FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: 7226K

Calculation Name: 4H63-Q-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 4H63

Chain ID: Q

ChEMBL ID:

UniProt ID: Q9P6Q0

Base Structure: X-ray

Registration Date: 2023-06-21

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 414
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -5806529.508779
FMO2-HF: Nuclear repulsion 5638192.459387
FMO2-HF: Total energy -168337.049392
FMO2-MP2: Total energy -168823.673486


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(Q:99:MET)


Summations of interaction energy for fragment #1(Q:99:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-8.613-7.5099.235-3.197-7.141-0.012
Interaction energy analysis for fragmet #1(Q:99:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.011 / q_NPA : -0.009
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3Q101SER00.0170.0003.846-1.898-0.647-0.015-0.534-0.7020.004
4Q102GLN0-0.022-0.0186.016-0.175-0.1750.0000.0000.0000.000
5Q103ALA0-0.008-0.0134.290-0.0360.121-0.001-0.017-0.1390.000
6Q104TYR00.0480.0242.045-2.052-3.3529.207-2.215-5.692-0.013
7Q105LYS10.9450.9884.9350.7830.859-0.001-0.004-0.0710.000
8Q106LYS10.9410.9607.8710.3380.3380.0000.0000.0000.000
9Q107GLU-1-0.850-0.9213.534-6.138-5.2180.045-0.427-0.537-0.003
10Q108LEU0-0.0150.0057.8870.2380.2380.0000.0000.0000.000
11Q109ILE0-0.053-0.04710.3600.1690.1690.0000.0000.0000.000
12Q110GLU-1-0.928-0.9579.868-0.733-0.7330.0000.0000.0000.000
13Q111GLN00.0430.02110.2770.2030.2030.0000.0000.0000.000
14Q112ILE0-0.028-0.01213.2850.0960.0960.0000.0000.0000.000
15Q113MET0-0.039-0.01215.5870.0800.0800.0000.0000.0000.000
16Q114ILE00.0180.02713.6580.0550.0550.0000.0000.0000.000
17Q115ALA00.0110.00817.3370.0420.0420.0000.0000.0000.000
18Q116GLN0-0.036-0.02019.1930.0670.0670.0000.0000.0000.000
19Q117THR00.003-0.02320.2830.0280.0280.0000.0000.0000.000
20Q118GLU-1-0.918-0.93521.525-0.207-0.2070.0000.0000.0000.000
21Q119CYS0-0.065-0.04522.9840.0210.0210.0000.0000.0000.000
22Q120SER00.005-0.01525.1580.0130.0130.0000.0000.0000.000
23Q121LEU00.0450.03225.9680.0190.0190.0000.0000.0000.000
24Q122ALA0-0.0170.00427.8890.0160.0160.0000.0000.0000.000
25Q123LEU0-0.026-0.01229.4880.0120.0120.0000.0000.0000.000
26Q124ASP-1-0.821-0.90930.217-0.131-0.1310.0000.0000.0000.000
27Q125MET0-0.027-0.00232.3930.0100.0100.0000.0000.0000.000
28Q126THR0-0.010-0.03133.8560.0100.0100.0000.0000.0000.000
29Q127SER00.0350.00534.6310.0060.0060.0000.0000.0000.000
30Q128LEU00.0080.00436.2950.0080.0080.0000.0000.0000.000
31Q129LEU0-0.071-0.01038.6550.0070.0070.0000.0000.0000.000
32Q130LEU00.004-0.01739.1930.0050.0050.0000.0000.0000.000
33Q131SER00.0000.00641.5230.0060.0060.0000.0000.0000.000
34Q132LYS10.8640.94443.3420.0680.0680.0000.0000.0000.000
35Q133PHE0-0.037-0.01944.7450.0040.0040.0000.0000.0000.000
36Q134LYS10.9030.93644.5240.0780.0780.0000.0000.0000.000
37Q135GLU-1-0.868-0.90744.669-0.069-0.0690.0000.0000.0000.000
38Q136ASN00.0410.00143.0280.0020.0020.0000.0000.0000.000
39Q137SER0-0.068-0.03440.253-0.005-0.0050.0000.0000.0000.000
40Q138ILE00.000-0.00138.841-0.004-0.0040.0000.0000.0000.000
41Q139GLU-1-0.976-0.99438.543-0.096-0.0960.0000.0000.0000.000
42Q140THR0-0.031-0.03133.728-0.003-0.0030.0000.0000.0000.000
43Q141ILE0-0.072-0.00233.179-0.007-0.0070.0000.0000.0000.000
44Q142SER00.0360.01630.8850.0070.0070.0000.0000.0000.000
45Q143PRO00.0370.00631.5650.0080.0080.0000.0000.0000.000
46Q144PHE00.0290.01632.2530.0070.0070.0000.0000.0000.000
47Q145LEU00.0660.04533.1850.0080.0080.0000.0000.0000.000
48Q146LYS10.9380.99035.4960.0810.0810.0000.0000.0000.000
49Q147SER0-0.092-0.05137.3440.0050.0050.0000.0000.0000.000
50Q148THR0-0.055-0.05136.6090.0040.0040.0000.0000.0000.000
51Q149VAL0-0.017-0.00637.7470.0040.0040.0000.0000.0000.000
52Q150PRO0-0.0080.01940.105-0.002-0.0020.0000.0000.0000.000
53Q151PRO00.028-0.00242.607-0.003-0.0030.0000.0000.0000.000
54Q152SER0-0.005-0.01143.4540.0040.0040.0000.0000.0000.000
55Q153SER00.009-0.00241.7450.0050.0050.0000.0000.0000.000
56Q154LEU0-0.0330.00737.2100.0010.0010.0000.0000.0000.000
57Q155GLN0-0.016-0.01741.9390.0010.0010.0000.0000.0000.000
58Q156PHE0-0.002-0.00842.376-0.002-0.0020.0000.0000.0000.000
59Q157SER00.0290.01644.1810.0040.0040.0000.0000.0000.000
60Q158ARG10.9390.97745.1930.0690.0690.0000.0000.0000.000
61Q159SER0-0.021-0.04244.9080.0040.0040.0000.0000.0000.000
62Q160GLN00.0000.00340.432-0.005-0.0050.0000.0000.0000.000
63Q161PRO00.0290.05842.705-0.001-0.0010.0000.0000.0000.000
64Q162PRO0-0.012-0.01738.268-0.001-0.0010.0000.0000.0000.000
65Q163GLU-1-0.922-0.97639.232-0.067-0.0670.0000.0000.0000.000
66Q164SER0-0.047-0.01738.108-0.008-0.0080.0000.0000.0000.000
67Q165LYS10.9170.96131.0810.1280.1280.0000.0000.0000.000
68Q166GLU-1-0.884-0.93834.701-0.087-0.0870.0000.0000.0000.000
69Q167SER00.0400.00730.576-0.003-0.0030.0000.0000.0000.000
70Q168ASP-1-0.813-0.91330.053-0.140-0.1400.0000.0000.0000.000
71Q169ALA00.0370.01930.540-0.012-0.0120.0000.0000.0000.000
72Q170THR0-0.084-0.04630.675-0.004-0.0040.0000.0000.0000.000
73Q171LEU00.0130.00825.170-0.008-0.0080.0000.0000.0000.000
74Q172ALA00.0240.02526.812-0.017-0.0170.0000.0000.0000.000
75Q173LYS10.9390.97228.3430.1170.1170.0000.0000.0000.000
76Q174CYS0-0.017-0.02325.560-0.007-0.0070.0000.0000.0000.000
77Q175TRP00.0340.01622.539-0.015-0.0150.0000.0000.0000.000
78Q176LYS10.9780.99423.7830.1920.1920.0000.0000.0000.000
79Q177GLU-1-0.909-0.95325.955-0.182-0.1820.0000.0000.0000.000
80Q178LYS10.9380.95721.6360.1870.1870.0000.0000.0000.000
81Q179SER0-0.0230.00721.252-0.028-0.0280.0000.0000.0000.000
82Q180LEU00.0430.01222.306-0.021-0.0210.0000.0000.0000.000
83Q181THR00.0170.00823.388-0.008-0.0080.0000.0000.0000.000
84Q182SER0-0.049-0.05218.395-0.004-0.0040.0000.0000.0000.000
85Q183SER0-0.0010.01819.539-0.031-0.0310.0000.0000.0000.000
86Q184CYS0-0.011-0.00221.6270.0000.0000.0000.0000.0000.000
87Q185LYS10.9250.97119.0420.2870.2870.0000.0000.0000.000
88Q186PHE00.0800.03914.0520.0020.0020.0000.0000.0000.000
89Q187LEU0-0.002-0.00518.376-0.016-0.0160.0000.0000.0000.000
90Q188PHE0-0.032-0.02421.5020.0150.0150.0000.0000.0000.000
91Q189GLU-1-0.927-0.95415.424-0.518-0.5180.0000.0000.0000.000
92Q190ALA0-0.054-0.03518.168-0.007-0.0070.0000.0000.0000.000
93Q191LYS10.9600.98718.9870.2330.2330.0000.0000.0000.000
94Q192GLU-1-0.908-0.94220.229-0.222-0.2220.0000.0000.0000.000
95Q193ARG10.9590.99015.3730.5960.5960.0000.0000.0000.000
96Q194LEU0-0.005-0.01918.8800.0080.0080.0000.0000.0000.000
97Q195THR0-0.041-0.03220.9550.0280.0280.0000.0000.0000.000
98Q196SER00.0290.01420.3530.0090.0090.0000.0000.0000.000
99Q197VAL0-0.044-0.01418.3540.0060.0060.0000.0000.0000.000
100Q198VAL00.003-0.00621.3400.0150.0150.0000.0000.0000.000
101Q199GLU-1-0.940-0.96524.701-0.164-0.1640.0000.0000.0000.000
102Q200THR00.011-0.00621.8480.0090.0090.0000.0000.0000.000
103Q201GLU-1-0.939-0.96623.381-0.218-0.2180.0000.0000.0000.000
104Q202HIS0-0.010-0.00525.7640.0110.0110.0000.0000.0000.000
105Q203GLU-1-0.900-0.95726.852-0.127-0.1270.0000.0000.0000.000
106Q204TYR0-0.0130.00226.5380.0120.0120.0000.0000.0000.000
107Q205TYR0-0.010-0.01327.4640.0170.0170.0000.0000.0000.000
108Q206THR0-0.079-0.04731.2500.0110.0110.0000.0000.0000.000
109Q207GLU-1-0.877-0.95231.833-0.060-0.0600.0000.0000.0000.000
110Q208LEU00.014-0.00230.0850.0080.0080.0000.0000.0000.000
111Q209VAL0-0.0170.00533.9370.0050.0050.0000.0000.0000.000
112Q210LYS10.9440.98236.3840.0680.0680.0000.0000.0000.000
113Q211VAL00.0070.01035.4020.0060.0060.0000.0000.0000.000
114Q212LYS10.9490.96938.2860.0840.0840.0000.0000.0000.000
115Q213GLU-1-0.981-0.99239.948-0.061-0.0610.0000.0000.0000.000
116Q214ALA0-0.056-0.02241.7280.0030.0030.0000.0000.0000.000
117Q215SER0-0.060-0.03043.0870.0030.0030.0000.0000.0000.000
118Q216TRP0-0.030-0.00240.0040.0020.0020.0000.0000.0000.000
119Q217PRO0-0.009-0.00840.264-0.006-0.0060.0000.0000.0000.000
120Q218LEU0-0.0030.00134.6740.0000.0000.0000.0000.0000.000
121Q219PHE0-0.002-0.00935.521-0.002-0.0020.0000.0000.0000.000
122Q220ASN0-0.0010.01031.160-0.004-0.0040.0000.0000.0000.000
123Q221SER00.0290.02630.4310.0010.0010.0000.0000.0000.000
124Q222GLN00.052-0.01130.277-0.013-0.0130.0000.0000.0000.000
125Q223GLY00.0170.01928.303-0.009-0.0090.0000.0000.0000.000
126Q224SER0-0.068-0.02226.115-0.013-0.0130.0000.0000.0000.000
127Q225ASN0-0.016-0.00524.581-0.011-0.0110.0000.0000.0000.000
128Q226HIS00.0310.00723.358-0.024-0.0240.0000.0000.0000.000
129Q227LEU00.0070.01127.3160.0110.0110.0000.0000.0000.000
130Q228SER0-0.030-0.02830.2320.0040.0040.0000.0000.0000.000
131Q229VAL00.0340.02732.859-0.001-0.0010.0000.0000.0000.000
132Q230GLN00.0250.01036.1720.0000.0000.0000.0000.0000.000
133Q231TYR00.0460.00035.8620.0000.0000.0000.0000.0000.000
134Q232SER0-0.022-0.00339.8750.0030.0030.0000.0000.0000.000
135Q233CYS0-0.025-0.02342.599-0.002-0.0020.0000.0000.0000.000
136Q234LEU0-0.018-0.01344.5990.0010.0010.0000.0000.0000.000
137Q235GLY00.0050.00046.9770.0010.0010.0000.0000.0000.000
138Q236GLY00.0110.00746.7800.0000.0000.0000.0000.0000.000
139Q237ILE0-0.075-0.02647.631-0.002-0.0020.0000.0000.0000.000
140Q238SER0-0.053-0.01942.748-0.002-0.0020.0000.0000.0000.000
141Q239LEU00.006-0.00942.8450.0000.0000.0000.0000.0000.000
142Q240GLY0-0.0010.02238.642-0.003-0.0030.0000.0000.0000.000
143Q241LEU0-0.015-0.00935.5060.0000.0000.0000.0000.0000.000
144Q242GLY00.0330.01332.8780.0050.0050.0000.0000.0000.000
145Q243LEU0-0.028-0.01927.498-0.005-0.0050.0000.0000.0000.000
146Q244ILE0-0.0130.00429.2810.0070.0070.0000.0000.0000.000
147Q245ARG10.9150.95620.0900.1340.1340.0000.0000.0000.000
148Q246MET00.0450.03521.4190.0190.0190.0000.0000.0000.000
149Q247LYS10.9300.96521.5030.0210.0210.0000.0000.0000.000
150Q248PRO0-0.044-0.03917.950-0.001-0.0010.0000.0000.0000.000
151Q249GLU-1-0.942-0.96218.5020.0340.0340.0000.0000.0000.000
152Q250SER00.007-0.00720.705-0.008-0.0080.0000.0000.0000.000
153Q251LYS10.9640.99922.0160.1420.1420.0000.0000.0000.000
154Q252SER0-0.029-0.00823.6700.0000.0000.0000.0000.0000.000
155Q253PHE00.0160.00226.002-0.012-0.0120.0000.0000.0000.000
156Q254GLU-1-0.858-0.91425.700-0.038-0.0380.0000.0000.0000.000
157Q255VAL0-0.033-0.01729.149-0.013-0.0130.0000.0000.0000.000
158Q256GLN0-0.045-0.01724.1210.0020.0020.0000.0000.0000.000
159Q257SER0-0.014-0.03029.465-0.004-0.0040.0000.0000.0000.000
160Q258SER0-0.018-0.01131.3390.0070.0070.0000.0000.0000.000
161Q259LEU0-0.018-0.01233.0350.0060.0060.0000.0000.0000.000
162Q260LEU00.0320.01933.7790.0010.0010.0000.0000.0000.000
163Q261TYR00.0120.01135.2080.0040.0040.0000.0000.0000.000
164Q262SER0-0.0330.00034.667-0.003-0.0030.0000.0000.0000.000
165Q263GLN00.002-0.02436.286-0.003-0.0030.0000.0000.0000.000
166Q264ALA00.0570.01840.0730.0030.0030.0000.0000.0000.000
167Q265ALA0-0.019-0.00242.793-0.003-0.0030.0000.0000.0000.000
168Q266LEU0-0.0200.01046.5830.0030.0030.0000.0000.0000.000
169Q267LYS10.9430.97149.794-0.025-0.0250.0000.0000.0000.000
170Q268ILE0-0.031-0.00151.6790.0010.0010.0000.0000.0000.000
171Q269SER00.009-0.02854.9660.0010.0010.0000.0000.0000.000
172Q270ILE0-0.028-0.01657.040-0.001-0.0010.0000.0000.0000.000
173Q271LEU0-0.080-0.03757.0920.0010.0010.0000.0000.0000.000
174Q272ASN00.000-0.01161.088-0.002-0.0020.0000.0000.0000.000
175Q273LYS10.9080.96563.686-0.017-0.0170.0000.0000.0000.000
176Q274ASP-1-0.929-0.95563.0720.0250.0250.0000.0000.0000.000
177Q275ARG10.8750.93559.150-0.021-0.0210.0000.0000.0000.000
178Q276ASP-1-0.834-0.90458.5500.0300.0300.0000.0000.0000.000
179Q277GLU-1-0.906-0.98254.4670.0220.0220.0000.0000.0000.000
180Q278ILE00.0020.00958.3140.0000.0000.0000.0000.0000.000
181Q279GLY0-0.031-0.02259.235-0.001-0.0010.0000.0000.0000.000
182Q280SER0-0.016-0.00554.474-0.001-0.0010.0000.0000.0000.000
183Q281SER0-0.026-0.02055.108-0.001-0.0010.0000.0000.0000.000
184Q282THR0-0.011-0.00648.2970.0010.0010.0000.0000.0000.000
185Q283TRP0-0.038-0.00448.9400.0000.0000.0000.0000.0000.000
186Q284SER0-0.004-0.00248.7550.0010.0010.0000.0000.0000.000
187Q285TRP00.0480.01346.459-0.002-0.0020.0000.0000.0000.000
188Q286PRO0-0.035-0.00949.2660.0010.0010.0000.0000.0000.000
189Q287SER00.0060.00447.069-0.001-0.0010.0000.0000.0000.000
190Q288GLN00.0230.00345.3700.0010.0010.0000.0000.0000.000
191Q289ASN0-0.042-0.02444.9100.0010.0010.0000.0000.0000.000
192Q290CYS00.0000.00540.554-0.003-0.0030.0000.0000.0000.000
193Q291ASN00.0020.00141.1580.0020.0020.0000.0000.0000.000
194Q292SER0-0.044-0.01336.119-0.001-0.0010.0000.0000.0000.000
195Q293VAL00.033-0.01532.5100.0060.0060.0000.0000.0000.000
196Q294LEU00.0630.04831.3380.0030.0030.0000.0000.0000.000
197Q295LEU00.0280.00134.4340.0020.0020.0000.0000.0000.000
198Q296LYS10.8770.94036.8170.0270.0270.0000.0000.0000.000
199Q297ASP-1-0.849-0.92032.426-0.028-0.0280.0000.0000.0000.000
200Q298ILE0-0.0020.00636.0440.0040.0040.0000.0000.0000.000
201Q299TYR00.0040.01038.0830.0020.0020.0000.0000.0000.000
202Q300LYS10.9390.97737.8030.0140.0140.0000.0000.0000.000
203Q301LEU00.0570.01834.3810.0030.0030.0000.0000.0000.000
204Q302GLN0-0.040-0.00438.6030.0000.0000.0000.0000.0000.000
205Q303GLU-1-0.933-0.97542.032-0.009-0.0090.0000.0000.0000.000
206Q304ILE0-0.022-0.00538.4730.0030.0030.0000.0000.0000.000
207Q305LEU00.012-0.00239.9810.0020.0020.0000.0000.0000.000
208Q306PHE0-0.009-0.01542.1780.0020.0020.0000.0000.0000.000
209Q307GLU-1-0.747-0.86545.0460.0010.0010.0000.0000.0000.000
210Q308MET00.0020.00939.2000.0020.0020.0000.0000.0000.000
211Q309ASP-1-0.799-0.90444.746-0.012-0.0120.0000.0000.0000.000
212Q310ILE0-0.040-0.00347.0210.0010.0010.0000.0000.0000.000
213Q311TRP00.0430.03046.0880.0000.0000.0000.0000.0000.000
214Q312ASN00.0240.00244.6020.0030.0030.0000.0000.0000.000
215Q313SER0-0.053-0.03948.7490.0000.0000.0000.0000.0000.000
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