FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: 763JK

Calculation Name: 1UIJ-B-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1UIJ

Chain ID: B

ChEMBL ID:

UniProt ID: P25974

Base Structure: X-ray

Registration Date: 2023-09-20

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 370
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 22 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -6245637.646595
FMO2-HF: Nuclear repulsion 6098802.603223
FMO2-HF: Total energy -146835.043371
FMO2-MP2: Total energy -147275.399168


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(B:4:ARG)


Summations of interaction energy for fragment #1(B:4:ARG)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-108.185-94.01122.387-13.228-23.332-0.139
Interaction energy analysis for fragmet #1(B:4:ARG)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.821 / q_NPA : 0.903
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3B6ASP-1-0.786-0.8733.794-31.388-29.9480.002-0.650-0.7930.000
4B7GLU-1-0.976-0.9815.306-23.938-23.9380.0000.0000.0000.000
5B8ASN0-0.035-0.0151.950-30.175-28.0887.518-4.053-5.552-0.042
6B9ASN00.029-0.0012.397-29.914-25.6533.815-3.500-4.575-0.043
7B10PRO0-0.042-0.0352.9646.0077.2350.168-0.305-1.0910.000
8B11PHE0-0.028-0.0215.3174.4454.4450.0000.0000.0000.000
9B12TYR0-0.004-0.0117.5082.8382.8380.0000.0000.0000.000
10B13PHE0-0.057-0.0379.165-1.539-1.5390.0000.0000.0000.000
11B14ARG10.8850.93410.30124.11424.1140.0000.0000.0000.000
12B15SER00.0610.00513.7450.5230.5230.0000.0000.0000.000
13B16SER0-0.032-0.00816.7720.3870.3870.0000.0000.0000.000
14B17ASN00.001-0.00612.7030.4410.4410.0000.0000.0000.000
15B18SER0-0.0070.01213.613-1.109-1.1090.0000.0000.0000.000
16B19PHE0-0.026-0.01815.775-0.018-0.0180.0000.0000.0000.000
17B20GLN0-0.027-0.01019.4760.0200.0200.0000.0000.0000.000
18B21THR0-0.002-0.00622.443-0.101-0.1010.0000.0000.0000.000
19B22LEU0-0.043-0.01725.6390.0380.0380.0000.0000.0000.000
20B23PHE00.0350.01428.5710.4340.4340.0000.0000.0000.000
21B24GLU-1-0.878-0.94928.410-11.448-11.4480.0000.0000.0000.000
22B25ASN0-0.026-0.01232.170-0.006-0.0060.0000.0000.0000.000
23B26GLN00.018-0.00334.677-0.371-0.3710.0000.0000.0000.000
24B27ASN0-0.031-0.01236.9230.0710.0710.0000.0000.0000.000
25B28GLY00.022-0.00833.7090.0160.0160.0000.0000.0000.000
26B29ARG10.8470.94524.49812.07512.0750.0000.0000.0000.000
27B30ILE00.0150.01628.166-0.040-0.0400.0000.0000.0000.000
28B31ARG10.8220.90720.79513.98213.9820.0000.0000.0000.000
29B32LEU00.0060.00821.767-0.002-0.0020.0000.0000.0000.000
30B33LEU00.0360.02915.496-0.335-0.3350.0000.0000.0000.000
31B34GLN00.0340.01812.445-0.294-0.2940.0000.0000.0000.000
32B35ARG10.9350.96415.90217.31917.3190.0000.0000.0000.000
33B36PHE00.1290.06613.662-1.412-1.4120.0000.0000.0000.000
34B37ASN0-0.027-0.02212.155-2.034-2.0340.0000.0000.0000.000
35B38LYS10.8610.91512.30818.34118.3410.0000.0000.0000.000
36B39ARG10.8280.9488.03730.92230.9220.0000.0000.0000.000
37B40SER00.009-0.0106.729-3.999-3.9990.0000.0000.0000.000
38B41PRO00.0520.0197.5401.8981.8980.0000.0000.0000.000
39B42GLN0-0.0260.0014.7304.4174.476-0.0010.001-0.0580.000
40B43LEU00.0270.0159.0381.1251.1250.0000.0000.0000.000
41B44GLU-1-0.795-0.88812.060-16.372-16.3720.0000.0000.0000.000
42B45ASN0-0.030-0.01414.6091.8011.8010.0000.0000.0000.000
43B46LEU00.0330.02014.4360.5520.5520.0000.0000.0000.000
44B47ARG10.7880.87917.24415.86215.8620.0000.0000.0000.000
45B48ASP-1-0.898-0.95518.186-13.931-13.9310.0000.0000.0000.000
46B49TYR00.0350.01819.9120.5030.5030.0000.0000.0000.000
47B50ARG10.7350.84119.70414.52014.5200.0000.0000.0000.000
48B51ILE00.0360.02918.9860.3870.3870.0000.0000.0000.000
49B52VAL00.0030.00721.448-0.320-0.3200.0000.0000.0000.000
50B53GLN0-0.022-0.02222.8760.2030.2030.0000.0000.0000.000
51B54PHE00.0350.00924.9350.2000.2000.0000.0000.0000.000
52B55GLN00.0310.01727.087-0.264-0.2640.0000.0000.0000.000
53B56SER0-0.013-0.00730.7110.0550.0550.0000.0000.0000.000
54B57LYS10.9550.96834.4638.8458.8450.0000.0000.0000.000
55B58PRO0-0.0200.01437.0580.0200.0200.0000.0000.0000.000
56B59ASN0-0.026-0.02339.7860.2380.2380.0000.0000.0000.000
57B60THR00.0120.00338.5320.0070.0070.0000.0000.0000.000
58B61ILE0-0.039-0.02340.1010.0130.0130.0000.0000.0000.000
59B62LEU0-0.0120.01633.924-0.025-0.0250.0000.0000.0000.000
60B63LEU00.007-0.00938.0570.1300.1300.0000.0000.0000.000
61B64PRO0-0.014-0.01639.291-0.201-0.2010.0000.0000.0000.000
62B65HIS10.8640.95233.7389.1829.1820.0000.0000.0000.000
63B66HIS00.0640.05337.196-0.144-0.1440.0000.0000.0000.000
64B67ALA00.0440.02232.144-0.155-0.1550.0000.0000.0000.000
65B68ASP-1-0.776-0.86731.307-10.300-10.3000.0000.0000.0000.000
66B69ALA00.002-0.01228.756-0.315-0.3150.0000.0000.0000.000
67B70ASP-1-0.755-0.82630.118-9.591-9.5910.0000.0000.0000.000
68B71PHE00.000-0.01028.320-0.566-0.5660.0000.0000.0000.000
69B72LEU00.0010.00427.0550.3280.3280.0000.0000.0000.000
70B73LEU00.005-0.00227.781-0.467-0.4670.0000.0000.0000.000
71B74PHE00.0430.00726.9180.1150.1150.0000.0000.0000.000
72B75VAL0-0.009-0.00528.719-0.204-0.2040.0000.0000.0000.000
73B76LEU0-0.053-0.01224.1310.0290.0290.0000.0000.0000.000
74B77SER00.0270.00628.2130.2250.2250.0000.0000.0000.000
75B78GLY00.0430.02830.993-0.040-0.0400.0000.0000.0000.000
76B79ARG10.8190.89534.3787.5647.5640.0000.0000.0000.000
77B80ALA00.0280.01035.471-0.015-0.0150.0000.0000.0000.000
78B81ILE0-0.055-0.02837.5950.1990.1990.0000.0000.0000.000
79B82LEU00.0320.03636.054-0.035-0.0350.0000.0000.0000.000
80B83THR0-0.096-0.07039.2480.2840.2840.0000.0000.0000.000
81B84LEU00.0790.04038.044-0.143-0.1430.0000.0000.0000.000
82B85VAL0-0.069-0.04941.9110.2070.2070.0000.0000.0000.000
83B86ASN0-0.006-0.00143.883-0.312-0.3120.0000.0000.0000.000
84B87ASN0-0.071-0.04645.693-0.063-0.0630.0000.0000.0000.000
85B88ASP-1-0.898-0.95448.243-6.494-6.4940.0000.0000.0000.000
86B89ASP-1-0.894-0.92348.058-6.594-6.5940.0000.0000.0000.000
87B90ARG10.9240.94345.9006.5126.5120.0000.0000.0000.000
88B91ASP-1-0.805-0.85144.498-6.949-6.9490.0000.0000.0000.000
89B92SER0-0.085-0.04143.578-0.111-0.1110.0000.0000.0000.000
90B93TYR0-0.004-0.02339.9410.0100.0100.0000.0000.0000.000
91B94ASN0-0.055-0.03740.631-0.167-0.1670.0000.0000.0000.000
92B95LEU0-0.031-0.00935.103-0.014-0.0140.0000.0000.0000.000
93B96HIS0-0.020-0.03636.0970.2140.2140.0000.0000.0000.000
94B97PRO00.0310.01131.800-0.175-0.1750.0000.0000.0000.000
95B98GLY00.0100.01130.2820.1710.1710.0000.0000.0000.000
96B99ASP-1-0.791-0.85331.343-8.502-8.5020.0000.0000.0000.000
97B100ALA0-0.006-0.00430.252-0.298-0.2980.0000.0000.0000.000
98B101GLN0-0.014-0.03332.0290.3120.3120.0000.0000.0000.000
99B102ARG10.8000.86532.5009.2309.2300.0000.0000.0000.000
100B103ILE0-0.023-0.01033.0290.3200.3200.0000.0000.0000.000
101B104PRO00.0430.02233.623-0.311-0.3110.0000.0000.0000.000
102B105ALA00.0130.01433.1610.1250.1250.0000.0000.0000.000
103B106GLY0-0.032-0.00634.8570.2370.2370.0000.0000.0000.000
104B107THR0-0.032-0.02737.4500.3230.3230.0000.0000.0000.000
105B108THR0-0.018-0.01138.170-0.171-0.1710.0000.0000.0000.000
106B109TYR0-0.019-0.00632.9650.1190.1190.0000.0000.0000.000
107B110TYR0-0.004-0.00639.3010.0580.0580.0000.0000.0000.000
108B111LEU00.0020.00334.0570.0250.0250.0000.0000.0000.000
109B112VAL0-0.006-0.00438.550-0.003-0.0030.0000.0000.0000.000
110B113ASN00.0320.02636.6230.0280.0280.0000.0000.0000.000
111B114PRO0-0.064-0.03938.9870.1840.1840.0000.0000.0000.000
112B115HIS0-0.0010.00237.4040.3850.3850.0000.0000.0000.000
113B116ASP-1-0.833-0.91241.296-6.836-6.8360.0000.0000.0000.000
114B117HIS00.0070.00240.979-0.066-0.0660.0000.0000.0000.000
115B118GLN0-0.0070.00335.646-0.181-0.1810.0000.0000.0000.000
116B119ASN00.0360.00533.1230.2520.2520.0000.0000.0000.000
117B120LEU0-0.028-0.00432.7990.0280.0280.0000.0000.0000.000
118B121LYS10.8170.90324.04212.00712.0070.0000.0000.0000.000
119B122MET0-0.026-0.01728.6320.2270.2270.0000.0000.0000.000
120B123ILE00.0150.01622.354-0.371-0.3710.0000.0000.0000.000
121B124TRP00.001-0.01325.6790.4300.4300.0000.0000.0000.000
122B125LEU0-0.0080.01821.526-0.568-0.5680.0000.0000.0000.000
123B126ALA00.0160.00224.1210.6100.6100.0000.0000.0000.000
124B127ILE00.014-0.00424.377-0.737-0.7370.0000.0000.0000.000
125B128PRO0-0.079-0.04324.8210.4710.4710.0000.0000.0000.000
126B129VAL00.0210.02327.421-0.199-0.1990.0000.0000.0000.000
127B130ASN0-0.050-0.03630.1130.1650.1650.0000.0000.0000.000
128B131LYS10.7490.85626.53410.63510.6350.0000.0000.0000.000
129B132PRO00.0280.03522.136-0.128-0.1280.0000.0000.0000.000
130B133GLY00.0680.03921.292-0.376-0.3760.0000.0000.0000.000
131B134ARG10.8500.91322.30912.13512.1350.0000.0000.0000.000
132B135TYR0-0.040-0.03124.897-0.020-0.0200.0000.0000.0000.000
133B136ASP-1-0.847-0.90128.338-10.652-10.6520.0000.0000.0000.000
134B137ASP-1-0.812-0.91631.136-10.118-10.1180.0000.0000.0000.000
135B138PHE0-0.021-0.00833.4640.1810.1810.0000.0000.0000.000
136B139PHE00.009-0.02034.4310.1540.1540.0000.0000.0000.000
137B140LEU00.0340.02239.1400.1120.1120.0000.0000.0000.000
138B141SER0-0.0010.02142.2420.1570.1570.0000.0000.0000.000
139B142SER00.0160.01542.712-0.233-0.2330.0000.0000.0000.000
140B143THR0-0.095-0.04741.1590.0230.0230.0000.0000.0000.000
141B144GLN00.004-0.01742.712-0.076-0.0760.0000.0000.0000.000
142B145ALA0-0.047-0.00837.217-0.077-0.0770.0000.0000.0000.000
143B146GLN0-0.047-0.03237.257-0.252-0.2520.0000.0000.0000.000
144B147GLN00.0360.03239.3410.3180.3180.0000.0000.0000.000
145B148SER00.0280.01141.018-0.147-0.1470.0000.0000.0000.000
146B149TYR00.0350.00040.0590.0530.0530.0000.0000.0000.000
147B150LEU0-0.0080.00041.9540.0620.0620.0000.0000.0000.000
148B151GLN0-0.017-0.02544.5230.0820.0820.0000.0000.0000.000
149B152GLY0-0.0230.00243.344-0.015-0.0150.0000.0000.0000.000
150B153PHE0-0.047-0.01444.0730.0280.0280.0000.0000.0000.000
151B154SER00.007-0.00547.6930.0690.0690.0000.0000.0000.000
152B155HIS10.8340.91750.5316.1156.1150.0000.0000.0000.000
153B156ASN00.1320.07153.7130.0760.0760.0000.0000.0000.000
154B157ILE0-0.0140.01450.4270.0760.0760.0000.0000.0000.000
155B158LEU00.0110.02549.2510.0350.0350.0000.0000.0000.000
156B159GLU-1-0.826-0.93753.189-5.592-5.5920.0000.0000.0000.000
157B160THR0-0.059-0.04456.3870.1130.1130.0000.0000.0000.000
158B161SER0-0.087-0.05553.2190.0180.0180.0000.0000.0000.000
159B162PHE0-0.041-0.03250.799-0.026-0.0260.0000.0000.0000.000
160B163HIS0-0.054-0.00856.5800.0350.0350.0000.0000.0000.000
161B164SER0-0.016-0.02258.9070.1040.1040.0000.0000.0000.000
162B165GLU-1-0.896-0.94059.125-5.242-5.2420.0000.0000.0000.000
163B166PHE00.041-0.01151.131-0.107-0.1070.0000.0000.0000.000
164B167GLU-1-0.838-0.90355.800-5.582-5.5820.0000.0000.0000.000
165B168GLU-1-0.758-0.84456.923-5.453-5.4530.0000.0000.0000.000
166B169ILE0-0.007-0.00252.449-0.097-0.0970.0000.0000.0000.000
167B170ASN0-0.018-0.01651.439-0.187-0.1870.0000.0000.0000.000
168B171ARG10.7330.84852.5445.3405.3400.0000.0000.0000.000
169B172VAL0-0.053-0.02654.135-0.011-0.0110.0000.0000.0000.000
170B173LEU0-0.046-0.01249.675-0.095-0.0950.0000.0000.0000.000
171B174PHE0-0.038-0.03147.831-0.171-0.1710.0000.0000.0000.000
172B175GLY00.0050.01648.137-0.137-0.1370.0000.0000.0000.000
173B183GLN00.0430.01744.7740.0080.0080.0000.0000.0000.000
174B184GLU-1-0.834-0.91140.853-7.889-7.8890.0000.0000.0000.000
175B185GLY0-0.006-0.03038.418-0.020-0.0200.0000.0000.0000.000
176B186VAL00.0210.02135.4890.1310.1310.0000.0000.0000.000
177B187ILE0-0.035-0.00433.456-0.007-0.0070.0000.0000.0000.000
178B188VAL00.0060.01338.0350.0230.0230.0000.0000.0000.000
179B189GLU-1-0.878-0.94041.474-7.304-7.3040.0000.0000.0000.000
180B190LEU0-0.079-0.04643.3700.1610.1610.0000.0000.0000.000
181B191SER00.032-0.00246.3980.0020.0020.0000.0000.0000.000
182B192LYS10.9060.90046.5886.7536.7530.0000.0000.0000.000
183B193GLU-1-0.815-0.85849.333-5.830-5.8300.0000.0000.0000.000
184B194GLN00.0650.04648.9160.0170.0170.0000.0000.0000.000
185B195ILE00.0790.06044.537-0.023-0.0230.0000.0000.0000.000
186B196ARG10.8440.92147.4075.9735.9730.0000.0000.0000.000
187B197GLN0-0.039-0.03650.1310.0550.0550.0000.0000.0000.000
188B198LEU0-0.024-0.00845.6070.0580.0580.0000.0000.0000.000
189B199SER00.014-0.03245.8390.0370.0370.0000.0000.0000.000
190B200ARG10.8200.91747.1305.9545.9540.0000.0000.0000.000
191B201ARG10.9040.95348.7136.4336.4330.0000.0000.0000.000
192B202ALA00.0000.01443.673-0.036-0.0360.0000.0000.0000.000
193B203LYS10.8510.92244.5817.0227.0220.0000.0000.0000.000
194B204SER00.0190.01741.841-0.193-0.1930.0000.0000.0000.000
195B205SER0-0.013-0.01737.6460.1830.1830.0000.0000.0000.000
196B206SER0-0.003-0.01840.4050.1900.1900.0000.0000.0000.000
197B207ARG10.8880.91738.4537.7757.7750.0000.0000.0000.000
198B208LYS10.9350.96841.0236.6466.6460.0000.0000.0000.000
199B209THR00.0120.01338.5940.0830.0830.0000.0000.0000.000
200B210ILE0-0.058-0.02535.550-0.137-0.1370.0000.0000.0000.000
201B211SER0-0.032-0.02636.547-0.279-0.2790.0000.0000.0000.000
202B212SER00.0340.03538.7810.0690.0690.0000.0000.0000.000
203B213GLU-1-0.848-0.94638.250-8.020-8.0200.0000.0000.0000.000
204B214ASP-1-0.892-0.93338.677-7.770-7.7700.0000.0000.0000.000
205B215GLU-1-0.812-0.87138.943-7.343-7.3430.0000.0000.0000.000
206B216PRO0-0.0040.01836.524-0.230-0.2300.0000.0000.0000.000
207B217PHE0-0.032-0.03831.3660.2440.2440.0000.0000.0000.000
208B218ASN0-0.015-0.00834.018-0.346-0.3460.0000.0000.0000.000
209B219LEU00.0020.01427.0010.1790.1790.0000.0000.0000.000
210B220ARG10.8030.85226.69410.48910.4890.0000.0000.0000.000
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212B222ARG10.8660.91831.7069.5579.5570.0000.0000.0000.000
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