FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: 76MLK

Calculation Name: 2HWJ-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 2HWJ

Chain ID: A

ChEMBL ID:

UniProt ID: A9CIY5

Base Structure: X-ray

Registration Date: 2023-09-22

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 201
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2277388.065293
FMO2-HF: Nuclear repulsion 2197556.418169
FMO2-HF: Total energy -79831.647125
FMO2-MP2: Total energy -80068.125727


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:4:ILE)


Summations of interaction energy for fragment #1(A:4:ILE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-7.617-2.9392.154-2.732-4.099-0.008
Interaction energy analysis for fragmet #1(A:4:ILE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.021 / q_NPA : 0.005
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A6GLU-1-0.848-0.9283.091-8.197-4.2860.119-1.822-2.208-0.006
4A7PRO0-0.0230.0134.8750.4110.515-0.001-0.007-0.0950.000
5A8ARG10.9100.9442.2820.1150.7782.036-0.903-1.796-0.002
6A9LEU00.0240.0358.9000.0430.0430.0000.0000.0000.000
7A10SER0-0.010-0.00211.1280.0450.0450.0000.0000.0000.000
8A11ARG10.9240.96213.1780.0660.0660.0000.0000.0000.000
9A12ILE0-0.027-0.00416.7530.0180.0180.0000.0000.0000.000
10A13ALA00.0800.04219.188-0.003-0.0030.0000.0000.0000.000
11A14ILE00.024-0.00122.847-0.009-0.0090.0000.0000.0000.000
12A15ASP-1-0.805-0.88324.700-0.066-0.0660.0000.0000.0000.000
13A16LYS10.7660.85221.8140.0580.0580.0000.0000.0000.000
14A17LEU0-0.0070.01619.704-0.007-0.0070.0000.0000.0000.000
15A18ARG10.8640.92621.9830.1070.1070.0000.0000.0000.000
16A19PRO00.0130.00823.186-0.020-0.0200.0000.0000.0000.000
17A20THR0-0.030-0.03022.4120.0040.0040.0000.0000.0000.000
18A21GLN0-0.033-0.02725.730-0.011-0.0110.0000.0000.0000.000
19A22ILE00.010-0.00129.3220.0030.0030.0000.0000.0000.000
20A23ALA00.0510.04232.6970.0050.0050.0000.0000.0000.000
21A24VAL0-0.040-0.02131.237-0.011-0.0110.0000.0000.0000.000
22A25GLY00.0440.02434.2220.0070.0070.0000.0000.0000.000
23A26PHE00.051-0.00636.089-0.002-0.0020.0000.0000.0000.000
24A27ARG10.8140.89438.1910.0740.0740.0000.0000.0000.000
25A28GLU-1-0.786-0.87232.757-0.132-0.1320.0000.0000.0000.000
26A29VAL0-0.031-0.00533.393-0.004-0.0040.0000.0000.0000.000
27A30GLU-1-0.796-0.88735.234-0.074-0.0740.0000.0000.0000.000
28A31LEU0-0.020-0.00437.5900.0020.0020.0000.0000.0000.000
29A32LYS10.9030.93630.6260.1300.1300.0000.0000.0000.000
30A33ARG10.7620.85934.1690.0700.0700.0000.0000.0000.000
31A34LYS10.7510.87935.9360.0700.0700.0000.0000.0000.000
32A35GLU-1-0.876-0.94234.013-0.112-0.1120.0000.0000.0000.000
33A36TRP00.0030.00128.549-0.001-0.0010.0000.0000.0000.000
34A37ARG10.8570.91833.6290.0680.0680.0000.0000.0000.000
35A38GLU-1-0.834-0.89936.859-0.061-0.0610.0000.0000.0000.000
36A39THR0-0.0140.00032.8760.0010.0010.0000.0000.0000.000
37A40ARG10.8100.89132.5050.0720.0720.0000.0000.0000.000
38A41LYS10.8800.92532.5670.0730.0730.0000.0000.0000.000
39A42LYS10.9180.95934.7890.0370.0370.0000.0000.0000.000
40A43ASP-1-0.837-0.91130.929-0.076-0.0760.0000.0000.0000.000
41A44GLY00.0170.02528.7290.0070.0070.0000.0000.0000.000
42A45ASP-1-0.932-0.96627.776-0.035-0.0350.0000.0000.0000.000
43A46ASP-1-0.824-0.89821.797-0.085-0.0850.0000.0000.0000.000
44A47PHE0-0.042-0.04117.244-0.003-0.0030.0000.0000.0000.000
45A48LEU0-0.033-0.00618.817-0.026-0.0260.0000.0000.0000.000
46A49GLY0-0.0050.00322.3230.0130.0130.0000.0000.0000.000
47A50ASN0-0.067-0.04822.3050.0020.0020.0000.0000.0000.000
48A51HIS00.0260.00121.939-0.018-0.0180.0000.0000.0000.000
49A52ILE0-0.008-0.00216.2010.0050.0050.0000.0000.0000.000
50A53VAL0-0.025-0.00618.856-0.011-0.0110.0000.0000.0000.000
51A54PRO0-0.0070.00416.473-0.021-0.0210.0000.0000.0000.000
52A55VAL00.017-0.00714.8450.0520.0520.0000.0000.0000.000
53A56VAL00.0050.00814.361-0.070-0.0700.0000.0000.0000.000
54A57ALA00.0150.02512.5470.0520.0520.0000.0000.0000.000
55A58GLY00.0400.00514.522-0.022-0.0220.0000.0000.0000.000
56A59PRO0-0.003-0.00616.8930.0130.0130.0000.0000.0000.000
57A60LYS10.8750.93518.4540.0380.0380.0000.0000.0000.000
58A61ASP-1-0.825-0.91115.820-0.043-0.0430.0000.0000.0000.000
59A62ARG10.8180.91716.7030.0780.0780.0000.0000.0000.000
60A63ALA00.0590.03416.780-0.022-0.0220.0000.0000.0000.000
61A64TYR0-0.017-0.01417.7480.0310.0310.0000.0000.0000.000
62A65LEU00.0220.01418.840-0.034-0.0340.0000.0000.0000.000
63A66ILE0-0.0130.00318.0300.0090.0090.0000.0000.0000.000
64A67ASP-1-0.800-0.89921.194-0.238-0.2380.0000.0000.0000.000
65A68HIS0-0.066-0.05221.7200.0160.0160.0000.0000.0000.000
66A69HIS00.0890.04924.8490.0190.0190.0000.0000.0000.000
67A70HIS00.0230.01827.7070.0160.0160.0000.0000.0000.000
68A71LEU00.0210.01025.7700.0090.0090.0000.0000.0000.000
69A72VAL00.0150.01324.0430.0080.0080.0000.0000.0000.000
70A73LEU00.0160.00927.1450.0110.0110.0000.0000.0000.000
71A74ALA0-0.016-0.00430.6240.0090.0090.0000.0000.0000.000
72A75LEU00.0490.00226.0970.0070.0070.0000.0000.0000.000
73A76SER0-0.053-0.01329.1810.0090.0090.0000.0000.0000.000
74A77LYS10.8460.91730.5190.0860.0860.0000.0000.0000.000
75A78GLU-1-0.836-0.89532.480-0.064-0.0640.0000.0000.0000.000
76A79GLY0-0.0160.00432.7600.0030.0030.0000.0000.0000.000
77A80VAL0-0.042-0.01626.7950.0050.0050.0000.0000.0000.000
78A81GLU-1-0.858-0.93426.897-0.049-0.0490.0000.0000.0000.000
79A82HIS0-0.077-0.03321.918-0.010-0.0100.0000.0000.0000.000
80A83VAL00.0100.01420.4660.0000.0000.0000.0000.0000.000
81A84LEU00.0000.01017.4560.0050.0050.0000.0000.0000.000
82A85THR0-0.017-0.03114.6880.0090.0090.0000.0000.0000.000
83A86SER00.000-0.02011.646-0.053-0.0530.0000.0000.0000.000
84A87GLU-1-0.843-0.9008.850-0.488-0.4880.0000.0000.0000.000
85A88VAL00.001-0.00910.532-0.148-0.1480.0000.0000.0000.000
86A89ALA0-0.034-0.01611.750-0.032-0.0320.0000.0000.0000.000
87A90LYS10.8240.8928.1470.4500.4500.0000.0000.0000.000
88A91PHE00.007-0.01411.844-0.009-0.0090.0000.0000.0000.000
89A92SER0-0.0180.00912.8730.0160.0160.0000.0000.0000.000
90A93HIS0-0.0060.00113.8250.0320.0320.0000.0000.0000.000
91A94LEU0-0.0130.01315.8080.0140.0140.0000.0000.0000.000
92A95GLY00.0260.02218.9990.0120.0120.0000.0000.0000.000
93A96LYS10.8480.88222.3610.0590.0590.0000.0000.0000.000
94A97ASP-1-0.846-0.91123.815-0.087-0.0870.0000.0000.0000.000
95A98GLU-1-0.844-0.92621.759-0.129-0.1290.0000.0000.0000.000
96A99PHE00.0120.00218.235-0.014-0.0140.0000.0000.0000.000
97A100TRP00.025-0.00421.765-0.018-0.0180.0000.0000.0000.000
98A101SER0-0.0200.01224.795-0.006-0.0060.0000.0000.0000.000
99A102VAL00.029-0.00219.325-0.008-0.0080.0000.0000.0000.000
100A103MET0-0.028-0.01320.014-0.031-0.0310.0000.0000.0000.000
101A104ASP-1-0.825-0.89522.578-0.150-0.1500.0000.0000.0000.000
102A105HIS0-0.020-0.00724.5900.0030.0030.0000.0000.0000.000
103A106ARG10.8900.95316.1540.3830.3830.0000.0000.0000.000
104A107ASN0-0.049-0.02022.851-0.006-0.0060.0000.0000.0000.000
105A108LEU0-0.014-0.01518.824-0.012-0.0120.0000.0000.0000.000
106A109ILE0-0.040-0.01723.0530.0040.0040.0000.0000.0000.000
107A110TYR00.0340.01326.1400.0000.0000.0000.0000.0000.000
108A111PRO00.0050.00229.4870.0060.0060.0000.0000.0000.000
109A112PHE00.000-0.02531.9410.0060.0060.0000.0000.0000.000
110A113ASP-1-0.764-0.85834.874-0.080-0.0800.0000.0000.0000.000
111A114ALA00.0510.02437.401-0.002-0.0020.0000.0000.0000.000
112A115GLN0-0.123-0.07239.7540.0040.0040.0000.0000.0000.000
113A116GLY0-0.017-0.00238.8430.0010.0010.0000.0000.0000.000
114A117LEU0-0.036-0.02039.457-0.002-0.0020.0000.0000.0000.000
115A118ARG10.7910.89031.0920.1190.1190.0000.0000.0000.000
116A119ARG10.8490.92535.0880.0820.0820.0000.0000.0000.000
117A120GLN00.014-0.00333.586-0.005-0.0050.0000.0000.0000.000
118A121SER00.035-0.00428.0400.0010.0010.0000.0000.0000.000
119A122GLY0-0.0240.00129.587-0.002-0.0020.0000.0000.0000.000
120A123ASP-1-0.828-0.92631.529-0.074-0.0740.0000.0000.0000.000
121A124ILE0-0.0430.00327.1990.0020.0020.0000.0000.0000.000
122A125PRO00.0060.03430.2860.0050.0050.0000.0000.0000.000
123A126LYS10.8460.90827.9950.0760.0760.0000.0000.0000.000
124A127ASN0-0.033-0.02627.260-0.003-0.0030.0000.0000.0000.000
125A128ILE00.0450.02025.4730.0000.0000.0000.0000.0000.000
126A129HIS0-0.034-0.03629.1330.0010.0010.0000.0000.0000.000
127A130ASP-1-0.845-0.90332.050-0.069-0.0690.0000.0000.0000.000
128A131LEU0-0.074-0.02329.464-0.002-0.0020.0000.0000.0000.000
129A132GLU-1-0.804-0.91033.545-0.076-0.0760.0000.0000.0000.000
130A133ASP-1-0.831-0.92836.141-0.087-0.0870.0000.0000.0000.000
131A134ASP-1-0.744-0.85837.252-0.092-0.0920.0000.0000.0000.000
132A135PRO00.0460.02239.153-0.005-0.0050.0000.0000.0000.000
133A136PHE00.0740.03441.411-0.001-0.0010.0000.0000.0000.000
134A137ARG10.8050.90431.7720.1260.1260.0000.0000.0000.000
135A138SER0-0.050-0.02637.355-0.006-0.0060.0000.0000.0000.000
136A139LEU0-0.0060.01339.135-0.003-0.0030.0000.0000.0000.000
137A140ALA00.0400.01837.993-0.001-0.0010.0000.0000.0000.000
138A141GLY0-0.0010.01236.131-0.005-0.0050.0000.0000.0000.000
139A142ALA0-0.006-0.00936.916-0.002-0.0020.0000.0000.0000.000
140A143LEU00.0030.00739.9770.0000.0000.0000.0000.0000.000
141A144ARG10.7900.89032.3260.1410.1410.0000.0000.0000.000
142A145MET0-0.099-0.05137.471-0.002-0.0020.0000.0000.0000.000
143A146ALA00.0270.02738.4620.0020.0020.0000.0000.0000.000
144A147GLY00.0070.01640.2980.0030.0030.0000.0000.0000.000
145A148GLY00.003-0.02441.2880.0020.0020.0000.0000.0000.000
146A149TYR0-0.045-0.03335.2610.0000.0000.0000.0000.0000.000
147A150ALA00.0110.01234.957-0.002-0.0020.0000.0000.0000.000
148A151LYS10.9660.96728.4990.1830.1830.0000.0000.0000.000
149A152VAL0-0.010-0.00830.5470.0000.0000.0000.0000.0000.000
150A153ILE00.0170.00325.529-0.001-0.0010.0000.0000.0000.000
151A154ILE0-0.0070.01126.340-0.011-0.0110.0000.0000.0000.000
152A155PRO00.0460.02625.4010.0040.0040.0000.0000.0000.000
153A156PHE00.029-0.00425.8810.0140.0140.0000.0000.0000.000
154A157SER00.0300.03030.0790.0160.0160.0000.0000.0000.000
155A158GLU-1-0.793-0.89431.583-0.150-0.1500.0000.0000.0000.000
156A159PHE0-0.023-0.01931.2770.0080.0080.0000.0000.0000.000
157A160GLY00.0230.02834.9510.0070.0070.0000.0000.0000.000
158A161TRP0-0.011-0.02636.3690.0120.0120.0000.0000.0000.000
159A162ALA00.005-0.00137.9790.0060.0060.0000.0000.0000.000
160A163ASP-1-0.889-0.93239.132-0.082-0.0820.0000.0000.0000.000
161A164PHE0-0.001-0.01040.9660.0050.0050.0000.0000.0000.000
162A165LEU00.0220.00842.0820.0050.0050.0000.0000.0000.000
163A166ARG10.8190.89139.3240.0910.0910.0000.0000.0000.000
164A167ARG10.7990.89442.7960.0820.0820.0000.0000.0000.000
165A168ARG10.7360.84945.7100.0760.0760.0000.0000.0000.000
166A169ILE0-0.029-0.00246.9750.0020.0020.0000.0000.0000.000
167A170ASP-1-0.848-0.92748.897-0.054-0.0540.0000.0000.0000.000
168A171ARG10.9370.95047.5350.0560.0560.0000.0000.0000.000
169A172ASP-1-0.871-0.92149.481-0.051-0.0510.0000.0000.0000.000
170A173LEU00.0190.01651.3750.0000.0000.0000.0000.0000.000
171A174LEU0-0.050-0.03144.674-0.001-0.0010.0000.0000.0000.000
172A175SER0-0.068-0.03748.595-0.001-0.0010.0000.0000.0000.000
173A176ASP-1-0.937-0.95250.116-0.046-0.0460.0000.0000.0000.000
174A177SER0-0.070-0.08051.6260.0000.0000.0000.0000.0000.000
175A178PHE00.0210.01341.964-0.003-0.0030.0000.0000.0000.000
176A179ASP-1-0.794-0.89046.792-0.071-0.0710.0000.0000.0000.000
177A180ASP-1-0.823-0.86748.810-0.055-0.0550.0000.0000.0000.000
178A181ALA00.0100.00447.952-0.001-0.0010.0000.0000.0000.000
179A182LEU0-0.033-0.01943.685-0.003-0.0030.0000.0000.0000.000
180A183ALA00.0060.00846.812-0.002-0.0020.0000.0000.0000.000
181A184GLU-1-0.775-0.87249.795-0.060-0.0600.0000.0000.0000.000
182A185ALA00.0070.00144.645-0.001-0.0010.0000.0000.0000.000
183A186MET00.0000.00244.589-0.005-0.0050.0000.0000.0000.000
184A187LYS10.8140.88546.8100.0580.0580.0000.0000.0000.000
185A188LEU0-0.017-0.01347.3160.0000.0000.0000.0000.0000.000
186A189ALA0-0.0190.00243.338-0.001-0.0010.0000.0000.0000.000
187A190LYS10.7800.88443.0990.0890.0890.0000.0000.0000.000
188A191SER0-0.041-0.01947.3240.0020.0020.0000.0000.0000.000
189A192ARG10.9550.96047.4110.0620.0620.0000.0000.0000.000
190A193GLU-1-0.868-0.91248.106-0.070-0.0700.0000.0000.0000.000
191A194ALA00.0270.02043.512-0.002-0.0020.0000.0000.0000.000
192A195ARG10.8800.92642.7200.0710.0710.0000.0000.0000.000
193A196HIS0-0.0070.00641.090-0.002-0.0020.0000.0000.0000.000
194A197LEU0-0.0140.01238.752-0.005-0.0050.0000.0000.0000.000
195A198PRO00.002-0.00133.805-0.001-0.0010.0000.0000.0000.000
196A199GLY00.0390.01335.8120.0000.0000.0000.0000.0000.000
197A200TRP0-0.0220.00336.6500.0030.0030.0000.0000.0000.000
198A201CYS0-0.017-0.00640.480-0.001-0.0010.0000.0000.0000.000
199A202GLY00.0770.03542.5490.0030.0030.0000.0000.0000.000
200A203VAL0-0.0120.00446.334-0.001-0.0010.0000.0000.0000.000
201A204GLU-1-0.945-0.97244.691-0.083-0.0830.0000.0000.0000.000