FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 742LK

Calculation Name: 7V8H-B-Xray547

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 7V8H

Chain ID: B

ChEMBL ID:

UniProt ID:

Base Structure: X-ray

Registration Date: 2025-10-06

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Homology Modeling
Water No
Procedure Manual calculation
Remarks
ac.sh, 23 2024 Oct; Missing atoms/residues were imported from a 100% homology model, which was constructed by MOE.
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 236
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -2848778.194557
FMO2-HF: Nuclear repulsion 2756078.494607
FMO2-HF: Total energy -92699.69995
FMO2-MP2: Total energy -92972.752669


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:38:ASN)


Summations of interaction energy for fragment #1(A:38:ASN)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-16.73-9.6922.642-3.26-6.421-0.015
Interaction energy analysis for fragmet #1(A:38:ASN)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.819 / q_NPA : 0.880
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A40PHE00.0030.0222.5935.4508.7760.575-1.306-2.5950.005
4A41TYR00.0580.0342.285-1.9690.5461.973-1.565-2.923-0.017
5A42LEU00.0070.0103.3677.2467.6120.004-0.095-0.2750.000
32A69LEU0-0.025-0.0162.848-3.614-2.7830.090-0.294-0.628-0.003
6A43LYS10.9830.9906.56930.81530.8150.0000.0000.0000.000
7A44THR00.002-0.0067.5134.5974.5970.0000.0000.0000.000
8A45TRP0-0.016-0.0326.5130.8350.8350.0000.0000.0000.000
9A46SER00.010-0.00910.6122.9442.9440.0000.0000.0000.000
10A47GLU-1-0.857-0.89512.452-20.026-20.0260.0000.0000.0000.000
11A48TRP0-0.013-0.01013.6161.1171.1170.0000.0000.0000.000
12A49GLU-1-0.871-0.92514.921-18.451-18.4510.0000.0000.0000.000
13A50LYS10.8030.87314.82721.89521.8950.0000.0000.0000.000
14A51ASN0-0.0250.00518.5721.5141.5140.0000.0000.0000.000
15A52GLY00.0270.02020.278-0.026-0.0260.0000.0000.0000.000
16A53THR0-0.055-0.04622.0970.7740.7740.0000.0000.0000.000
17A54PRO00.022-0.01425.229-0.264-0.2640.0000.0000.0000.000
18A55GLY0-0.0110.00626.8980.0510.0510.0000.0000.0000.000
19A56GLU-1-0.750-0.82622.053-14.358-14.3580.0000.0000.0000.000
20A57GLN00.0190.00621.909-0.639-0.6390.0000.0000.0000.000
21A58ARG10.7870.85217.65015.50715.5070.0000.0000.0000.000
22A59ASN0-0.039-0.02316.487-0.917-0.9170.0000.0000.0000.000
23A60ILE00.0010.00216.014-1.159-1.1590.0000.0000.0000.000
24A61ALA00.0180.00615.982-0.790-0.7900.0000.0000.0000.000
25A62PHE0-0.006-0.0019.960-2.230-2.2300.0000.0000.0000.000
26A63ASN0-0.019-0.01711.263-3.711-3.7110.0000.0000.0000.000
27A64ARG10.9130.95812.14415.47615.4760.0000.0000.0000.000
28A65LEU0-0.0030.0049.739-0.691-0.6910.0000.0000.0000.000
29A66LYS10.9240.9687.36327.11727.1170.0000.0000.0000.000
30A67ILE0-0.018-0.0107.696-3.411-3.4110.0000.0000.0000.000
31A68CYS00.0010.0249.860-1.607-1.6070.0000.0000.0000.000
33A70GLN0-0.099-0.0555.728-0.264-0.2640.0000.0000.0000.000
34A71ASN0-0.038-0.0277.0120.1060.1060.0000.0000.0000.000
35A72GLN0-0.056-0.0196.4513.3263.3260.0000.0000.0000.000
36A73GLU-1-0.852-0.91510.262-20.703-20.7030.0000.0000.0000.000
37A74ALA00.0430.01412.814-0.964-0.9640.0000.0000.0000.000
38A75GLU-1-0.878-0.94215.431-15.265-15.2650.0000.0000.0000.000
39A76LEU00.0290.01712.349-1.269-1.2690.0000.0000.0000.000
40A77ASN0-0.0040.01515.1731.1041.1040.0000.0000.0000.000
41A78LEU0-0.011-0.00914.457-0.393-0.3930.0000.0000.0000.000
42A79SER0-0.046-0.01718.6510.7020.7020.0000.0000.0000.000
43A80GLU-1-0.931-0.97122.450-12.036-12.0360.0000.0000.0000.000
44A81LEU0-0.016-0.00218.995-0.123-0.1230.0000.0000.0000.000
45A82ASP-1-0.864-0.92622.863-12.309-12.3090.0000.0000.0000.000
46A83LEU0-0.037-0.01118.3870.0750.0750.0000.0000.0000.000
47A84LYS10.9250.94222.22012.27212.2720.0000.0000.0000.000
48A85THR0-0.027-0.00918.302-0.078-0.0780.0000.0000.0000.000
49A86LEU00.0230.00114.951-0.175-0.1750.0000.0000.0000.000
50A87PRO0-0.0120.01211.0120.4950.4950.0000.0000.0000.000
51A88ASP-1-0.854-0.9407.710-26.670-26.6700.0000.0000.0000.000
52A89LEU00.0270.0178.743-2.380-2.3800.0000.0000.0000.000
53A90PRO0-0.028-0.0187.066-2.521-2.5210.0000.0000.0000.000
54A91PRO0-0.004-0.0025.1433.1303.1300.0000.0000.0000.000
55A92GLN00.005-0.0268.173-0.089-0.0890.0000.0000.0000.000
56A93ILE0-0.048-0.00310.5301.9641.9640.0000.0000.0000.000
57A94THR0-0.008-0.01413.2630.6260.6260.0000.0000.0000.000
58A95THR00.0080.00616.9021.4711.4710.0000.0000.0000.000
59A96LEU00.0280.01715.194-1.203-1.2030.0000.0000.0000.000
60A97GLU-1-0.768-0.83918.024-12.178-12.1780.0000.0000.0000.000
61A98ILE00.041-0.00217.960-0.512-0.5120.0000.0000.0000.000
62A99ARG10.8270.88921.22312.55912.5590.0000.0000.0000.000
63A100LYS10.8580.93024.91710.15810.1580.0000.0000.0000.000
64A101ASN0-0.052-0.01121.997-0.160-0.1600.0000.0000.0000.000
65A102LEU0-0.010-0.01524.6250.5580.5580.0000.0000.0000.000
66A103LEU00.0030.01819.9830.1310.1310.0000.0000.0000.000
67A104THR00.0120.00223.4280.6020.6020.0000.0000.0000.000
68A105HIS00.0210.00721.3030.0650.0650.0000.0000.0000.000
69A106LEU0-0.026-0.01518.120-0.309-0.3090.0000.0000.0000.000
70A107PRO00.0050.01213.3210.5110.5110.0000.0000.0000.000
71A108ASP-1-0.897-0.95312.731-17.485-17.4850.0000.0000.0000.000
72A109LEU0-0.019-0.01512.871-1.295-1.2950.0000.0000.0000.000
73A110PRO0-0.021-0.00710.5120.2660.2660.0000.0000.0000.000
74A111PRO00.0170.00011.1751.3001.3000.0000.0000.0000.000
75A112MET0-0.0270.00111.1791.3171.3170.0000.0000.0000.000
76A113LEU00.0060.00814.9840.6540.6540.0000.0000.0000.000
77A114LYS10.8930.97917.19716.60616.6060.0000.0000.0000.000
78A115VAL0-0.0030.00120.2710.8230.8230.0000.0000.0000.000
79A116ILE00.0320.01818.993-0.861-0.8610.0000.0000.0000.000
80A117HIS10.7550.87221.58813.70913.7090.0000.0000.0000.000
81A118ALA00.0840.03322.234-0.505-0.5050.0000.0000.0000.000
82A119GLN00.0120.02423.996-0.050-0.0500.0000.0000.0000.000
83A120PHE0-0.010-0.02227.484-0.218-0.2180.0000.0000.0000.000
84A121ASN0-0.014-0.00223.931-0.564-0.5640.0000.0000.0000.000
85A122GLN0-0.096-0.06426.6330.9410.9410.0000.0000.0000.000
86A123LEU00.0040.01122.7340.1460.1460.0000.0000.0000.000
87A124GLU-1-0.901-0.96326.598-10.045-10.0450.0000.0000.0000.000
88A125SER0-0.034-0.02425.6970.2340.2340.0000.0000.0000.000
89A126LEU0-0.016-0.01022.899-0.329-0.3290.0000.0000.0000.000
90A127PRO00.0360.03018.3380.4500.4500.0000.0000.0000.000
91A128ALA00.009-0.00719.1320.3650.3650.0000.0000.0000.000
92A129LEU00.0090.00818.935-0.717-0.7170.0000.0000.0000.000
93A130PRO0-0.0030.01216.6570.2490.2490.0000.0000.0000.000
94A131GLU0-0.007-0.05318.7690.3550.3550.0000.0000.0000.000
95A132THR0-0.054-0.04518.7240.2680.2680.0000.0000.0000.000
96A133LEU0-0.0260.00020.4440.0040.0040.0000.0000.0000.000
97A134GLU-1-0.891-0.94522.162-12.198-12.1980.0000.0000.0000.000
98A135GLU-1-0.833-0.91624.349-10.963-10.9630.0000.0000.0000.000
99A136LEU00.0400.02523.330-0.612-0.6120.0000.0000.0000.000
100A137ASN0-0.018-0.01425.5590.7120.7120.0000.0000.0000.000
101A138ALA00.0550.01725.721-0.511-0.5110.0000.0000.0000.000
102A139GLY00.0410.03327.4840.2590.2590.0000.0000.0000.000
103A140ASP-1-0.856-0.92630.093-9.693-9.6930.0000.0000.0000.000
104A141ASN0-0.022-0.00927.166-0.505-0.5050.0000.0000.0000.000
105A142LYS10.8860.93829.98810.30410.3040.0000.0000.0000.000
106A143ILE00.0270.03227.2000.1810.1810.0000.0000.0000.000
107A144LYS10.9150.95330.7538.4668.4660.0000.0000.0000.000
108A145GLU-1-0.941-0.97030.489-9.009-9.0090.0000.0000.0000.000
109A146LEU0-0.023-0.01428.563-0.329-0.3290.0000.0000.0000.000
110A147PRO00.0100.01524.1990.2610.2610.0000.0000.0000.000
111A148PHE00.005-0.01225.5840.2420.2420.0000.0000.0000.000
112A149LEU00.0110.00625.744-0.450-0.4500.0000.0000.0000.000
113A150PRO00.0070.01523.1290.2690.2690.0000.0000.0000.000
114A151GLU-1-0.854-0.91925.836-10.692-10.6920.0000.0000.0000.000
115A152ASN0-0.034-0.02624.2980.5640.5640.0000.0000.0000.000
116A153LEU0-0.0190.00525.537-0.062-0.0620.0000.0000.0000.000
117A154THR00.0280.02227.6660.4410.4410.0000.0000.0000.000
118A155HIS0-0.088-0.05729.0310.6580.6580.0000.0000.0000.000
119A156LEU00.0330.02528.510-0.405-0.4050.0000.0000.0000.000
120A157ARG10.8110.88629.51310.70710.7070.0000.0000.0000.000
121A158VAL00.0630.01929.366-0.358-0.3580.0000.0000.0000.000
122A159HIS0-0.015-0.00531.9310.2930.2930.0000.0000.0000.000
123A160ASN0-0.072-0.04533.896-0.114-0.1140.0000.0000.0000.000
124A161ASN0-0.037-0.01130.829-0.400-0.4000.0000.0000.0000.000
125A162ARG10.8870.93534.0689.0579.0570.0000.0000.0000.000
126A163LEU00.0380.03631.8140.1190.1190.0000.0000.0000.000
127A164HIS00.002-0.01435.8120.0770.0770.0000.0000.0000.000
128A165ILE00.0050.00036.6030.2110.2110.0000.0000.0000.000
129A166LEU0-0.0040.00334.371-0.245-0.2450.0000.0000.0000.000
130A167PRO00.0210.01530.5610.2230.2230.0000.0000.0000.000
131A168LEU00.000-0.01833.5220.1280.1280.0000.0000.0000.000
132A169LEU00.0150.00832.671-0.309-0.3090.0000.0000.0000.000
133A170PRO00.0010.01929.5820.1840.1840.0000.0000.0000.000
134A171PRO00.022-0.00131.6670.1260.1260.0000.0000.0000.000
135A172GLU-1-0.797-0.89330.898-8.923-8.9230.0000.0000.0000.000
136A173LEU0-0.049-0.00831.356-0.097-0.0970.0000.0000.0000.000
137A174LYS10.9170.97733.3619.1549.1540.0000.0000.0000.000
138A175LEU0-0.062-0.03533.2890.2680.2680.0000.0000.0000.000
139A176LEU00.0420.02433.553-0.292-0.2920.0000.0000.0000.000
140A177VAL0-0.045-0.02634.3790.2900.2900.0000.0000.0000.000
141A178VAL00.0620.01734.515-0.265-0.2650.0000.0000.0000.000
142A179SER0-0.018-0.00636.7180.1420.1420.0000.0000.0000.000
143A180GLY00.0180.01938.201-0.220-0.2200.0000.0000.0000.000
144A181ASN0-0.074-0.03835.328-0.356-0.3560.0000.0000.0000.000
145A182ARG10.8800.93438.8687.4347.4340.0000.0000.0000.000
146A183LEU00.0110.02037.1820.0730.0730.0000.0000.0000.000
147A184ASP-1-0.805-0.90541.063-6.956-6.9560.0000.0000.0000.000
148A185SER0-0.061-0.03242.3950.1440.1440.0000.0000.0000.000
149A186ILE00.009-0.00639.843-0.196-0.1960.0000.0000.0000.000
150A187PRO0-0.0160.01037.0710.1940.1940.0000.0000.0000.000
151A188PRO00.001-0.02240.257-0.001-0.0010.0000.0000.0000.000
152A189PHE00.0070.00339.394-0.219-0.2190.0000.0000.0000.000
153A190PRO00.0050.02435.8610.1560.1560.0000.0000.0000.000
154A191ASP-1-0.928-0.98638.848-7.687-7.6870.0000.0000.0000.000
155A192LYS10.8430.90735.3768.8258.8250.0000.0000.0000.000
156A193LEU0-0.0170.00936.897-0.120-0.1200.0000.0000.0000.000
157A194GLU-1-0.880-0.93538.471-7.998-7.9980.0000.0000.0000.000
158A195GLY0-0.035-0.02038.7850.2170.2170.0000.0000.0000.000
159A196LEU00.0350.01738.386-0.220-0.2200.0000.0000.0000.000
160A197ALA0-0.055-0.03238.9700.2000.2000.0000.0000.0000.000
161A198LEU00.0780.03839.181-0.224-0.2240.0000.0000.0000.000
162A199ALA00.0150.02541.4270.1040.1040.0000.0000.0000.000
163A200ASN0-0.031-0.01742.657-0.043-0.0430.0000.0000.0000.000
164A201ASN0-0.054-0.03040.077-0.279-0.2790.0000.0000.0000.000
165A202PHE0-0.007-0.01443.5840.1640.1640.0000.0000.0000.000
166A203ILE0-0.0030.02242.3070.0940.0940.0000.0000.0000.000
167A204GLU-1-0.850-0.92646.592-6.007-6.0070.0000.0000.0000.000
168A205GLN0-0.045-0.03348.6600.0820.0820.0000.0000.0000.000
169A206LEU0-0.023-0.00844.962-0.163-0.1630.0000.0000.0000.000
170A207PRO0-0.020-0.00843.4610.1310.1310.0000.0000.0000.000
171A208GLU-1-0.800-0.89246.473-6.165-6.1650.0000.0000.0000.000
172A209LEU0-0.002-0.01745.161-0.183-0.1830.0000.0000.0000.000
173A210PRO00.0040.02241.8660.1530.1530.0000.0000.0000.000
174A211PHE0-0.009-0.02245.020-0.011-0.0110.0000.0000.0000.000
175A212SER00.001-0.00741.5680.0770.0770.0000.0000.0000.000
176A213MET0-0.057-0.01142.938-0.107-0.1070.0000.0000.0000.000
177A214ASN00.005-0.00341.9500.1690.1690.0000.0000.0000.000
178A215ARG10.8960.95241.9457.3727.3720.0000.0000.0000.000
179A216ALA00.0460.03043.043-0.158-0.1580.0000.0000.0000.000
180A217VAL0-0.065-0.04242.8120.1760.1760.0000.0000.0000.000
181A218LEU00.0490.00643.873-0.159-0.1590.0000.0000.0000.000
182A219MET0-0.0270.00346.3000.0450.0450.0000.0000.0000.000
183A220ASN0-0.050-0.03347.079-0.053-0.0530.0000.0000.0000.000
184A221ASN0-0.008-0.00544.806-0.207-0.2070.0000.0000.0000.000
185A222ASN0-0.012-0.02348.6480.1850.1850.0000.0000.0000.000
186A223LEU00.0070.01848.4800.0910.0910.0000.0000.0000.000
187A224THR00.0520.02952.1440.0970.0970.0000.0000.0000.000
188A225THR0-0.050-0.02254.5470.1170.1170.0000.0000.0000.000
189A226LEU00.0190.00651.867-0.105-0.1050.0000.0000.0000.000
190A227PRO00.0280.03349.2010.1250.1250.0000.0000.0000.000
191A228GLU-1-0.914-0.96152.415-5.715-5.7150.0000.0000.0000.000
192A229SER00.028-0.01349.580-0.006-0.0060.0000.0000.0000.000
193A230VAL0-0.041-0.02050.298-0.068-0.0680.0000.0000.0000.000
194A231LEU0-0.026-0.02751.8870.0090.0090.0000.0000.0000.000
195A232ARG10.9080.96652.4485.8305.8300.0000.0000.0000.000
196A233LEU0-0.0090.00847.513-0.061-0.0610.0000.0000.0000.000
197A234ALA00.0440.01849.6570.1320.1320.0000.0000.0000.000
198A235GLN00.0310.01451.448-0.080-0.0800.0000.0000.0000.000
199A236ASN0-0.070-0.04249.3190.0330.0330.0000.0000.0000.000
200A237ALA00.0090.02748.128-0.115-0.1150.0000.0000.0000.000
201A238PHE0-0.056-0.03646.9260.1150.1150.0000.0000.0000.000
202A239VAL00.0740.03247.506-0.158-0.1580.0000.0000.0000.000
203A240ASN0-0.028-0.02048.5860.2230.2230.0000.0000.0000.000
204A241VAL00.0700.02848.809-0.144-0.1440.0000.0000.0000.000
205A242ALA0-0.0090.00551.2170.0920.0920.0000.0000.0000.000
206A243GLY00.0520.02051.448-0.132-0.1320.0000.0000.0000.000
207A244ASN0-0.022-0.00549.693-0.108-0.1080.0000.0000.0000.000
208A245PRO0-0.0030.02353.3830.1160.1160.0000.0000.0000.000
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