FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: 6N4RZ

Calculation Name: 5HUS-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 5HUS

Chain ID: A

ChEMBL ID:

UniProt ID: A0A1D8

Base Structure: X-ray

Registration Date: 2023-06-22

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 293
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -4189272.936211
FMO2-HF: Nuclear repulsion 4074774.566201
FMO2-HF: Total energy -114498.37001
FMO2-MP2: Total energy -114833.822561


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:GLY)


Summations of interaction energy for fragment #1(A:1:GLY)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-11.439-5.1043.434-4.55-5.218-0.019
Interaction energy analysis for fragmet #1(A:1:GLY)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.015 / q_NPA : 0.003
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3LEU0-0.0220.0073.269-2.990-0.1570.070-1.441-1.4630.006
4A4VAL00.0170.0165.260-1.051-1.056-0.001-0.0060.0130.000
5A5PRO00.027-0.0047.1680.2560.2560.0000.0000.0000.000
6A6PHE00.0110.0158.530-0.110-0.1100.0000.0000.0000.000
7A7THR00.0270.00611.336-0.103-0.1030.0000.0000.0000.000
8A8LYS11.0050.98214.403-0.130-0.1300.0000.0000.0000.000
9A9ASN00.0090.00817.839-0.011-0.0110.0000.0000.0000.000
10A10ALA00.0610.04815.160-0.006-0.0060.0000.0000.0000.000
11A11PHE00.0180.00617.1210.0010.0010.0000.0000.0000.000
12A12LYS10.8810.92118.635-0.163-0.1630.0000.0000.0000.000
13A13ASP-1-0.888-0.93820.0080.1850.1850.0000.0000.0000.000
14A14TRP0-0.096-0.04619.171-0.013-0.0130.0000.0000.0000.000
15A15CYS0-0.056-0.03221.259-0.016-0.0160.0000.0000.0000.000
16A16SER0-0.0490.01024.172-0.021-0.0210.0000.0000.0000.000
17A17VAL0-0.040-0.02425.635-0.001-0.0010.0000.0000.0000.000
18A18ASN0-0.052-0.03228.347-0.006-0.0060.0000.0000.0000.000
19A19GLY00.0610.03031.397-0.002-0.0020.0000.0000.0000.000
20A20LYS10.8600.94629.892-0.090-0.0900.0000.0000.0000.000
21A21ARG10.9460.97524.652-0.127-0.1270.0000.0000.0000.000
22A22LEU0-0.0080.00923.799-0.009-0.0090.0000.0000.0000.000
23A23ILE00.000-0.00719.5520.0240.0240.0000.0000.0000.000
24A24ILE0-0.009-0.00119.683-0.022-0.0220.0000.0000.0000.000
25A25LEU0-0.010-0.01817.1780.0370.0370.0000.0000.0000.000
26A26ALA00.0280.02215.868-0.034-0.0340.0000.0000.0000.000
27A27LEU0-0.023-0.01915.7190.0150.0150.0000.0000.0000.000
28A28GLU-1-0.917-0.96217.1020.0620.0620.0000.0000.0000.000
29A29ILE00.002-0.00319.294-0.003-0.0030.0000.0000.0000.000
30A30SER00.014-0.00722.586-0.009-0.0090.0000.0000.0000.000
31A31SER00.023-0.00224.8000.0030.0030.0000.0000.0000.000
32A32ALA0-0.059-0.01625.831-0.004-0.0040.0000.0000.0000.000
33A33VAL00.0150.01526.1970.0030.0030.0000.0000.0000.000
34A47LYS10.9350.96415.346-0.052-0.0520.0000.0000.0000.000
35A48VAL00.0330.00313.936-0.002-0.0020.0000.0000.0000.000
36A49ASN0-0.017-0.00510.9320.0130.0130.0000.0000.0000.000
37A50VAL0-0.022-0.01015.1620.0120.0120.0000.0000.0000.000
38A51ILE0-0.0080.00918.682-0.002-0.0020.0000.0000.0000.000
39A52ASP-1-0.756-0.87221.2950.0610.0610.0000.0000.0000.000
40A53PRO00.020-0.00624.7700.0070.0070.0000.0000.0000.000
41A54SER0-0.054-0.02626.8230.0030.0030.0000.0000.0000.000
42A55GLY0-0.029-0.02024.9610.0010.0010.0000.0000.0000.000
43A56LEU00.0150.01021.0940.0060.0060.0000.0000.0000.000
44A57VAL00.005-0.00423.7860.0070.0070.0000.0000.0000.000
45A58ARG10.9390.97826.179-0.062-0.0620.0000.0000.0000.000
46A59LEU0-0.064-0.04220.933-0.001-0.0010.0000.0000.0000.000
47A60LEU0-0.046-0.00720.6630.0140.0140.0000.0000.0000.000
48A61SER00.0170.00624.6190.0000.0000.0000.0000.0000.000
49A62ASP-1-0.811-0.90226.9110.0870.0870.0000.0000.0000.000
50A63LEU0-0.067-0.03822.2110.0020.0020.0000.0000.0000.000
51A64VAL0-0.056-0.00126.2050.0000.0000.0000.0000.0000.000
52A65GLU-1-0.963-0.97228.3290.0710.0710.0000.0000.0000.000
53A66SER0-0.106-0.07528.434-0.003-0.0030.0000.0000.0000.000
54A67GLN0-0.004-0.02231.0330.0000.0000.0000.0000.0000.000
55A68ASP-1-0.916-0.94230.2440.1090.1090.0000.0000.0000.000
56A69THR0-0.017-0.00525.5150.0150.0150.0000.0000.0000.000
57A70PHE00.009-0.00127.001-0.010-0.0100.0000.0000.0000.000
58A71VAL00.0310.01422.6920.0140.0140.0000.0000.0000.000
59A72TYR0-0.031-0.05723.613-0.019-0.0190.0000.0000.0000.000
60A73LEU0-0.0210.00221.1020.0170.0170.0000.0000.0000.000
61A74LEU0-0.036-0.01419.071-0.011-0.0110.0000.0000.0000.000
62A75SER00.0450.01420.5700.0030.0030.0000.0000.0000.000
63A76TYR00.0410.00318.353-0.007-0.0070.0000.0000.0000.000
64A77LEU00.0150.01423.748-0.007-0.0070.0000.0000.0000.000
65A78GLN00.0980.05026.6750.0050.0050.0000.0000.0000.000
66A79ARG10.8600.91530.238-0.049-0.0490.0000.0000.0000.000
67A80SER00.0270.01632.2980.0020.0020.0000.0000.0000.000
68A81ASP-1-0.837-0.91930.0050.0400.0400.0000.0000.0000.000
69A82LEU0-0.018-0.01726.1390.0020.0020.0000.0000.0000.000
70A83ASP-1-0.787-0.88830.1660.0570.0570.0000.0000.0000.000
71A84ILE0-0.071-0.03633.479-0.001-0.0010.0000.0000.0000.000
72A85MET0-0.089-0.03326.4510.0010.0010.0000.0000.0000.000
73A86PHE00.0410.00625.3450.0010.0010.0000.0000.0000.000
74A87LYS10.9651.00531.421-0.038-0.0380.0000.0000.0000.000
75A88ARG10.8690.92534.443-0.043-0.0430.0000.0000.0000.000
76A89TYR0-0.036-0.01930.656-0.002-0.0020.0000.0000.0000.000
77A90PRO00.0250.02131.5470.0040.0040.0000.0000.0000.000
78A91GLN00.0610.01530.4240.0000.0000.0000.0000.0000.000
79A92ILE0-0.0060.01225.5650.0070.0070.0000.0000.0000.000
80A93GLY00.0290.01527.767-0.007-0.0070.0000.0000.0000.000
81A94LEU0-0.036-0.02026.7540.0060.0060.0000.0000.0000.000
82A95ILE00.0050.01223.835-0.004-0.0040.0000.0000.0000.000
83A96ALA00.0140.00125.4290.0030.0030.0000.0000.0000.000
84A97GLU-1-0.756-0.87626.4040.0540.0540.0000.0000.0000.000
85A98ASN0-0.061-0.05421.0680.0120.0120.0000.0000.0000.000
86A99GLY00.045-0.00523.9210.0090.0090.0000.0000.0000.000
87A100ASN0-0.022-0.01026.288-0.005-0.0050.0000.0000.0000.000
88A101PHE0-0.003-0.00329.287-0.005-0.0050.0000.0000.0000.000
89A102VAL00.0410.02528.5310.0060.0060.0000.0000.0000.000
90A103LYS10.8350.92230.441-0.067-0.0670.0000.0000.0000.000
91A104LEU00.0460.01631.0780.0040.0040.0000.0000.0000.000
92A105ILE00.0590.03128.673-0.006-0.0060.0000.0000.0000.000
93A106GLY0-0.0180.00432.667-0.002-0.0020.0000.0000.0000.000
94A107ALA0-0.060-0.01635.408-0.005-0.0050.0000.0000.0000.000
95A108LYS10.9360.95136.713-0.047-0.0470.0000.0000.0000.000
96A109ASN0-0.045-0.02438.518-0.003-0.0030.0000.0000.0000.000
97A110TRP0-0.026-0.03129.9750.0030.0030.0000.0000.0000.000
98A111ILE0-0.016-0.00833.832-0.005-0.0050.0000.0000.0000.000
99A112SER0-0.055-0.05333.7190.0030.0030.0000.0000.0000.000
100A113LEU0-0.0040.01129.091-0.002-0.0020.0000.0000.0000.000
101A114ALA00.0280.01932.463-0.001-0.0010.0000.0000.0000.000
102A115ASP-1-0.772-0.87133.8130.0420.0420.0000.0000.0000.000
103A116LYS10.9450.95837.313-0.036-0.0360.0000.0000.0000.000
104A117ASP-1-0.878-0.92939.5240.0310.0310.0000.0000.0000.000
105A118GLU-1-0.915-0.96835.4270.0470.0470.0000.0000.0000.000
106A119LEU0-0.075-0.03433.983-0.002-0.0020.0000.0000.0000.000
107A120ASN0-0.037-0.04137.595-0.002-0.0020.0000.0000.0000.000
108A121SER0-0.0290.00040.653-0.003-0.0030.0000.0000.0000.000
109A122TRP0-0.010-0.01235.028-0.001-0.0010.0000.0000.0000.000
110A123MET0-0.0210.00933.184-0.001-0.0010.0000.0000.0000.000
111A124PRO00.0020.00536.777-0.002-0.0020.0000.0000.0000.000
112A125GLU-1-0.919-0.95838.8170.0140.0140.0000.0000.0000.000
113A126ILE0-0.020-0.00932.431-0.002-0.0020.0000.0000.0000.000
114A127VAL00.011-0.00335.154-0.002-0.0020.0000.0000.0000.000
115A128LYS10.9971.01136.293-0.012-0.0120.0000.0000.0000.000
116A129LEU0-0.043-0.00933.989-0.003-0.0030.0000.0000.0000.000
117A130VAL00.0290.00631.878-0.003-0.0030.0000.0000.0000.000
118A131GLU-1-0.924-0.97334.3870.0080.0080.0000.0000.0000.000
119A132SER0-0.064-0.03737.067-0.003-0.0030.0000.0000.0000.000
120A133LYS10.7750.87333.3630.0000.0000.0000.0000.0000.000
121A134VAL0-0.030-0.00833.442-0.003-0.0030.0000.0000.0000.000
122A135GLU-1-0.942-0.96435.424-0.002-0.0020.0000.0000.0000.000
123A136ARG10.8830.94937.3500.0060.0060.0000.0000.0000.000
124A137LEU0-0.038-0.01230.440-0.003-0.0030.0000.0000.0000.000
125A138PRO00.0670.04934.3950.0010.0010.0000.0000.0000.000
126A139GLY0-0.015-0.01933.099-0.003-0.0030.0000.0000.0000.000
127A140SER0-0.050-0.02630.8840.0010.0010.0000.0000.0000.000
128A141PHE00.013-0.01128.3700.0010.0010.0000.0000.0000.000
129A142CYS0-0.0070.00230.8410.0010.0010.0000.0000.0000.000
130A143GLU-1-0.884-0.92727.5470.0300.0300.0000.0000.0000.000
131A144ALA00.012-0.00130.8150.0020.0020.0000.0000.0000.000
132A145LEU0-0.061-0.01028.2050.0000.0000.0000.0000.0000.000
133A146ASP-1-0.850-0.92032.3860.0390.0390.0000.0000.0000.000
134A147ALA0-0.069-0.05731.243-0.001-0.0010.0000.0000.0000.000
135A148THR0-0.057-0.03726.7110.0030.0030.0000.0000.0000.000
136A149VAL00.0330.02029.131-0.003-0.0030.0000.0000.0000.000
137A150ARG10.8930.95621.000-0.040-0.0400.0000.0000.0000.000
138A151PHE00.0020.00527.415-0.003-0.0030.0000.0000.0000.000
139A152HIS0-0.041-0.03625.101-0.008-0.0080.0000.0000.0000.000
140A153ALA00.0700.02725.615-0.001-0.0010.0000.0000.0000.000
141A154GLY00.0260.02226.873-0.001-0.0010.0000.0000.0000.000
142A155LYS10.9120.95227.6810.0190.0190.0000.0000.0000.000
143A156SER00.005-0.01229.599-0.005-0.0050.0000.0000.0000.000
144A157PHE00.014-0.00421.440-0.004-0.0040.0000.0000.0000.000
145A158SER0-0.044-0.02926.842-0.005-0.0050.0000.0000.0000.000
146A159GLU-1-0.983-0.99128.262-0.034-0.0340.0000.0000.0000.000
147A160ASP-1-0.863-0.93730.290-0.047-0.0470.0000.0000.0000.000
148A161ARG10.9360.97922.4060.0890.0890.0000.0000.0000.000
149A162GLU-1-0.898-0.95025.847-0.075-0.0750.0000.0000.0000.000
150A163ARG10.9861.01227.9910.0280.0280.0000.0000.0000.000
151A164SER0-0.048-0.02227.1650.0040.0040.0000.0000.0000.000
152A165LEU0-0.002-0.02422.1110.0040.0040.0000.0000.0000.000
153A166ASP-1-0.878-0.92126.010-0.039-0.0390.0000.0000.0000.000
154A167THR0-0.043-0.02328.8780.0060.0060.0000.0000.0000.000
155A168MET0-0.068-0.01423.8670.0070.0070.0000.0000.0000.000
156A169GLY00.0220.01126.3230.0050.0050.0000.0000.0000.000
157A170GLU-1-0.862-0.92327.100-0.002-0.0020.0000.0000.0000.000
158A171THR00.007-0.01629.5910.0050.0050.0000.0000.0000.000
159A172ILE0-0.027-0.01123.9990.0050.0050.0000.0000.0000.000
160A173GLN00.0040.01628.3010.0020.0020.0000.0000.0000.000
161A174HIS00.0040.01630.4500.0020.0020.0000.0000.0000.000
162A175ILE00.021-0.00630.0290.0020.0020.0000.0000.0000.000
163A176ASN00.0370.01726.4870.0070.0070.0000.0000.0000.000
164A177THR0-0.046-0.03430.9420.0020.0020.0000.0000.0000.000
165A178LEU0-0.045-0.02234.0880.0010.0010.0000.0000.0000.000
166A179PHE00.007-0.00233.1080.0010.0010.0000.0000.0000.000
167A180GLU-1-0.835-0.89229.8140.0360.0360.0000.0000.0000.000
168A181HIS0-0.041-0.01732.4070.0040.0040.0000.0000.0000.000
169A182ASN0-0.035-0.01434.9180.0010.0010.0000.0000.0000.000
170A183GLY0-0.029-0.01131.3460.0030.0030.0000.0000.0000.000
171A184VAL0-0.039-0.01129.8380.0060.0060.0000.0000.0000.000
172A185HIS10.8070.86926.143-0.051-0.0510.0000.0000.0000.000
173A186ALA0-0.018-0.00626.4580.0030.0030.0000.0000.0000.000
174A187THR0-0.018-0.01620.0630.0010.0010.0000.0000.0000.000
175A188LEU00.0300.01919.7880.0000.0000.0000.0000.0000.000
176A189VAL00.002-0.00317.0800.0010.0010.0000.0000.0000.000
177A190ARG10.9020.94015.2350.0410.0410.0000.0000.0000.000
178A191ASN00.0090.00918.173-0.013-0.0130.0000.0000.0000.000
179A192SER0-0.002-0.00321.7150.0060.0060.0000.0000.0000.000
180A193VAL00.0470.02822.5830.0000.0000.0000.0000.0000.000
181A194ILE0-0.041-0.01021.8160.0010.0010.0000.0000.0000.000
182A195VAL00.0170.00524.9240.0010.0010.0000.0000.0000.000
183A196GLN00.0720.02922.5070.0000.0000.0000.0000.0000.000
184A197LYS10.9300.97427.483-0.056-0.0560.0000.0000.0000.000
185A198ASP-1-0.822-0.89626.1440.0690.0690.0000.0000.0000.000
186A199GLN0-0.049-0.04023.502-0.004-0.0040.0000.0000.0000.000
187A200ILE00.0290.03024.8200.0060.0060.0000.0000.0000.000
188A201SER00.001-0.00920.569-0.003-0.0030.0000.0000.0000.000
189A202LEU0-0.011-0.01220.2370.0050.0050.0000.0000.0000.000
190A203LYS10.8710.92023.456-0.080-0.0800.0000.0000.0000.000
191A204ALA0-0.0230.00725.318-0.003-0.0030.0000.0000.0000.000
192A205ILE0-0.022-0.00620.234-0.001-0.0010.0000.0000.0000.000
193A206ARG10.8390.91924.603-0.102-0.1020.0000.0000.0000.000
194A207LEU0-0.0130.00927.112-0.005-0.0050.0000.0000.0000.000
195A208VAL00.015-0.00426.618-0.005-0.0050.0000.0000.0000.000
196A209LEU00.006-0.00325.127-0.003-0.0030.0000.0000.0000.000
197A210SER00.009-0.00827.940-0.006-0.0060.0000.0000.0000.000
198A211CYS0-0.067-0.02531.427-0.008-0.0080.0000.0000.0000.000
199A212HIS00.0100.03929.376-0.004-0.0040.0000.0000.0000.000
200A213ASN00.002-0.00530.1030.0000.0000.0000.0000.0000.000
201A214SER00.046-0.00532.000-0.001-0.0010.0000.0000.0000.000
202A215ASN0-0.041-0.01535.051-0.003-0.0030.0000.0000.0000.000
203A216LEU0-0.0230.00534.946-0.006-0.0060.0000.0000.0000.000
204A217ASP-1-0.874-0.93537.1090.0580.0580.0000.0000.0000.000
205A218GLN00.036-0.00937.2240.0020.0020.0000.0000.0000.000
206A219LYS10.9350.95738.939-0.045-0.0450.0000.0000.0000.000
207A220TYR00.0700.05838.271-0.004-0.0040.0000.0000.0000.000
208A221VAL00.0470.02134.855-0.001-0.0010.0000.0000.0000.000
209A222VAL0-0.049-0.03338.017-0.001-0.0010.0000.0000.0000.000
210A223THR0-0.058-0.03239.728-0.002-0.0020.0000.0000.0000.000
211A224HIS10.8360.91939.514-0.057-0.0570.0000.0000.0000.000
212A225ILE00.0330.03234.6970.0040.0040.0000.0000.0000.000
213A226ASN00.0440.00536.2100.0030.0030.0000.0000.0000.000
214A227GLU-1-0.920-0.95736.6420.0630.0630.0000.0000.0000.000
215A228PHE0-0.012-0.00932.0080.0040.0040.0000.0000.0000.000
216A229GLN0-0.002-0.01231.7210.0040.0040.0000.0000.0000.000
217A230GLN00.0350.06533.093-0.006-0.0060.0000.0000.0000.000
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