.0000.0000.000
15G57ILE00.024-0.02020.5560.6980.6980.0000.0000.0000.000
16G58ALA0-0.0150.00424.0750.5210.5210.0000.0000.0000.000
17G59GLY00.0610.02226.7590.4780.4780.0000.0000.0000.000
18G60TRP0-0.024-0.03325.1690.3100.3100.0000.0000.0000.000
19G61ILE0-0.0110.00127.2390.3430.3430.0000.0000.0000.000
20G62LEU00.0040.01029.2330.4350.4350.0000.0000.0000.000
21G63GLY0-0.030-0.01530.9810.3790.3790.0000.0000.0000.000
22G64ASN00.004-0.02929.3460.5740.5740.0000.0000.0000.000
23G65PRO00.0430.01530.707-0.222-0.2220.0000.0000.0000.000
24G66GLU-1-0.935-0.94127.786-10.925-10.9250.0000.0000.0000.000
25G68GLU-1-0.899-0.95428.454-9.117-9.1170.0000.0000.0000.000
26G69SER00.001-0.01823.745-0.362-0.3620.0000.0000.0000.000
27G70LEU0-0.037-0.00520.0490.4020.4020.0000.0000.0000.000
28G71SER00.0020.00723.969-0.064-0.0640.0000.0000.0000.000
29G72THR00.0430.00425.823-0.035-0.0350.0000.0000.0000.000
30G73ALA0-0.0070.00528.3920.2480.2480.0000.0000.0000.000
31G74SER0-0.072-0.03024.582-0.068-0.0680.0000.0000.0000.000
32G75SER0-0.010-0.03324.9040.2380.2380.0000.0000.0000.000
33G76TRP0-0.059-0.03419.620-0.038-0.0380.0000.0000.0000.000
34G77SER00.0000.00015.7060.0110.0110.0000.0000.0000.000
35G78TYR0-0.020-0.02810.7550.0450.0450.0000.0000.0000.000
36G79ILE00.0020.00917.040-0.150-0.1500.0000.0000.0000.000
37G80VAL00.0000.00313.072-1.295-1.2950.0000.0000.0000.000
38G81GLU-1-0.818-0.87915.882-13.906-13.9060.0000.0000.0000.000
39G82THR00.0240.01916.698-0.938-0.9380.0000.0000.0000.000
40G83SER00.052-0.00317.6190.1940.1940.0000.0000.0000.000
41G84SER00.0250.01319.6190.4380.4380.0000.0000.0000.000
42G85SER0-0.0100.00722.6580.4080.4080.0000.0000.0000.000
43G86ASP-1-0.928-0.95122.459-13.406-13.4060.0000.0000.0000.000
44G87ASN0-0.044-0.05125.3830.2970.2970.0000.0000.0000.000
45G88GLY00.0250.02526.5680.3840.3840.0000.0000.0000.000
46G89THR0-0.062-0.02727.6230.0620.0620.0000.0000.0000.000
47G90CYS0-0.077-0.01631.094-0.112-0.1120.0000.0000.0000.000
48G91TYR00.007-0.01733.2090.1140.1140.0000.0000.0000.000
49G92PRO00.0110.00634.558-0.144-0.1440.0000.0000.0000.000
50G93GLY0-0.023-0.02534.4190.3300.3300.0000.0000.0000.000
51G94ASP-1-0.885-0.91832.438-9.909-9.9090.0000.0000.0000.000
52G95PHE0-0.011-0.02329.6850.2420.2420.0000.0000.0000.000
53G96ILE0-0.064-0.02831.133-0.155-0.1550.0000.0000.0000.000
54G97ASP-1-0.804-0.92930.170-9.407-9.4070.0000.0000.0000.000
55G98TYR0-0.0150.00922.617-0.026-0.0260.0000.0000.0000.000
56G99GLU-1-0.823-0.93621.493-14.303-14.3030.0000.0000.0000.000
57G100GLU-1-0.912-0.95024.020-10.262-10.2620.0000.0000.0000.000
58G101LEU0-0.059-0.02326.405-0.012-0.0120.0000.0000.0000.000
59G102ARG10.8200.88418.03115.23415.2340.0000.0000.0000.000
60G103GLU-1-0.928-0.95419.991-14.447-14.4470.0000.0000.0000.000
61G104GLN0-0.0560.01022.101-0.175-0.1750.0000.0000.0000.000
62G105LEU0-0.025-0.01923.6770.2520.2520.0000.0000.0000.000
63G106SER0-0.021-0.03319.094-0.407-0.4070.0000.0000.0000.000
64G107SER0-0.007-0.03120.611-0.092-0.0920.0000.0000.0000.000
65G108VAL0-0.0310.00122.0740.3270.3270.0000.0000.0000.000
66G109SER00.0280.01524.429-0.206-0.2060.0000.0000.0000.000
67G110SER0-0.0160.00426.9620.1900.1900.0000.0000.0000.000
68G111PHE00.012-0.00127.829-0.016-0.0160.0000.0000.0000.000
69G112GLU-1-0.875-0.91929.979-8.081-8.0810.0000.0000.0000.000
70G113ARG10.9440.98633.1088.9478.9470.0000.0000.0000.000
71G114PHE00.0320.02434.8930.1570.1570.0000.0000.0000.000
72G115GLU-1-0.791-0.90138.486-7.335-7.3350.0000.0000.0000.000
73G116ILE0-0.0610.00140.3280.1770.1770.0000.0000.0000.000
74G117PHE0-0.020-0.02842.3020.2240.2240.0000.0000.0000.000
75G118PRO00.0400.02043.920-0.123-0.1230.0000.0000.0000.000
76G119LYS10.9170.95544.1826.8456.8450.0000.0000.0000.000
77G120THR00.0060.00446.8600.0930.0930.0000.0000.0000.000
78G121SER00.0360.01250.0720.0190.0190.0000.0000.0000.000
79G122SER0-0.039-0.02248.3880.0250.0250.0000.0000.0000.000
80G123TRP00.043-0.00445.9970.0710.0710.0000.0000.0000.000
81G124PRO00.0360.02252.2770.0190.0190.0000.0000.0000.000
82G125ASN0-0.039-0.03055.7290.0360.0360.0000.0000.0000.000
83G126HIS00.0070.01252.2690.0880.0880.0000.0000.0000.000
84G127ASP-1-0.870-0.94152.088-6.081-6.0810.0000.0000.0000.000
85G128SER0-0.0120.00549.416-0.102-0.1020.0000.0000.0000.000
86G129ASN0-0.015-0.02747.029-0.198-0.1980.0000.0000.0000.000
87G130LYS10.9800.98948.2116.1486.1480.0000.0000.0000.000
88G131GLY0-0.006-0.00544.396-0.044-0.0440.0000.0000.0000.000
89G132VAL0-0.054-0.01442.332-0.163-0.1630.0000.0000.0000.000
90G133THR00.023-0.01039.5330.1410.1410.0000.0000.0000.000
91G134ALA00.0340.00040.310-0.102-0.1020.0000.0000.0000.000
92G135ALA00.0010.00537.327-0.144-0.1440.0000.0000.0000.000
93G137PRO00.0570.04135.3260.2110.2110.0000.0000.0000.000
94G138HIS00.030-0.00734.980-0.273-0.2730.0000.0000.0000.000
95G139ALA00.0220.02636.4790.1140.1140.0000.0000.0000.000
96G140GLY0-0.014-0.00638.1410.1470.1470.0000.0000.0000.000
97G141ALA0-0.027-0.01941.222-0.059-0.0590.0000.0000.0000.000
98G142LYS10.8930.95940.8156.8466.8460.0000.0000.0000.000
99G143SER00.0720.04738.2830.2620.2620.0000.0000.0000.000
100G144PHE00.0430.01538.6920.0660.0660.0000.0000.0000.000
101G145TYR0-0.007-0.00932.827-0.228-0.2280.0000.0000.0000.000
102G146LYS10.8510.92434.2579.0609.0600.0000.0000.0000.000
103G147ASN0-0.045-0.03532.6470.3750.3750.0000.0000.0000.000
104G148LEU00.0320.03235.6090.1410.1410.0000.0000.0000.000
105G149ILE0-0.031-0.01039.3150.0190.0190.0000.0000.0000.000
106G150TRP0-0.029-0.01641.506-0.039-0.0390.0000.0000.0000.000
107G151LEU0-0.0220.00544.0620.1180.1180.0000.0000.0000.000
108G152VAL0-0.015-0.01847.501-0.026-0.0260.0000.0000.0000.000
109G153LYN00.0190.01750.4470.0860.0860.0000.0000.0000.000
110G154LYS10.8660.94954.2205.4545.4540.0000.0000.0000.000
111G155GLY0-0.042-0.01356.3110.0840.0840.0000.0000.0000.000
112G156ASN0-0.010-0.01158.5850.0270.0270.0000.0000.0000.000
113G157SER00.0240.00558.7510.1010.1010.0000.0000.0000.000
114G158TYR0-0.0220.01048.654-0.057-0.0570.0000.0000.0000.000
115G159PRO0-0.014-0.00155.717-0.024-0.0240.0000.0000.0000.000
116G160LYS10.9090.95254.5655.6445.6440.0000.0000.0000.000
117G161LEU0-0.0180.00048.6710.0500.0500.0000.0000.0000.000
118G162SER00.0480.01251.123-0.100-0.1000.0000.0000.0000.000
119G163LYS10.8770.95447.7126.2886.2880.0000.0000.0000.000
120G164SER0-0.002-0.00647.480-0.120-0.1200.0000.0000.0000.000
121G165TYR00.0420.02541.3990.0260.0260.0000.0000.0000.000
122G166ILE0-0.001-0.00544.890-0.073-0.0730.0000.0000.0000.000
123G167ASN0-0.003-0.02139.1040.0070.0070.0000.0000.0000.000
124G168ASP-1-0.916-0.95943.326-6.674-6.6740.0000.0000.0000.000
125G169LYS10.7700.89138.1347.8697.8690.0000.0000.0000.000
126G170GLY00.0430.02339.3940.1020.1020.0000.0000.0000.000
127G171LYS10.7670.86632.5468.8228.8220.0000.0000.0000.000
128G172GLU-1-0.751-0.89430.754-9.647-9.6470.0000.0000.0000.000
129G173VAL0-0.053-0.03834.080-0.178-0.1780.0000.0000.0000.000
130G174LEU0-0.0120.02430.0850.0830.0830.0000.0000.0000.000
131G175VAL0-0.049-0.04434.2020.1010.1010.0000.0000.0000.000
132G176LEU00.0530.01931.050-0.063-0.0630.0000.0000.0000.000
133G177TRP0-0.025-0.01035.6580.1660.1660.0000.0000.0000.000
134G178GLY00.0700.04238.058-0.194-0.1940.0000.0000.0000.000
135G179ILE0-0.035-0.03039.2950.2190.2190.0000.0000.0000.000
136G180HIS00.0240.00441.328-0.012-0.0120.0000.0000.0000.000
137G181HIS0-0.047-0.01440.5920.2580.2580.0000.0000.0000.000
138G182PRO0-0.017-0.00344.124-0.118-0.1180.0000.0000.0000.000
139G183SER00.0260.01245.963-0.097-0.0970.0000.0000.0000.000
140G184THR0-0.014-0.03547.1780.1000.1000.0000.0000.0000.000
141G185SER00.0310.00750.9380.0120.0120.0000.0000.0000.000
142G186ALA00.0620.04053.1580.0270.0270.0000.0000.0000.000
143G187ASP-1-0.760-0.88049.385-6.375-6.3750.0000.0000.0000.000
144G188GLN00.0510.01950.166-0.208-0.2080.0000.0000.0000.000
145G189GLN0-0.020-0.00151.5680.0250.0250.0000.0000.0000.000
146G190SER0-0.058-0.03953.9770.0890.0890.0000.0000.0000.000
147G191LEU0-0.038-0.01948.142-0.018-0.0180.0000.0000.0000.000
148G192TYR0-0.029-0.06145.9790.0220.0220.0000.0000.0000.000
149G193GLN00.0070.02952.441-0.001-0.0010.0000.0000.0000.000
150G194ASN0-0.062-0.03254.9460.2090.2090.0000.0000.0000.000
151G195ALA00.0180.00654.695-0.118-0.1180.0000.0000.0000.000
152G196ASP-1-0.951-0.95454.704-5.691-5.6910.0000.0000.0000.000
153G197ALA00.0300.01151.3050.0310.0310.0000.0000.0000.000
154G198TYR0-0.116-0.06849.377-0.047-0.0470.0000.0000.0000.000
155G199VAL00.015-0.00145.0740.0440.0440.0000.0000.0000.000
156G200PHE0-0.017-0.02046.4790.0450.0450.0000.0000.0000.000
157G201VAL00.0240.01541.241-0.108-0.1080.0000.0000.0000.000
158G202GLY0-0.041-0.02243.7560.1790.1790.0000.0000.0000.000
159G203SER0-0.0010.01542.388-0.229-0.2290.0000.0000.0000.000
160G204SER0-0.020-0.02842.7510.1570.1570.0000.0000.0000.000
161G205ARG10.9090.94338.1587.4797.4790.0000.0000.0000.000
162G206TYR00.0930.03936.415-0.098-0.0980.0000.0000.0000.000
163G207SER00.0100.02441.0890.1960.1960.0000.0000.0000.000
164G208LYS10.9270.97236.4068.3668.3660.0000.0000.0000.000
165G209LYS10.9220.95243.5476.6646.6640.0000.0000.0000.000
166G210PHE00.0280.02240.886-0.078-0.0780.0000.0000.0000.000
167G211LYS10.8940.94346.0566.4436.4430.0000.0000.0000.000
168G212PRO00.0130.02445.323-0.016-0.0160.0000.0000.0000.000
169G213GLU-1-0.868-0.93446.010-6.732-6.7320.0000.0000.0000.000
170G214ILE0-0.0190.00046.167-0.196-0.1960.0000.0000.0000.000
171G215ALA00.0200.01245.3220.1040.1040.0000.0000.0000.000
172G216ILE00.0180.00845.334-0.122-0.1220.0000.0000.0000.000
173G217ARG10.8060.91140.4727.3287.3280.0000.0000.0000.000
174G218PRO00.0690.02237.9370.0440.0440.0000.0000.0000.000
175G219LYS10.8130.92739.1047.0547.0540.0000.0000.0000.000
176G220VAL00.0070.01033.340-0.107-0.1070.0000.0000.0000.000
177G221ARG10.8250.92030.17510.01610.0160.0000.0000.0000.000
178G222ASP-1-0.859-0.95336.915-7.239-7.2390.0000.0000.0000.000
179G223GLN00.0340.01539.0520.2410.2410.0000.0000.0000.000
180G224GLU-1-0.795-0.88840.299-7.231-7.2310.0000.0000.0000.000
181G225GLY00.0000.03242.8170.0790.0790.0000.0000.0000.000
182G226ARG10.8250.89636.5058.2378.2370.0000.0000.0000.000
183G227MET0-0.048-0.01638.0170.3080.3080.0000.0000.0000.000
184G228ASN00.0450.03736.184-0.243-0.2430.0000.0000.0000.000
185G229TYR00.0240.00733.6410.3060.3060.0000.0000.0000.000
186G230TYR0-0.014-0.02234.652-0.210-0.2100.0000.0000.0000.000
187G231TRP00.0260.00829.3170.2580.2580.0000.0000.0000.000
188G232THR00.002-0.00233.9760.0630.0630.0000.0000.0000.000
189G233LEU00.0450.03031.282-0.009-0.0090.0000.0000.0000.000
190G234VAL0-0.079-0.03635.3720.2120.2120.0000.0000.0000.000
191G235GLU-1-0.850-0.93835.805-8.603-8.6030.0000.0000.0000.000
192G236PRO0-0.023-0.03537.9000.2160.2160.0000.0000.0000.000
193G237GLY00.0070.03340.8490.1170.1170.0000.0000.0000.000
194G238ASP-1-0.827-0.88342.257-6.872-6.8720.0000.0000.0000.000
195G239LYS10.9240.95444.0416.3316.3310.0000.0000.0000.000
196G240ILE0-0.0230.00640.1780.0490.0490.0000.0000.0000.000
197G241THR0-0.060-0.04444.0430.0340.0340.0000.0000.0000.000
198G242PHE00.0560.01741.122-0.133-0.1330.0000.0000.0000.000
199G243GLU-1-0.796-0.91147.146-5.779-5.7790.0000.0000.0000.000
200G244ALA0-0.058-0.01648.491-0.124-0.1240.0000.0000.0000.000
201G245THR0-0.0110.00950.5370.0510.0510.0000.0000.0000.000
202G246GLY00.0520.02650.8280.0930.0930.0000.0000.0000.000
203G247ASN0-0.030-0.04846.3290.0330.0330.0000.0000.0000.000
204G248LEU00.0280.03543.967-0.196-0.1960.0000.0000.0000.000
205G249VAL0-0.046-0.01740.2580.0790.0790.0000.0000.0000.000
206G250VAL00.001-0.00342.213-0.087-0.0870.0000.0000.0000.000
207G251PRO00.0620.03039.843-0.143-0.1430.0000.0000.0000.000
208G252ARG10.7630.88340.0117.6347.6340.0000.0000.0000.000
209G253TYR0-0.063-0.05236.5880.0540.0540.0000.0000.0000.000
210G254ALA0-0.019-0.00436.406-0.093-0.0930.0000.0000.0000.000
211G255PHE00.017-0.01230.940-0.074-0.0740.0000.0000.0000.000
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